/examples/test_apis.json
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- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553439.1",
- "tree": "((JCVI_PEP_metagenomic.orf.1134269553439.1:0.28882,(((CUH1gC08mGRS+bsqXyyLFmtJmBg__Haloarcula_hispanica_ATCC_33960:0.03239,fc6eGID3t1uM1z6pXua6EIeLAfg__Haloarcula_marismortui_ATCC_43049:0.02675)100:0.09151,2eAlGs9xzxDUorKX36cbFMCKWSw__Haloferax_volcanii_DS2:0.13056)98:0.02838,(H9tyQ+h+4RQaMvaCAYRGEl+pUDI__Haloarcula_marismortui_ATCC_43049:0.05048,QAyFNkE1vGEX25mw+vIevnbgFR0__Haloarcula_hispanica_ATCC_33960:0.04952)100:0.10918)100:0.16494)76:0.012934999999999974,(((6ioQRtI9kXRcqAe+g1y58lq1dv0__Hoeflea_phototrophica_DFL-43:0.21346,(EaBzS+f1NWsxyEAaNquTZ51axbs__Jannaschia_sp._CCS1:0.19024,HE7ljTnda1/msYBtnjseG4OxFIA__Rhodobacter_sp._SW2:0.19973)98:0.03128)70:0.0178,jcFdOjKTHy41lDlxTUcjnQcYSZs__Aurantimonas_manganoxydans_SI85-9A1:0.21096)100:0.07382,((((((EU9MSEpa6EGbQn7q9GYFhhL1qc8__Clostridium_botulinum_type_C_-_Eklund:0.02147,L4q7ztiyzpUmdSE38yoNIemMMyE__Clostridium_novyi_NT:0.02692)100:0.16813,JpStRzuXJeLW/uFQhdhc82zl/J8__Clostridium_cellulovorans_743B_ATCC_35296:0.19051)99:0.03601,(sArgeTdrJYoKD+9Pu4JN0JmL6ZE__Clostridium_papyrosolvens_DSM_2782:0.05915,Yk5JVDEWKaGx1LlBm4m6rnE+NVY__Clostridium_cellulolyticum_H10:0.05573)100:0.18131)54:0.00949,(((bmfGb78dB0z1BzG92IV51Le/VXQ__Eubacterium_siraeum_DSM_15702:0.01071,SXW/Tvnslao1cX/E35D/+4uh18s__Eubacterium_siraeum_70/3:0.01035)90:0.00838,7eNUZrAgtGFdD3s9m1i6fx2Ijbw__Eubacterium_siraeum_V10Sc8a:0.01925)100:0.23848,B5AlQiojiE+Jdwld8lghgGbPlOs__Anaerotruncus_colihominis_DSM_17241:0.26199)66:0.01091)97:0.03339,(Y88qGqN2KZOFdu0MBV7VZzw04o4__Spirochaeta_smaragdinae_DSM_11293:0.22868,vIXMswBFDZVI+PBdgy3N65CI/Ic__Spirochaeta_sp._Buddy:0.2727)93:0.03362)24:0.00216,((((((((PRKXQMBMpl3THwIu42rCf7ScRGQ__Desulfovibrio_vulgaris_str._Hildenborough:0.00149,gIqE7v3/6+C8iY2yGhxqI1gKZsk__Desulfovibrio_vulgaris_DP4:0.00113)100:0.12424,NyTdpUUFCeXWbEb8ar7BcYpeuKc__Desulfovibrio_vulgaris_str._'Miyazaki_F':0.13572)78:0.01341,sY3WVq4RCh1r5ebaaWOjRUqvEhE__Desulfovibrio_alaskensis_G20:0.13989)62:0.01205,FBcKR9vHIqCnUW92s7n8XDuhvok__Bilophila_sp._4_1_30:0.17559)58:0.01889,KdE3aMpPeStSP4lT4k6XXBILOUY__Desulfotalea_psychrophila_LSv54:0.16376)16:0.00743,((tC4DgG7QkigL7vbZ8ap3YBm2PT8__Desulfomicrobium_baculatum_DSM_4028:0.15101,MMGbl1dKC0Rd/FMlNjJVlePPEUs__Desulfovibrio_aespoeensis_Aspo-2:0.17569)34:0.01084,ei1R+foPTAg8L5AqVXu0bVkTgjk__Desulfohalobium_retbaense_DSM_5692:0.19028)20:0.00778)9:0.00268,kh4n9Z676j7/xCm2fYx4ioV/PvM__Desulfovibrio_salexigens_DSM_2638:0.19276)100:0.04615,(((((((iJQtIykihmEAPd1lKOSIvSdLMJE__Desulfotomaculum_ruminis_DSM_2154:0.10248,dfIqiH50AjETs72UW8GYHpIXjJA__Desulfotomaculum_reducens_MI-1:0.10676)100:0.03716,y3dVBLUVplQySRTxuvYBCheTb1Q__Heliobacterium_modesticaldum_Ice1:0.14245)62:0.00945,JW0WEDpnD0+Xn/smk2THM/jLXKA__Thermincola_potens_JR:0.15589)73:0.01311,bS/8n7CfS+9vprbClOBpKWoycAQ__Moorella_thermoacetica_ATCC_39073:0.16775)100:0.03226,(bfjbkjS/sfMAU3hXfcybLPfWG2k__Paenibacillus_mucilaginosus_KNP414:0.11515,4gS8md7qAB5tq4f7JUwQ2KKDx6Q__Paenibacillus_sp._JDR-2:0.12141)100:0.1318)57:0.00729,((xt/5guyDvM9gMKjc8I6m9dr524o__Calditerrivibrio_nitroreducens_DSM_19672:0.13748,WxkOLU4DB8qTRtNVZcGD1sqtXiI__Deferribacter_desulfuricans_SSM1:0.13602)98:0.03166,IpS1RyKd7HWJTRvjAhgy5mYDPaY__Denitrovibrio_acetiphilus_DSM_12809:0.19923)100:0.03972)43:0.00831,(((((k5JvEukAiIDG/bV9P+6vMDHfXSI__Mesotoga_prima_MesG1.Ag.4.2:0.17233,yhxCi6NzR3eUEMO5Mca8ccEWv+g__Kosmotoga_olearia_TBF_19.5.1:0.13515)98:0.03023,NuGmdzKTPgaPZjiVFsr