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/doc/images/gallery/gallery.rna_seq.svg

https://code.google.com/p/ruffus/
SVG | 672 lines | 562 code | 0 blank | 110 comment | 0 complexity | 39f59b7614c5538dbf169f79ef74c659 MD5 | raw file
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288<g id="edge55" class="edge"><title>t18&#45;&gt;t19</title>
289<path style="fill:none;stroke:gray;" d="M733,-898C749,-891 767,-883 783,-876"/>
290<polygon style="fill:gray;stroke:gray;" points="785.015,-878.964 793,-872 782.415,-872.464 785.015,-878.964"/>
291</g>
292<!-- t25 -->
293<g id="node30" class="node"><title>t25</title>
294<polygon style="fill:#90ee90;stroke:green;" points="454.138,-736.774 333,-751.92 211.862,-736.774 211.975,-712.266 454.025,-712.266 454.138,-736.774"/>
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296<text text-anchor="middle" x="333" y="-723.5" style="font-family:Times New Roman;font-size:20.00;">FiltoutDualRepeats</text>
297</g>
298<!-- t21&#45;&gt;t25 -->
299<g id="edge93" class="edge"><title>t21&#45;&gt;t25</title>
300<path style="fill:none;stroke:gray;" d="M196,-778C218,-770 245,-761 268,-752"/>
301<polygon style="fill:gray;stroke:gray;" points="269.427,-755.226 278,-749 267.416,-748.521 269.427,-755.226"/>
302</g>
303<!-- t21&#45;&gt;t46 -->
304<g id="edge121" class="edge"><title>t21&#45;&gt;t46</title>
305<path style="fill:none;stroke:gray;" d="M91,-778C80,-772 70,-765 62,-756 34,-720 37,-701 37,-656 37,-656 37,-656 37,-216 37,-192 43,-176 125,-140 155,-126 236,-115 299,-108"/>
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307</g>
308<!-- t24 -->
309<g id="node29" class="node"><title>t24</title>
310<polygon style="fill:#90ee90;stroke:green;" points="398,-814 276,-814 272,-810 272,-778 394,-778 398,-782 398,-814"/>
311<polyline style="fill:none;stroke:green;" points="394,-810 272,-810 "/>
312<polyline style="fill:none;stroke:green;" points="394,-810 394,-778 "/>
313<polyline style="fill:none;stroke:green;" points="394,-810 398,-814 "/>
314<text text-anchor="middle" x="335" y="-789.5" style="font-family:Times New Roman;font-size:20.00;">make_replists</text>
315</g>
316<!-- t24&#45;&gt;t25 -->
317<g id="edge27" class="edge"><title>t24&#45;&gt;t25</title>
318<path style="fill:none;stroke:gray;" d="M334,-778C334,-774 334,-770 334,-766"/>
319<polygon style="fill:gray;stroke:gray;" points="337.5,-766 334,-756 330.5,-766 337.5,-766"/>
320</g>
321<!-- t26 -->
322<g id="node32" class="node"><title>t26</title>
323<polygon style="fill:#90ee90;stroke:green;" points="308.068,-662.774 194,-677.92 79.932,-662.774 80.0385,-638.266 307.961,-638.266 308.068,-662.774"/>
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325<text text-anchor="middle" x="194" y="-649.5" style="font-family:Times New Roman;font-size:20.00;">prepare_raw_files</text>
326</g>
327<!-- t25&#45;&gt;t26 -->
328<g id="edge29" class="edge"><title>t25&#45;&gt;t26</title>
329<path style="fill:none;stroke:gray;" d="M292,-708C277,-700 259,-691 243,-682"/>
330<polygon style="fill:gray;stroke:gray;" points="244.441,-678.797 234,-677 241.042,-684.916 244.441,-678.797"/>
331</g>
332<!-- t34 -->
333<g id="node64" class="node"><title>t34</title>
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335<polyline style="fill:none;stroke:green;" points="661,-670 561,-670 "/>
336<polyline style="fill:none;stroke:green;" points="661,-670 661,-638 "/>
