/doc/LICENSE.rst

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++++++++++++++++++++
GLU SOFTWARE LICENSE
++++++++++++++++++++

Last amended: 2008-02-05

Copyright (c) 2007-2009, BioInformed LLC and the U.S. Department of Health &
Human Services. Funded by NCI under Contract N01-CO-12400.

BioInformed LLC and the U.S. Department of Health & Human Services
(“Copyright Holders”) hereby grant to the public a perpetual, irrevocable,
royalty-free non-exclusive, worldwide license to use, copy, distribute,
display and prepare derivatives of the software in source or binary forms,
with or without modification, subject only to the following conditions:

  * Redistributions of source code must retain the above copyright notice,
    this list of conditions and the following disclaimer.

  * Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.

  * Neither the name of BioInformed LLC nor the names of its contributors
    nor the U.S. Department of Health & Human Services may be used to
    endorse or promote products derived from this software without specific
    prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.

*****************************
Other licenses and legal info
*****************************

GLU would not be possible without the inclusion many wonderful open source
packages.  Their copyright notices, statements, and license terms from these
packages are included below.

h5py
====

::

    Copyright (c) 2008 Andrew Collette
    http://h5py.alfven.org
    All rights reserved.

    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are
    met:

    a. Redistributions of source code must retain the above copyright
       notice, this list of conditions and the following disclaimer.

    b. Redistributions in binary form must reproduce the above copyright
       notice, this list of conditions and the following disclaimer in the
       documentation and/or other materials provided with the
       distribution.

    c. Neither the name of the author nor the names of contributors may
       be used to endorse or promote products derived from this software
       without specific prior written permission.

    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
    "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
    LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
    A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
    OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
    SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
    LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
    DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
    THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
    OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.


HDF5
====

::

    HDF5 (Hierarchical Data Format 5) Software Library and Utilities
    Copyright 2006-2007 by The HDF Group (THG).

    NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
    Copyright 1998-2006 by the Board of Trustees of the University of Illinois.

    All rights reserved.

    Contributors: National Center for Supercomputing Applications (NCSA)
    at the University of Illinois, Fortner Software, Unidata Program
    Center (netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly
    and Mark Adler (gzip), and Digital Equipment Corporation (DEC).

    Redistribution and use in source and binary forms, with or without
    modification, are permitted for any purpose (including commercial
    purposes) provided that the following conditions are met:

       1. Redistributions of source code must retain the above copyright
    notice, this list of conditions, and the following disclaimer.
       2. Redistributions in binary form must reproduce the above
    copyright notice, this list of conditions, and the following
    disclaimer in the documentation and/or materials provided with the
    distribution.
       3. In addition, redistributions of modified forms of the source or
    binary code must carry prominent notices stating that the original
    code was changed and the date of the change.
       4. All publications or advertising materials mentioning features or
    use of this software are asked, but not required, to acknowledge that
    it was developed by The HDF Group and by the National Center for
    Supercomputing Applications at the University of Illinois at
    Urbana-Champaign and credit the contributors.
       5. Neither the name of The HDF Group, the name of the University,
    nor the name of any Contributor may be used to endorse or promote
    products derived from this software without specific prior written
    permission from THG, the University, or the Contributor, respectively.

    DISCLAIMER: THIS SOFTWARE IS PROVIDED BY THE HDF GROUP (THG) AND THE
    CONTRIBUTORS "AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR
    IMPLIED. In no event shall THG or the Contributors be liable for any
    damages suffered by the users arising out of the use of this software,
    even if advised of the possibility of such damage.

    Portions of HDF5 were developed with support from the University of
    California, Lawrence Livermore National Laboratory (UC LLNL). The
    following statement applies to those portions of the product and must
    be retained in any redistribution of source code, binaries,
    documentation, and/or accompanying materials:

    This work was partially produced at the University of California,
    Lawrence Livermore National Laboratory (UC LLNL) under contract
    no. W-7405-ENG-48 (Contract 48) between the U.S. Department of Energy
    (DOE) and The Regents of the University of California (University) for
    the operation of UC LLNL.

    DISCLAIMER: This work was prepared as an account of work sponsored by
    an agency of the United States Government. Neither the United States
    Government nor the University of California nor any of their
    employees, makes any warranty, express or implied, or assumes any
    liability or responsibility for the accuracy, completeness, or
    usefulness of any information, apparatus, product, or process
    disclosed, or represents that its use would not infringe privately-
    owned rights. Reference herein to any specific commercial products,
    process, or service by trade name, trademark, manufacturer, or
    otherwise, does not necessarily constitute or imply its endorsement,
    recommendation, or favoring by the United States Government or the
    University of California. The views and opinions of authors expressed
    herein do not necessarily state or reflect those of the United States
    Government or the University of California, and shall not be used for
    advertising or product endorsement purposes.

PyTables
========

::

    Copyright Notice and Statement for PyTables Software Library and Utilities:

    Copyright (c) 2002, 2003, 2004  Francesc Altet
    Copyright (c) 2005, 2006, 2007  Carabos Coop. V.
    All rights reserved.

    Redistribution and use in source and binary forms, with or without
    modification, are permitted provided that the following conditions are
    met:

    a. Redistributions of source code must retain the above copyright
       notice, this list of conditions and the following disclaimer.

    b. Redistributions in binary form must reproduce the above copyright
       notice, this list of conditions and the following disclaimer in the
       documentation and/or other materials provided with the
       distribution.

    c. Neither the name of the Carabos Coop. V. nor the names of its
       contributors may be used to endorse or promote products derived
       from this software without specific prior written permission.

    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
    "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
    LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
    A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
    OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
    SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
    LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
    DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
    THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
    (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
    OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Numpy
=====

Scipy
=====

zlib
====

bzlib
=====