/7pW5Vwk__Mesotoga_prima_MesG1.Ag.4.2:0.23701)70:0.01985,(6ZCLcxPWokanynWHCZaQBXzPjDI__Archaeoglobus_veneficus_SNP6:0.09911,ctQWzQ2I9XGNXQvCtrxdjh8RvFA__Archaeoglobus_fulgidus_DSM_4304:0.10788)100:0.10056)55:0.01473,JUmyi//duFKbbCqlIDKzOXmuSY8__Haliangium_ochraceum_DSM_14365:0.26105)39:0.00922,((UdvV/B17qRRIO+PVgrOYwf4bTXg__Anaerobaculum_hydrogeniformans_ATCC_BAA-1850:0.16241,2Ls/1YH+h3vnFGRqnescRb1QRlI__Aminobacterium_colombiense_DSM_12261:0.14485)99:0.04281,(R3uGghNs5c3Y0ovjVFDpyYWHTOY__Dethiosulfovibrio_peptidovorans_DSM_11002:0.18874,dfTYyoAAbKhWC45d4YAAPV9unk0__Jonquetella_anthropi_E3_33_E1:0.2107)46:0.0033)100:0.05403)3:0.00202):0.00208)3:0.00696)33:0.0083)38:0.010965000000000027);",
- "strict_consensus": {
- "kingdom": "Archaea",
- "kingdom_outgroup": 1,
- "phylum": "Euryarchaeota",
- "phylum_outgroup": 1,
- "class": "Halobacteria",
- "class_outgroup": 1,
- "order": "Halobacteriales",
- "order_outgroup": 1,
- "family": "Halobacteriaceae",
- "family_outgroup": 1,
- "genus": "Mixed",
- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "relaxed_consensus": {
- "kingdom": "Archaea",
- "kingdom_outgroup": 1,
- "phylum": "Euryarchaeota",
- "phylum_outgroup": 1,
- "class": "Halobacteria",
- "class_outgroup": 1,
- "order": "Halobacteriales",
- "order_outgroup": 1,
- "family": "Halobacteriaceae",
- "family_outgroup": 1,
- "genus": "Haloarcula",
- "genus_outgroup": 1,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "strict_taxon_id": 2236,
- "strict_taxon": "Halobacteriaceae",
- "relaxed_taxon_id": 2237,
- "relaxed_taxon": "Haloarcula",
- "bootstrap": 76
- }
- {
- "name": "foobar",
- "tree": "NO_TREE",
- "strict_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- },
- "relaxed_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- }
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553443.1",
- "tree": "NO_TREE",
- "strict_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- },
- "relaxed_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- }
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553503.1",
- "tree": "NO_TREE",
- "strict_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- },
- "relaxed_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- }
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553525.1",
- "tree": "((JCVI_PEP_metagenomic.orf.1134269553525.1:0.28245,(AeJTIv/++Di/jskyI9rCelRGskY__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.26674,L32WHWBUuzwH975IX6EAYl1hP48__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.27532)96:0.06853)74:0.02155499999999999,(((GqPn4m8LUeR97mPo2qCZNAkN3LE__Burkholderia_sp._Ch1-1,GqPn4m8LUeR97mPo2qCZNAkN3LE__Burkholderia_sp._Ch1-1):0.2355,scQyBL12xTPWM2XZ80FHueZcBUQ__Desulfovibrio_sp._FW1012B:0.30499)50:0.02028,PgflL12p8FsipcqlgjRC3rRXBvo__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.2784):0.002975000000000009);",
- "strict_consensus": {
- "kingdom": "Viruses",
- "kingdom_outgroup": 1,
- "phylum": "Marine_Viruses",
- "phylum_outgroup": 1,
- "class": "Planktonic_Viruses",
- "class_outgroup": 1,
- "order": "Chesapeak_Viruses",
- "order_outgroup": 1,
- "family": "Chesapeak_Viruses_X",
- "family_outgroup": 1,
- "genus": "Chesapeak_Viruses_XX",
- "genus_outgroup": 1,
- "species": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
- "species_outgroup": 1
- },
- "relaxed_consensus": {
- "kingdom": "Viruses",
- "kingdom_outgroup": 1,
- "phylum": "Marine_Viruses",
- "phylum_outgroup": 1,
- "class": "Planktonic_Viruses",
- "class_outgroup": 1,
- "order": "Chesapeak_Viruses",
- "order_outgroup": 1,
- "family": "Chesapeak_Viruses_X",