337<polyline style="fill:none;stroke:green;" points="661,-670 665,-674 "/>
338<text text-anchor="middle" x="613" y="-649.5" style="font-family:Times New Roman;font-size:20.00;">fill_islands</text>
339</g>
340<!-- t25&#45;&gt;t34 -->
341<g id="edge61" class="edge"><title>t25&#45;&gt;t34</title>
342<path style="fill:none;stroke:gray;" d="M415,-708C458,-696 511,-682 551,-672"/>
343<polygon style="fill:gray;stroke:gray;" points="551.881,-675.393 561,-670 550.508,-668.529 551.881,-675.393"/>
344</g>
345<!-- t37 -->
346<g id="node70" class="node"><title>t37</title>
347<polygon style="fill:#90ee90;stroke:green;" points="794,-484 582,-484 578,-480 578,-448 790,-448 794,-452 794,-484"/>
348<polyline style="fill:none;stroke:green;" points="790,-480 578,-480 "/>
349<polyline style="fill:none;stroke:green;" points="790,-480 790,-448 "/>
350<polyline style="fill:none;stroke:green;" points="790,-480 794,-484 "/>
351<text text-anchor="middle" x="686" y="-459.5" style="font-family:Times New Roman;font-size:20.00;">Reallocate_Repeat_Ends</text>
352</g>
353<!-- t25&#45;&gt;t37 -->
354<g id="edge107" class="edge"><title>t25&#45;&gt;t37</title>
355<path style="fill:none;stroke:gray;" d="M353,-708C393,-666 486,-573 577,-514 592,-504 610,-495 626,-488"/>
356<polygon style="fill:gray;stroke:gray;" points="628.015,-490.964 636,-484 625.415,-484.464 628.015,-490.964"/>
357</g>
358<!-- t25&#45;&gt;t46 -->
359<g id="edge119" class="edge"><title>t25&#45;&gt;t46</title>
360<path style="fill:none;stroke:gray;" d="M331,-708C326,-643 311,-446 311,-282 311,-282 311,-282 311,-216 311,-181 334,-147 354,-125"/>
361<polygon style="fill:gray;stroke:gray;" points="356.404,-127.546 361,-118 351.454,-122.596 356.404,-127.546"/>
362</g>
363<!-- t27 -->
364<g id="node34" class="node"><title>t27</title>
365<polygon style="fill:#90ee90;stroke:green;" points="247,-608 135,-608 131,-604 131,-572 243,-572 247,-576 247,-608"/>
366<polyline style="fill:none;stroke:green;" points="243,-604 131,-604 "/>
367<polyline style="fill:none;stroke:green;" points="243,-604 243,-572 "/>
368<polyline style="fill:none;stroke:green;" points="243,-604 247,-608 "/>
369<text text-anchor="middle" x="189" y="-583.5" style="font-family:Times New Roman;font-size:20.00;">bowtie_run2</text>
370</g>
371<!-- t26&#45;&gt;t27 -->
372<g id="edge31" class="edge"><title>t26&#45;&gt;t27</title>
373<path style="fill:none;stroke:gray;" d="M192,-634C192,-629 192,-624 191,-618"/>
374<polygon style="fill:gray;stroke:gray;" points="194.478,-617.602 190,-608 187.512,-618.299 194.478,-617.602"/>
375</g>
376<!-- t28 -->
377<g id="node36" class="node"><title>t28</title>
378<polygon style="fill:#90ee90;stroke:green;" points="244,-550 134,-550 130,-546 130,-514 240,-514 244,-518 244,-550"/>
379<polyline style="fill:none;stroke:green;" points="240,-546 130,-546 "/>
380<polyline style="fill:none;stroke:green;" points="240,-546 240,-514 "/>
381<polyline style="fill:none;stroke:green;" points="240,-546 244,-550 "/>
382<text text-anchor="middle" x="187" y="-525.5" style="font-family:Times New Roman;font-size:20.00;">SAM2BAM</text>
383</g>
384<!-- t27&#45;&gt;t28 -->
385<g id="edge33" class="edge"><title>t27&#45;&gt;t28</title>
386<path style="fill:none;stroke:gray;" d="M188,-572C188,-568 188,-564 188,-560"/>
387<polygon style="fill:gray;stroke:gray;" points="191.5,-560 188,-550 184.5,-560 191.5,-560"/>
388</g>
389<!-- t29 -->
390<g id="node38" class="node"><title>t29</title>
