% Parameters: 

% InputFile: i 'Input 3D Data Object', required: 'input 3d data object'

% InputFile: cmap 'Vis Colormap ', required: 'input vis colormap'

% Double: shrink 'Shrink Factor', default: 1: 'ratio of cuberille size to grid block size.'

% Parameters: 

% InputFile: i1 'Label Img', required: 'Image consisting of labelled pixels (0 or negative mean no label)'

% InputFile: i2 'Vectors', required: 'Vector image to be introduced (Y-coordinate corresponds to the label)'

% OutputFile: o 'Output', required: 'Resulting output data object'

% Parameters: 

% InputFile: i 'Input ', required: 'First Input data object'

% InputFile: vecin 'Midpoint', optional: 'The first vector in this file defines the center !'

% OutputFile: o 'Output', required: 'Resulting output data object'

% Parameters: 

% InputFile: i 'Input Image', required: 'input image'

% InputFile: str 'Struct Element', required: 'Structuring Element'

% OutputFile: o 'Output Image ', required: 'resulting output image'

% Parameters: 

% InputFile: i1 'Input 1', required: 'Source Input File'

% InputFile: i2 'Input 2', required: 'Destination Input File'

% OutputFile: o 'Output ', required: 'output file'

% Parameters: 

% InputFile: i1 'Input 1', required: 'First input data object'

% OutputFile: o 'Output', required: 'Resulting output data object'

% InputFile: i2 'Input 2', optional: 'Second input data object'

% Parameters: 

% InputFile: i1 'Images (along elements)', required: 'Series of images (also 3D) stacked along elment direction'

% InputFile: i2 'Colors', required: 'Color vectors (along X) stacked along element direcition'

% Double: t 'DAPI threshold', default: 10: 'Element 0 is assumed to contain the DAPI channel. Pixels below threshold are ignored.'

% Parameters: 

% InputFile: i 'Input 2D Data Object', required: 'input 2d data for quadmesh'

% OutputFile: o 'Output Geometry Quadmesh', required: 'ouput geometry quadmesh'

% InputFile: cmap 'Vis Colormap', optional: 'input vis colormap'

% Parameters: 

% InputFile: i1 'Input Matrix 1', required: 'Input matrix 1'

% InputFile: i2 'Input Matrix 2', required: 'Input Matrix 2'

% OutputFile: o 'Output', required: 'Output file'

% Parameters: 

% InputFile: i1 'Input 1', required: 'First input data object'

% OutputFile: o 'Output', required: 'Resulting output data object'

% InputFile: i2 'Input 2', optional: 'Second input data object'

% Parameters: 

% InputFile: i1 'Input 1', required: 'First input data object'

% OutputFile: o 'Output', required: 'Resulting output data object'

% InputFile: i2 'Input 2', optional: 'Second input data object'

% Parameters: 

% InputFile: i1 'Input 1', required: 'First input data object'

% OutputFile: o 'Output', required: 'Resulting output data object'

% InputFile: i2 'Input 2', optional: 'Second input data object'

% Parameters: 

% InputFile: i 'Input ', required: 'Input data object'

% InputFile: igate 'Gating Input', optional: 'Gating input data object'

% Integer: bins 'Number of bins ', default: 256: 'number of histogram bins'

% Parameters: 

% InputFile: i1 'Input 1', required: 'First input data object'

% OutputFile: o 'Output', required: 'Resulting output data object'

% InputFile: i2 'Input 2', optional: 'Second input data object'

% Parameters: 

% InputFile: i 'Input Flow Data', required: 'Data object containing flow vectors. Must have 3 computational dimensions and 3 coordinate dimensions.'

% InputFile: rake 'Rake Data ', required: 'List of x,y,z points used for seeding the streamlines computation.'

% String: name 'Name ', default: 'streamlines': 'Internal name of geometry object.'

% Parameters: 

% InputFile: i 'Input ', required: 'First Input data object'

% InputFile: m 'Matrix Input', required: 'Matrix has to be in XY format (X being multiplied with elements)'

% Integer: valid 'Valid orders', default: 2: 'numkber of components (after matrix application) that are valid. If <=0 the full size of the matrix will be used'

% Parameters: 

% InputFile: i1 'Input 1', required: 'first input data object'

% OutputFile: o 'Output', required: 'resulting output data object'

% InputFile: i2 'Input 2', optional: 'second input data object'

% Parameters: 

% InputFile: i1 'First Input Data Object ', required: 'First Input data object'

% InputFile: i2 'Second Input Data Object', required: 'Second Input data object'

% OutputFile: o 'Output Data Object', required: 'Resulting output data object'

% Parameters: 

% InputFile: i 'Input ', required: 'input images'

% InputFile: str 'Struct Element', required: 'Structuring Element'

% OutputFile: o 'Output', required: 'resulting output image'

% Parameters: 

% InputFile: i1 'Input 1', required: 'First input data object'

% OutputFile: o 'Output', required: 'Resulting output data object'

% InputFile: i2 'Input 2', optional: 'Second input data object'