- "family_outgroup": 1,
- "genus": "Chesapeak_Viruses_XX",
- "genus_outgroup": 1,
- "species": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
- "species_outgroup": 1
- },
- "strict_taxon_id": -283556,
- "strict_taxon": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
- "relaxed_taxon_id": -283556,
- "relaxed_taxon": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
- "bootstrap": 74
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553681.1",
- "tree": "((((90MsywKoDKwbueOz4blD33qOwN8__Symbiobacterium_thermophilum_IAM_14863:0.1681,kpi5AE2w9XurqajWt949DanSk7Y__Spirochaeta_smaragdinae_DSM_11293:0.20805)45:0.0119,(lZ6tF2rtrEMxDL2rQf3yhKvBp9M__Roseiflexus_sp._RS-1:0.05386,Y9/kCQdiaYGymbhNubj2srbiKVE__Roseiflexus_castenholzii_DSM_13941:0.05524)100:0.15644)10:0.01002,7ZkaHKYc1+fFtVedU1W+iyTmqmk__Meiothermus_silvanus_DSM_9946:0.31416)2:0.0036249999999999893,((((((((WvOoHAvPOMHMh7De2ewi3gWnByI__Thermococcus_sp._AM4:0.02836,Fs/GHiQwnIlJEwKqBJQ+h+XCTiU__Thermococcus_gammatolerans_EJ3:0.0302)56:0.01173,CJgLfI+FdI04LibRESORqGGNwnA__Thermococcus_kodakarensis_KOD1:0.04426)67:0.00918,SHEu4MKdrJLR6fRlKyHojGk1O8o__Thermococcus_sp._4557:0.05054)82:0.01838,TKdwQY8f6XhOiGdr+XyoLS6gGVw__Thermococcus_onnurineus_NA1:0.0713)91:0.0141,(fsjjA4XnLXBHO4tkp+v61w3aWxQ__Thermococcus_sibiricus_MM_739:0.06332,AfXXlL4Vw5jDmHl+b4WA6nCNDsE__Thermococcus_barophilus_MP:0.04219)99:0.03988)100:0.05843,hIq7cz7sakNGaiowEpDIvUz1CLA__Aciduliprofundum_boonei_T469:0.16561)98:0.03928,i9pmDz09Dz7Mhyvj6XFWGtj6yVA__Methanothermobacter_marburgensis_str._Marburg:0.23241)38:0.01396,(((YTY0OVtenOgXwb6ytgVDMzdVCVY__Paenibacillus_sp._JDR-2:0.19158,(((((4uMI3MdpwsS8A7dccqQGapny5+U__Providencia_rustigianii_DSM_4541:0.0272,ggWmHHeNlRhMWUNa+Qbcx9IsXpc__Providencia_alcalifaciens_DSM_30120:0.02235)94:0.02027,9InBCCz3S7n0WNh+hKx5UtHpiHQ__Providencia_rettgeri_DSM_1131:0.04279)98:0.02376,UgcJr9AlU0lPtQ247Pvbb6I1+sQ__Providencia_stuartii_ATCC_25827:0.07647)100:0.06938,(PPDhmeZ1zczCZVFll0l0maYhaK8__Proteus_penneri_ATCC_35198:0.03811,uYHYzZQEULCVcsDnpzOsR0TBK44__Proteus_mirabilis_HI4320:0.03396)100:0.11277)100:0.05371,(bxzVXsOObBTvgkGpZpJfQzYh2cI__Actinobacillus_succinogenes_130Z:0.10326,vphOKBy8K84swDUIzDW3B5IWOLY__Mannheimia_succiniciproducens_MBEL55E:0.08424)100:0.11338)87:0.024)47:0.01476,(((E3lXP9BFGiGz1iEulq3Tx4BsZUo__Micrococcus_luteus_NCTC_2665:0.01942,cVLplGP45QvuobN87a7PZfwVRX4__Micrococcus_luteus_SK58:0.01988)100:0.19136,jQ7YEhlAgGn+TkjPY7SVCRoAPGM__Arthrobacter_arilaitensis_Re117:0.19665)64:0.02434,5mOPyOutuK5h22nkySFiwyIU2i8__Vibrio_vulnificus_YJ016:0.2314)24:0.01142)10:0.01153,((((IxUMradZhr244EeSkbVUZEqThuo__Clostridium_ljungdahlii_DSM_13528:0.08936,iUqtFlB0IlCOeY4ON23UHlI7Sgo__Clostridium_carboxidivorans_P7_P7:0.07886)100:0.06188,(WMuAV3HuY7AJBeq+DUpATDO73qI__Pediococcus_acidilactici_7_4:0.00133,ONGRTT8dtnmmDI8yEX8B2Hq0qIA__Pediococcus_acidilactici_DSM_20284:0.00332)100:0.18579)56:0.02084,((8IMkUnO5C0C+qoQQr1Kf0K3CHos__Clostridium_cellulolyticum_H10:0.16838,JiUAYjyqy2hd+e+DocO1Buj/GUw__Clostridium_leptum_DSM_753:0.16026)47:0.03026,((((MCWYmhL035KvIaWAJVGLtX2BQvA__Olsenella_uli_DSM_7084:0.14464,Mz1XKfMS4yK7mogTy8oyj9FdxQE__Atopobium_vaginae_PB189-T1-4:0.13837)76:0.02045,(HyqEKzgJ4zfUbCEJNCN88jpHbvQ__Atopobium_rimae_ATCC_49626:0.07153,VHtAnJdK4n4V6P3cwE4dxg7mWvI__Atopobium_parvulum_DSM_20469:0.0787)100:0.07822)83:0.03247,shlGk2/Z6XY3e9x2t4pFJKPpU2Y__Atopobium_vaginae_DSM_15829:0.20534)99:0.04639,(TtKoGlhnaohVSu8eHn0yPDKTQmw__Anaerococcus_lactolyticus_ATCC_51172:0.102,WieBGVSq0qa2f8yL5tJyiM4EUE8__Anaerococcus_prevotii_DSM_20548