391<polygon style="fill:#90ee90;stroke:green;" points="259.953,-472.774 185,-487.92 110.047,-472.774 110.117,-448.266 259.883,-448.266 259.953,-472.774"/>
392<polygon style="fill:none;stroke:green;" points="263.963,-476.044 185,-492.001 106.037,-476.044 106.128,-444.266 263.872,-444.266 263.963,-476.044"/>
393<text text-anchor="middle" x="185" y="-459.5" style="font-family:Times New Roman;font-size:20.00;">splitby_chr</text>
394</g>
395<!-- t28&#45;&gt;t29 -->
396<g id="edge35" class="edge"><title>t28&#45;&gt;t29</title>
397<path style="fill:none;stroke:gray;" d="M186,-514C186,-510 186,-506 186,-502"/>
398<polygon style="fill:gray;stroke:gray;" points="189.5,-502 186,-492 182.5,-502 189.5,-502"/>
399</g>
400<!-- t30 -->
401<g id="node40" class="node"><title>t30</title>
402<polygon style="fill:#90ee90;stroke:green;" points="292,-392 80,-392 76,-388 76,-356 288,-356 292,-360 292,-392"/>
403<polyline style="fill:none;stroke:green;" points="288,-388 76,-388 "/>
404<polyline style="fill:none;stroke:green;" points="288,-388 288,-356 "/>
405<polyline style="fill:none;stroke:green;" points="288,-388 292,-392 "/>
406<text text-anchor="middle" x="184" y="-367.5" style="font-family:Times New Roman;font-size:20.00;">create_by_chr_raw_files</text>
407</g>
408<!-- t29&#45;&gt;t30 -->
409<g id="edge37" class="edge"><title>t29&#45;&gt;t30</title>
410<path style="fill:none;stroke:gray;" d="M185,-444C184,-431 184,-416 184,-402"/>
411<polygon style="fill:gray;stroke:gray;" points="187.5,-402 184,-392 180.5,-402 187.5,-402"/>
412</g>
413<!-- t31 -->
414<g id="node42" class="node"><title>t31</title>
415<polygon style="fill:#90ee90;stroke:green;" points="270,-300 102,-300 98,-296 98,-264 266,-264 270,-268 270,-300"/>
416<polyline style="fill:none;stroke:green;" points="266,-296 98,-296 "/>
417<polyline style="fill:none;stroke:green;" points="266,-296 266,-264 "/>
418<polyline style="fill:none;stroke:green;" points="266,-296 270,-300 "/>
419<text text-anchor="middle" x="184" y="-275.5" style="font-family:Times New Roman;font-size:20.00;">run_by_chr_bowtie</text>
420</g>
421<!-- t30&#45;&gt;t31 -->
422<g id="edge39" class="edge"><title>t30&#45;&gt;t31</title>
423<path style="fill:none;stroke:gray;" d="M184,-356C184,-343 184,-325 184,-310"/>
424<polygon style="fill:gray;stroke:gray;" points="187.5,-310 184,-300 180.5,-310 187.5,-310"/>
425</g>
426<!-- t32 -->
427<g id="node44" class="node"><title>t32</title>
428<polygon style="fill:#90ee90;stroke:green;" points="287,-234 85,-234 81,-230 81,-198 283,-198 287,-202 287,-234"/>
429<polyline style="fill:none;stroke:green;" points="283,-230 81,-230 "/>
430<polyline style="fill:none;stroke:green;" points="283,-230 283,-198 "/>
431<polyline style="fill:none;stroke:green;" points="283,-230 287,-234 "/>
432<text text-anchor="middle" x="184" y="-209.5" style="font-family:Times New Roman;font-size:20.00;">by_chr_SAM_to_BAM</text>
433</g>
434<!-- t31&#45;&gt;t32 -->
435<g id="edge41" class="edge"><title>t31&#45;&gt;t32</title>
436<path style="fill:none;stroke:gray;" d="M184,-264C184,-258 184,-251 184,-244"/>
437<polygon style="fill:gray;stroke:gray;" points="187.5,-244 184,-234 180.5,-244 187.5,-244"/>
438</g>
439<!-- t33 -->
440<g id="node48" class="node"><title>t33</title>
441<polygon style="fill:#90ee90;stroke:green;" points="234,-176 138,-176 134,-172 134,-140 230,-140 234,-144 234,-176"/>
442<polyline style="fill:none;stroke:green;" points="230,-172 134,-172 "/>
