/Build.PL

use Module::Build;
my $build = Module::Build->new(

    module_name        => 'CXGN',
    dist_name          => 'CXGN-corelibs',
    license            => 'perl',
    create_makefile_pl => 'passthrough',

    # current version of our core libraries distribution
    dist_version => '0.1',

    recursive_test_files => 1,

    requires => {
        'perl'                                    => '5.6.1',
#         'Apache2::CmdParms' => 0,
#         'Apache2::Connection' => 0,
#         'Apache2::Const' => 0,
#         'Apache2::Cookie' => 0,
#         'Apache2::Filter' => 0,
#         'Apache2::Module' => 0,
#         'Apache2::Request' => 0,
#         'Apache2::RequestRec' => 0,
#         'Apache2::RequestUtil' => 0,
#         'Apache2::SubRequest' => 0,
#         'Apache2::Upload' => 0,
#         'APR::Status' => 0,
#         'APR::Table' => 0,

	# bioperl modules
#	'Bio::Root::Version' => '1.006000',
# 	'Bio::AlignIO' => 0,
# 	'Bio::Annotation::SimpleValue' => 0,
# 	'Bio::Annotation::Target' => 0,
# 	'Bio::Assembly::IO' => 0,
# 	'Bio::Chado::Schema' => 0,
# 	'Bio::DB::GenBank' => 0,
# 	'Bio::DB::GFF' => 0,
# 	'Bio::Factory::SeqAnalysisParserFactory' => 0,
# 	'Bio::FeatureIO' => 0,
# 	'Bio::Index::Fasta' => 0,
# 	'Bio::Ontology::OntologyI' => 0,
# 	'Bio::Ontology::RelationshipI' => 0,
# 	'Bio::PrimarySeq' => 0,
# 	'Bio::Restriction::Analysis' => 0,
# 	'Bio::Root::IO' => 0,
# 	'Bio::Root::Root' => 0,
# 	'Bio::SearchIO' => 0,
# 	'Bio::SearchIO::FastHitEventBuilder' => 0,
# 	'Bio::SearchIO::Writer::HTMLResultWriter' => 0,
# 	'Bio::Seq' => 0,
# 	'Bio::Seq::LargePrimarySeq' => 0,
# 	'Bio::Seq::Quality' => 0,
# 	'Bio::Seq::SeqFactory' => 0,
# 	'Bio::Seq::SeqFastaSpeedFactory' => 0,
# 	'Bio::SeqFeature::Annotated' => 0,
# 	'Bio::SeqFeature::Computation' => 0,
# 	'Bio::SeqFeature::Generic' => 0,
# 	'Bio::SeqIO' => 0,
# 	'Bio::SeqUtils' => 0,
# 	'Bio::Tools::Gel' => 0,
#	'Bio::Tools::RepeatMasker' => 0,
# 	'Bio::Tools::Run::StandAloneBlast' => 0,
# 	'Bio::Tools::tRNAscanSE' => 0,

	# GMOD modules
	'Bio::GMOD::GenericGenePage' => 0,

	# normal CPAN modules

        'Array::Compare' => 0,
        'Bio::Chado::Schema' => '0.04000',
        'Cache::File' => 0,
        'Carp::Clan' => 0,

        # include a couple of deps necessary for shipwright to build
        # Catalyst's deps correctly
        'ExtUtils::Depends'       => 0,
        'B::Hooks::OP::Check'     => 0,

        'Catalyst::Utils' => 0,
        'CGI::Session' => 0,
        'CGI::Session::ID::md5' => 0,
        'Class::Accessor' => 0,
        'Class::Data::Inheritable' => 0,
        'Class::DBI' => 0,
        'Config::Any'     => 0,
        'Config::General' => 0,
        'Data::BitMask' => 0,
        #'DBD::mysql' => 0,
	'DBD::Pg'    => 0,
        'DBI' => 0,
        'DBIx::Class' => 0,
        'DBIx::Class::Schema' => 0,
        'Devel::InnerPackage' => 0,
        'Digest::Crc32' => 0,
        'Digest::MD5' => 0,
        'enum' => 0,
        'Error' => 0,
        'File::Find::Rule' => 0,
        'File::Flock' => 0,
        'File::NFSLock' => 0,
	'File::Path' => '2.08',
        'File::Temp' => 0,
        'GD' => 0,
        'Graph' => 0,
        'Hash::Merge' => 0,
        'Hash::Util' => 0,
        'HTML::Entities' => 0,
        'HTML::TreeBuilder' => 0,
        'Ima::DBI' => 0,
        'JSON' => 0,
        'List::Compare' => 0,
        'List::MoreUtils' => 0,
        'List::Util' => 0,
        'local::lib' => 0,
        'Log::Log4perl' => 0,
        'LWP::Simple' => 0,
        'LWP::UserAgent' => 0,
        'Mail::Sendmail' => 0,
        'Memoize' => 0,
#         'ModPerl::RegistryCooker' => 0,
#         'ModPerl::Util' => 0,
        'Module::Build' => 0,
        'Module::Pluggable::Object' => 0,
        'Moose' => 0,
        'Moose::Role' => 0,
        'Moose::Util::TypeConstraints' => 0,
        'namespace::autoclean' => 0,
        'Params::Validate' => 0,
        'Path::Class' => 0,
        'SOAP::Lite' => 0,
        'SOAP::Transport::HTTP' => 0,
        'Storable' => 0,
        'String::Random' => 0,
        'Template' => 0,
        'Term::ReadKey' => 0,
        'Test::Exception' => 0,
        'Test::More' => 0,
        'Test::XML::Simple' => 0,
        'Text::Glob' => 0,
        'Text::Shellwords' => 0,
        'Tie::Function' => 0,
        'Tie::UrlEncoder' => 0,
        'Time::HiRes' => 0,
        'URI' => 0,
        'URI::Escape' => 0,
        'URI::ToDisk' => 0,
        'XML::DOM' => 0,
        'XML::Generator' => 0,
        'XML::LibXML' => 0,
        'XML::Simple' => 0,
        'XML::Twig' => 0,
        'XML::Writer' => 0,
    },
    build_requires => {

	#'Bio::Root::Version' => '1.006000',
	#'Bio::FeatureIO' => 0,
	#'Bio::Index::Fasta' => 0,
	#'Bio::SeqIO' => 0,
	#'Bio::SeqUtils' => 0,
	#'Bio::Tools::RepeatMasker' => 0,

        'Class::MethodMaker'  => 0,
        'DBIx::Class::Schema' => 0,
        'File::Temp' => 0,
        'IO::String' => 0,
        'IO::Pipe' => 0,
        'IPC::Cmd'   => 0,
        'List::MoreUtils' => 0,
        'List::Util' => 0,
        'Moose' => 0,
        'Path::Class' => 0,
        'Storable' => 0,
        'Test::Exception' => 0,
        'Test::More' => 0,
        'Test::Simple' => 0,
        'Test::Warn' => 0,
        'Test::XML::Simple' => 0,
        'Text::Glob' => 0,
        'Tie::Function' => 0,
        'HTTP::Server::Simple' => 0,
    },
);
$build->create_build_script;