:0.10654)100:0.11789)20:0.01461)3:0.00287)2:0.00462,((((JCVI_PEP_metagenomic.orf.1134269553681.1:0.12056,BD9UnCE8Hq6cS3hB4ZBlzHTJykc__Peptoniphilus_sp._oral_taxon_386_str._F0131:0.19476)22:0.00968,GLwhS4qsKWTwG1DcP9qho1zaHzo__Clostridium_papyrosolvens_DSM_2782:0.18491)4:0.00548,51ewEFWGb4lXmJqb6UTTW7vVuuo__Clostridium_sp._7_2_43FAA:0.18001)1:0.00459,((72Knx+1qvHbdmr4RB38GTqEht2w__Clostridium_tetani_E88:0.15834,ka9Yf4Yxfp8EikNnAef05bT0WHw__Anaerostipes_caccae_DSM_14662:0.27685)24:0.01336,((op3sWpNTIPlyCsG6ze0lEyVColM__Parvimonas_micra_ATCC_33270:0.17176,flKESLtesaaGe6tew/FkF8cbj8w__Peptoniphilus_harei_ACS-146-V-Sch2b:0.17871)50:0.01865,(MeSBoRqK2cpYjGQlN5C7trNCfV0__Peptoniphilus_sp._oral_taxon_836_str._F0141:0.00338,q9XKV6a9V4RkSqyBK1HJMqQlRIQ__Peptoniphilus_lacrimalis_315-B:0.00571)100:0.1805)39:0.0203)1:0.00785)0:0.00239)2:0.00176):0.00851)3:0.00018500000000001068);",
- "strict_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Firmicutes",
- "phylum_outgroup": 0,
- "class": "Clostridia",
- "class_outgroup": 0,
- "order": "Clostridiales",
- "order_outgroup": 0,
- "family": "Clostridiales_I",
- "family_outgroup": 1,
- "genus": "Peptoniphilus",
- "genus_outgroup": 1,
- "species": "Peptoniphilus sp. oral taxon 386 str. F0131",
- "species_outgroup": 1
- },
- "relaxed_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Firmicutes",
- "phylum_outgroup": 0,
- "class": "Clostridia",
- "class_outgroup": 0,
- "order": "Clostridiales",
- "order_outgroup": 0,
- "family": "Clostridiales_I",
- "family_outgroup": 1,
- "genus": "Peptoniphilus",
- "genus_outgroup": 1,
- "species": "Peptoniphilus sp. oral taxon 386 str. F0131",
- "species_outgroup": 1
- },
- "strict_taxon_id": 575609,
- "strict_taxon": "Peptoniphilus sp. oral taxon 386 str. F0131",
- "relaxed_taxon_id": 575609,
- "relaxed_taxon": "Peptoniphilus sp. oral taxon 386 str. F0131",
- "bootstrap": 22
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553707.1",
- "tree": "(((((((Ktz0WQ4lqMiGvq7vsur0kE5x7zw__Clostridium_butyricum_5521:0.05021,(oplcMBXtdNZmJhf0HjenG4aTgrI__Clostridium_botulinum_E3_str._Alaska_E43:0.00558,(Zvx+U6D/4Ojoj7XzuTzZ/i0ku9c__Clostridium_botulinum_E1_str._'BoNT_E_Beluga':0.00166,/IMR/3rh3Pws+bQAfUEJUmcI5yM__Clostridium_botulinum_B_str._Eklund_17B:0.00108)96:0.00401)100:0.04568)52:0.0031,JV6pC7oT8zNmTZWU6Qjmk0syL+U__Clostridium_beijerinckii_NCIMB_8052:0.04416)92:0.02091,((iSak/cnwG4tFW+um6s9Ge+Jbr0s__Clostridium_perfringens_str._13:0.00164,GWGEbt9IcrjUe4qZxvg8JKN/hq0__Clostridium_perfringens_SM101:0.0011)100:0.05805,Spp8AwpuNTeRFYKfZrmbtO3DJ54__Clostridium_sp._7_2_43FAA:0.06249)78:0.01008)100:0.02923,tlAggjh4s326ZZsa8UJjFw4l7Dg__Clostridium_tetani_E88:0.11932)68:0.01344,((evdTHBXKfbyYleG4p9i+acT9rMc__Clostridium_acetobutylicum_ATCC_824:0.10902,((BSrQbVe0qJKPBkZsHy/NN9EskOg__Clostridium_novyi_NT:0.01448,+65j2GYwDdPFGtzBQ5rlZOyZL4Q__Clostridium_botulinum_D_str._1873:0.01566)56:0.00655,p7K5evGI8+pJtQzoKyuzQK0/9nc__Clostridium_botulinum_type_C_-_Eklund:0.02632)100:0.0992)37:0.00783,((FCMupPJLNNNgPyQuxkUloU98p+8__Clostridium_kluyveri_DSM_555:0.07787,AZRtl4E3u5nHYXbT+aEvn2eZhz4__Clostridium_ljungdahlii_DSM_13528:0.0646)100:0.02811,((MCewCfng96g1hKN3e0M3ILOo5c0__Clostridium_botulinum_F_str._230613:0.00159,(EpekyM6L3g3+//5i7pJcavSIhU8__Clostridium_botulinum_NCTC_2916:0.00091,qEOYsakbBPXvuv3mNprkZcXsHeg__Clostridium_botulinum_A_str._ATCC_3502:0.00183)64:0.00115)78:0.00445,(/w1uUyXqM/C0mwl9gbXm/MXtpxk__Clostridium_botulinum_A3_str._Loch_Maree:0.00416,fWwcc865+747H8JzEzpytS/Tjwo__Clostridium_sporogenes_ATCC_15579:0.0068)45:0.00103)100:0.0873)60:0.00959)52:0.00671)100:0.0428,((Ro+9QETkbM5O1XSqtYxlk/q2X3c__Caldicellulosiruptor_hydrothermalis_108:0.00115,7z3cPbGORv/embjcZfE5muLnQhQ__Caldicellulosiruptor_kristjanssonii_177R1B:0.00161)100:0.13328,((DMfUq7xCMtTM+asEjS0ZrhLI4l8__Clostridium_papyrosolvens_DSM_2782:0.02666,Qj7z0Xfa0IlRiIQJ9MTOdIulx3w__Clostridium_cellulolyticum_H10:0.02279)100:0.08429,g4Y1Ibc3eJmkia9HhS5uFAhMMGQ__Clostridium_thermocellum_ATCC_27405:0.10586)100:0.0329)92:0.01605)51:0.001464999999999994,((((((U+NrPSEgjf7OE47/Gai8zyCKYvE__Clostridium_difficile_NAP07:0.00137,AWF2kHEC/kPQV53LusA6jEiyGkQ__Clostridium_difficile_CD196:0.00137)100:0.09014,((ZdrIM47u+dLkANhnoh7Buos0194__Peptostreptococcus_stomatis_DSM_17678:0.03516,wWyanJhYyn6gtUrOA/vEv66vdkA__Peptostreptococcus_anaerobius_653-L:0.04429)100:0.03771,wmaqBnr2cQ1PBLfnqlyGFRX9gBg__Clostridium_hiranonis_TO-931_DSM_13275:0.07736)98:0.01945)81:0.01666,ELmcY2WzUTrimOOgbMPVDzBr6Mw__Clostridium_bartlettii_DSM_16795:0.09327)99:0.02735,QOqHxl+X3iCqPmhHCGLPnT5UdFs__Alkaliphilus_oremlandii_OhILAs:0.1491)23:0.00749,((r69BnuJXZ9Kwyd23r75rZdwlBjw__Clostridium_sticklandii_DSM_519:0.12205,kOlIR5bfyfLChXu8n8TS4fE6tM0__Eubacterium_yurii_subsp._margaretiae_ATCC_43715:0.16014)55:0.01264,iXR+e+f/y/xee8rn+o+a2F6zmUY__Parvimonas_micra_ATCC_33270:0.17868)26:0.00566)24:0.00532,((((dHptxAbOLmf6aIDUmVXGQTwfhcA__Clostridium_sp._M62/1:0.10556,(eAasRMCbjwG0Dqx2K2t89fc82UE__Clostridium_sp._SY8519:0.0798,D87YRh/3glncvha6btxTQjo4o8U__Ruminococcus_obeum_ATCC_29174:0.09554)72:0.01499)58:0.01236,((((LfmfKfl6zA3qG6qqo99qSYUCwl0__Clostridium_nexile_DSM_1787:0.04577,4NxW7r9Pxw36TwLBmIfQcDrJK3c__Coprococcus_comes_ATCC_27758:0.06917)87:0.01518,((D28kcB2s/pn8RXjoejFEv2SeIAM__Lachnospiraceae_bacterium_3_1_46FAA:0.02411,+DHk91lyK7LHDLHwhF+0Jfd1lNw__Ruminococcus_torques_L2-14:0.02521)50:0.00353,CF/OZIAbVIPq65aN10yZtVaFH5I__Ruminococcus_lactaris_ATCC_29176:0.02934)100:0.03537)50:0.00331,((0oaYs05P+Zlr057zhXnjLbeoURE__Dorea_formicigenerans_4_6_53AFAA:0.03079,lCPm7oqUe2mheJlr3QzIgzgXqqo__Dorea_longicatena_DSM_13814:0.03478)84:0.00951,TW1kuOy6PFeXXt6Jgitj4wcG96I__Lachnospiraceae_bacterium_5_1_57FAA:0.04376)99:0.01693)100:0.03466,(oSUp/ctEhyV4/1339Bjg2cnJ9Xk__Anaerostipes_caccae_DSM_14662,5fgL+hX4+70mEiChu7/1IIWaoYg__Anaerostipes_sp._3_2_56FAA)100:0.11371)56:0.00445)85:0.01982,kjhPyLp4esxWjYMmNGNPWugww1Q__Oribacterium_sp._oral_taxon_078_str._F0262:0.14785)93:0.02842,JCVI_PEP_metagenomic.orf.1134269553707.1:0.04823):0.00399)22:0.008265000000000007);",
- "strict_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Firmicutes",
- "phylum_outgroup": 0,
- "class": "Clostridia",
- "class_outgroup": 0,
- "order": "Clostridiales",
- "order_outgroup": 0,
- "family": "Mixed",
- "family_outgroup": 0,
- "genus": "Mixed",
- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "relaxed_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Firmicutes",
- "phylum_outgroup": 0,
- "class": "Clostridia",
- "class_outgroup": 0,
- "order": "Clostridiales",
- "order_outgroup": 0,
- "family": "Lachnospiraceae",
- "family_outgroup": 1,
- "genus": "Mixed",
- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "strict_taxon_id": 186802,
- "strict_taxon": "Clostridiales",
- "relaxed_taxon_id": 186803,
- "relaxed_taxon": "Lachnospiraceae"
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553725.1",
- "tree": "(PSGZ0hqh9fzKZDXVNLxi49pqyUo__Syntrophus_aciditrophicus_SB,((((U/ByRAzAGJNOwlZ6g21AS+kXgzk__Bifidobacterium_animalis_subsp._lactis_AD011,GrEwmdF1L++cvAB00DGoZun2pcQ__Bifidobacterium_animalis_subsp._lactis_BB-12)100:0.04004,njaXH9SP5HNjhlGB9DhlbJB1hA8__Bifidobacterium_gallicum_DSM_20093:0.04238)92:0.01617,(((WjcMU4Nky5yrM08fBwMWT7mI3VI__Gardnerella_vaginalis_409-05:0.00118,NN1OSrftGXxhFeaAL28TPYRxxy4__Gardnerella_vaginalis_AMD:0.00159)77:0.00261,2oxeb6Rikjd9T6jVgsKW/a/c4kQ__Gardnerella_vaginalis_5-1:0.00567)100:0.05782,((((RNSr3vedwxq/uVC7oKpmi1RG3MI__Bifidobacterium_adolescentis_ATCC_15703:0.00371,Chadm/MPSCwOGputrMxsQg2JsXE__Bifidobacterium_adolescentis_L2-32:0.00454)97:0.01018,kgY+jxZkTf5khDIIUegwu+wF/EE__Bifidobacterium_longum_subsp._longum_JCM_1217:0.01588)70:0.0062,zcYaGAVpyo7EPtEp2ralgPNwuKs__Bifidobacterium_angulatum_DSM_20098_=_JCM_7096:0.01854)62:0.00572,(8eofARn4l6crg6eEh1das2Mdnxo__Bifidobacterium_longum_subsp._longum_ATCC_55813:0.00172,7JG6iYuLfMehOSfkZ1GnX6s6AEA__Bifidobacterium_longum_subsp._infantis_CCUG_52486:0.00103)100:0.03103)100:0.03799)36:0.00283)100:0.21699,(JCVI_PEP_metagenomic.orf.1134269553725.1:0.23674,((((y64Coku2oBNQY16864ZjyfJADOs__Ruminococcus_bromii_L2-63:0.1268,Ln0FOSWVcIP7CE8RmMO2DEnQmNA__Ethanoligenens_harbinense_YUAN-3:0.13419)98:0.03352,TZCwCSQwd2DrRlTMjjIb41EeT04__Ruminococcaceae_bacterium_D16:0.16794)56:0.00849,((((LWTFGnDDvCT4QIHU+2raSdzmVSg__Faecalibacterium_cf._prausnitzii_KLE1255:0.01246,8nZsW3Wa4qVp56bgAys9Vx7J3zU__Faecalibacterium_prausnitzii_A2-165:0.01141)46:0.00266,WzYm3hdlqqrxXh+Fnotj80a9dqQ__Faecalibacterium_prausnitzii_M21/2:0.01326)62:0.00394,VusvjvZreabVxp9gmmlwpuvlpVA__Faecalibacterium_prausnitzii_L2-6:0.0133)100:0.0742,vRG+zv7iZ/WV8pFPlWhFUxBJND0__Subdoligranulum_variabile_DSM_15176:0.09805)100:0.13097)11:0.00817,((((((MCewCfng96g1hKN3e0M3ILOo5c0__Clostridium_botulinum_F_str._230613:0.0017,(EpekyM6L3g3+//5i7pJcavSIhU8__Clostridium_botulinum_NCTC_2916:0.001,qEOYsakbBPXvuv3mNprkZcXsHeg__Clostridium_botulinum_A_str._ATCC_3502:0.00174)67:0.00104)78:0.00451,(/w1uUyXqM/C0mwl9gbXm/MXtpxk__Clostridium_botulinum_A3_str._Loch_Maree:0.00347,fWwcc865+747H8JzEzpytS/Tjwo__Clostridium_sporogenes_ATCC_15579:0.00748)37:0.00097)100:0.08355,FCMupPJLNNNgPyQuxkUloU98p+8__Clostridium_kluyveri_DSM_555:0.11851)100:0.06133,kOlIR5bfyfLChXu8n8TS4fE6tM0__Eubacterium_yurii_subsp._margaretiae_ATCC_43715:0.17522)60:0.01031,s1O7VX/7wEnrVsZwabPGUe27xaI__Eubacterium_saphenum_ATCC_49989:0.19092)34:0.01116,(((kTJutNX2MjxXZRUVR9qYLQkm/dk__Marvinbryantia_formatexigens_DSM_14469:0.10208,eAasRMCbjwG0Dqx2K2t89fc82UE__Clostridium_sp._SY8519:0.09244)80:0.01987,((((((LfmfKfl6zA3qG6qqo99qSYUCwl0__Clostridium_nexile_DSM_1787:0.0464,4NxW7r9Pxw36TwLBmIfQcDrJK3c__Coprococcus_comes_ATCC_27758:0.06855)76:0.0118,0p3CsP/6KyelG9TfV05djq28b/Q__Lachnospiraceae_bacterium_2_1_58FAA:0.05743)46:0.00332,((+DHk91lyK7LHDLHwhF+0Jfd1lNw__Ruminococcus_torques_L2-14:0.02432,D28kcB2s/pn8RXjoejFEv2SeIAM__Lachnospiraceae_bacterium_3_1_46FAA:0.02499)60:0.00415,CF/OZIAbVIPq65aN10yZtVaFH5I__Ruminococcus_lactaris_ATCC_29176:0.02872)100:0.02946)67:0.00717,((lCPm7oqUe2mheJlr3QzIgzgXqqo__Dorea_longicatena_DSM_13814:0.03532,0oaYs05P+Zlr057zhXnjLbeoURE__Dorea_formicigenerans_4_6_53AFAA:0.03025)81:0.00984,TW1kuOy6PFeXXt6Jgitj4wcG96I__Lachnospiraceae_bacterium_5_1_57FAA:0.04344)96:0.01935)100:0.03338,KSux9f/i+Tbw//SmUSCep0ad94w__Clostridium_phytofermentans_ISDg:0.11411)14:0.00136,9dxM6T91uDHWe7N6bMe58uCLoEc__Abiotrophia_defectiva_ATCC_49176:0.12678)26:0.00842)100:0.04526,(((((szBQMR9oir1YhX5GnRPcoPUAjUc__Caldicellulosiruptor_owensensis_OL:0.00407,8zmpOqKdoi5ckecIaY0U3jzZG54__Caldicellulosiruptor_kronotskyensis_2002:0.00422)62:0.00277,(7z3cPbGORv/embjcZfE5muLnQhQ__Caldicellulosiruptor_kristjanssonii_177R1B:0.00153,Ro+9QETkbM5O1XSqtYxlk/q2X3c__Caldicellulosiruptor_hydrothermalis_108:0.00123)72:0.00275)20:0.00056,+OTHEG30fCIrdxqyjgHTYjsrJck__Caldicellulosiruptor_bescii_DSM_6725:0.01048)73:0.00334,6g2KGfUx+lpzY6gM7NL2s+XWYJQ__Caldicellulosiruptor_obsidiansis_OB47:0.01392)100:0.01969,xLwSp4CiaT4iWqfIjPArm66roxo__Caldicellulosiruptor_saccharolyticus_DSM_8903:0.02658)100:0.12134)12:0.00629):0.00457)16:0.01374)48:0.02987)69:0.37164);",
- "strict_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Firmicutes",
- "phylum_outgroup": 1,
- "class": "Clostridia",
- "class_outgroup": 1,
- "order": "Mixed",
- "order_outgroup": 0,
- "family": "Mixed",
- "family_outgroup": 0,
- "genus": "Mixed",
- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "relaxed_consensus": {
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- "kingdom_outgroup": 0,
- "phylum": "Firmicutes",
- "phylum_outgroup": 1,
- "class": "Clostridia",
- "class_outgroup": 1,
- "order": "Clostridiales",
- "order_outgroup": 1,
- "family": "Mixed",
- "family_outgroup": 0,
- "genus": "Mixed",
- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "strict_taxon_id": 186801,
- "strict_taxon": "Clostridia",
- "relaxed_taxon_id": 186802,
- "relaxed_taxon": "Clostridiales",
- "bootstrap": 48
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553743.1",
- "tree": "(JCVI_PEP_metagenomic.orf.1134269553743.1,(G1dbCv74xHjXLeJ3yDtgkgfh0o0__Prochlorococcus_phage_P-SSP7:0.10622,(cBrHq6nZgbUm7igeUXLi2HYEc/E__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.11414,(Mqz2hgy71bG0fN2QIc8JgXubT2Y__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.07233,h3ToOim7rurnc+Ndmk7yVDTCbQQ__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.07374)70:0.02031):0.04358)72:0.23249);",
- "strict_consensus": {
- "kingdom": "Viruses",
- "kingdom_outgroup": 0,
- "phylum": "Mixed",
- "phylum_outgroup": 0,
- "class": "Mixed",
- "class_outgroup": 0,
- "order": "Mixed",
- "order_outgroup": 0,
- "family": "Mixed",
- "family_outgroup": 0,
- "genus": "Mixed",
- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "relaxed_consensus": {
- "kingdom": "Viruses",
- "kingdom_outgroup": 0,
- "phylum": "Marine_Viruses",
- "phylum_outgroup": 0,
- "class": "Planktonic_Viruses",
- "class_outgroup": 0,
- "order": "Chesapeak_Viruses",
- "order_outgroup": 0,
- "family": "Chesapeak_Viruses_X",
- "family_outgroup": 0,
- "genus": "Chesapeak_Viruses_XX",
- "genus_outgroup": 0,
- "species": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
- "species_outgroup": 0
- },
- "strict_taxon_id": 10239,
- "strict_taxon": "Viruses",
- "relaxed_taxon_id": -283556,
- "relaxed_taxon": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL"
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553853.1",
- "tree": "NO_TREE",
- "strict_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- },
- "relaxed_consensus": {
- "kingdom": "NO_TREE",
- "phylum": "NO_TREE",
- "class": "NO_TREE",
- "order": "NO_TREE",
- "family": "NO_TREE",
- "genus": "NO_TREE",
- "species": "NO_TREE"
- }
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269553913.1",
- "tree": "(JCVI_PEP_metagenomic.orf.1134269553913.1,(f/qi1A4VQ5ymIbSiyfqZ3LA8Cms__Octadecabacter_arcticus_238:0.01392,(X9MkELV2HUhPWJ2Z+YAbsBxsChw__Octadecabacter_arcticus_238,(ndp8RmDGYpOM6vkBh/HW2NI6/xY__Octadecabacter_arcticus_238:0.00103,((08qHODj5eNnC9/e1uQLNGL44pPc__Octadecabacter_arcticus_238:0.02175,((N9kBGsabf7Yn6oepH54l4PMP2Nc__Octadecabacter_arcticus_238:0.00296,D51mmsdZEhETZSTcNAiJojWVw1U__Octadecabacter_arcticus_238:0.00022)88:0.01629,2tM94O8qJEXOha9eofFBKkeSMUA__Octadecabacter_arcticus_238:0.0343)92:0.0094)100:0.01106,OQG8fs0Sg/wiaDIz2ci3EwQKS0w__Octadecabacter_arcticus_238):0.00312)88:0.00537)62:0.01608)94:0.09108);",
- "strict_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Proteobacteria",
- "phylum_outgroup": 0,
- "class": "Alphaproteobacteria",
- "class_outgroup": 0,
- "order": "Rhodobacterales",
- "order_outgroup": 0,
- "family": "Rhodobacteraceae",
- "family_outgroup": 0,
- "genus": "Octadecabacter",
- "genus_outgroup": 0,
- "species": "Octadecabacter arcticus 238",
- "species_outgroup": 0
- },
- "relaxed_consensus": {
- "kingdom": "Bacteria",
- "kingdom_outgroup": 0,
- "phylum": "Proteobacteria",
- "phylum_outgroup": 0,
- "class": "Alphaproteobacteria",
- "class_outgroup": 0,
- "order": "Rhodobacterales",
- "order_outgroup": 0,
- "family": "Rhodobacteraceae",
- "family_outgroup": 0,
- "genus": "Octadecabacter",
- "genus_outgroup": 0,
- "species": "Octadecabacter arcticus 238",
- "species_outgroup": 0
- },
- "strict_taxon_id": 391616,
- "strict_taxon": "Octadecabacter arcticus 238",
- "relaxed_taxon_id": 391616,
- "relaxed_taxon": "Octadecabacter arcticus 238"
- }
- {
- "name": "JCVI_PEP_metagenomic.orf.1134269554079.1",
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- "strict_consensus": {
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- "phylum": "Proteobacteria",
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- "class": "Gammaproteobacteria",
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- "species": "Mixed",
- "species_outgroup": 0
- },
- "relaxed_consensus": {
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- "phylum": "Proteobacteria",
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- "class": "Gammaproteobacteria",
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- "family": "Mixed",
- "family_outgroup": 0,
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- "genus_outgroup": 0,
- "species": "Mixed",
- "species_outgroup": 0
- },
- "strict_taxon_id": 1236,
- "strict_taxon": "Gammaproteobacteria",
- "relaxed_taxon_id": 1236,
- "relaxed_taxon": "Gammaproteobacteria",
- "bootstrap": 61
- }
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- "strict_consensus": {
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- "phylum": "Chlamydiae/Verrucomicrobia group",
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- "class": "Opitutae",
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- "order": "Puniceicoccales",
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- "family": "Puniceicoccaceae",
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- "genus_outgroup": 1,
- "species": "Coraliomargarita akajimensis DSM 45221",
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- "relaxed_consensus": {
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- "family": "Puniceicoccaceae",
- "family_outgroup": 1,
- "genus": "Coraliomargarita",
- "genus_outgroup": 1,
- "species": "Coraliomargarita akajimensis DSM 45221",
- "species_outgroup": 1
- },
- "strict_taxon_id": 583355,
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- "relaxed_taxon_id": 583355,
- "relaxed_taxon": "Coraliomargarita akajimensis DSM 45221",
- "bootstrap": 34
- }
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- "relaxed_consensus": {
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- "strict_taxon_id": 629395,
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- }
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- "phylum": "Dictyoglomi",
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- "bootstrap": 36
- }
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