443<polyline style="fill:none;stroke:green;" points="230,-172 230,-140 "/>
444<polyline style="fill:none;stroke:green;" points="230,-172 234,-176 "/>
445<text text-anchor="middle" x="184" y="-151.5" style="font-family:Times New Roman;font-size:20.00;">ccheckhits</text>
446</g>
447<!-- t32&#45;&gt;t33 -->
448<g id="edge45" class="edge"><title>t32&#45;&gt;t33</title>
449<path style="fill:none;stroke:gray;" d="M184,-198C184,-194 184,-190 184,-186"/>
450<polygon style="fill:gray;stroke:gray;" points="187.5,-186 184,-176 180.5,-186 187.5,-186"/>
451</g>
452<!-- t2&#45;&gt;t33 -->
453<g id="edge95" class="edge"><title>t2&#45;&gt;t33</title>
454<path style="fill:none;stroke:gray;" d="M416,-779C413,-779 410,-778 407,-778 244,-755 57,-820 57,-656 57,-656 57,-656 57,-282 57,-244 48,-226 72,-198 80,-189 102,-181 124,-173"/>
455<polygon style="fill:gray;stroke:gray;" points="125.427,-176.226 134,-170 123.416,-169.521 125.427,-176.226"/>
456</g>
457<!-- t23 -->
458<g id="node62" class="node"><title>t23</title>
459<polygon style="fill:#90ee90;stroke:green;" points="697,-748 533,-748 529,-744 529,-712 693,-712 697,-716 697,-748"/>
460<polyline style="fill:none;stroke:green;" points="693,-744 529,-744 "/>
461<polyline style="fill:none;stroke:green;" points="693,-744 693,-712 "/>
462<polyline style="fill:none;stroke:green;" points="693,-744 697,-748 "/>
463<text text-anchor="middle" x="613" y="-723.5" style="font-family:Times New Roman;font-size:20.00;">create_island_seed</text>
464</g>
465<!-- t2&#45;&gt;t23 -->
466<g id="edge99" class="edge"><title>t2&#45;&gt;t23</title>
467<path style="fill:none;stroke:gray;" d="M540,-778C551,-771 564,-762 576,-754"/>
468<polygon style="fill:gray;stroke:gray;" points="578.621,-756.459 585,-748 574.738,-750.635 578.621,-756.459"/>
469</g>
470<!-- t38 -->
471<g id="node76" class="node"><title>t38</title>
472<polygon style="fill:#90ee90;stroke:green;" points="333.879,-361.794 485,-334.5 636.121,-361.794 635.98,-405.956 334.02,-405.956 333.879,-361.794"/>
473<polygon style="fill:none;stroke:green;" points="329.868,-358.453 485,-330.435 640.132,-358.453 639.967,-409.956 330.033,-409.956 329.868,-358.453"/>
474<text text-anchor="middle" x="485" y="-367.5" style="font-family:Times New Roman;font-size:20.00;">make_karyotype_file_for_circos</text>
475</g>
476<!-- t2&#45;&gt;t38 -->
477<g id="edge113" class="edge"><title>t2&#45;&gt;t38</title>
478<path style="fill:none;stroke:gray;" d="M512,-778C507,-716 494,-513 488,-420"/>
479<polygon style="fill:gray;stroke:gray;" points="491.478,-419.602 487,-410 484.512,-420.299 491.478,-419.602"/>
480</g>
481<!-- t33&#45;&gt;t46 -->
482<g id="edge117" class="edge"><title>t33&#45;&gt;t46</title>
483<path style="fill:none;stroke:gray;" d="M234,-143C257,-136 285,-128 309,-121"/>
484<polygon style="fill:gray;stroke:gray;" points="310.427,-124.226 319,-118 308.416,-117.521 310.427,-124.226"/>
485</g>
486<!-- t44 -->
487<g id="node52" class="node"><title>t44</title>
488<polygon style="fill:#90ee90;stroke:green;" points="147,-1368 49,-1368 45,-1364 45,-1332 143,-1332 147,-1336 147,-1368"/>
489<polyline style="fill:none;stroke:green;" points="143,-1364 45,-1364 "/>
490<polyline style="fill:none;stroke:green;" points="143,-1364 143,-1332 "/>
491<polyline style="fill:none;stroke:green;" points="143,-1364 147,-1368 "/>
492<text text-anchor="middle" x="96" y="-1343.5" style="font-family:Times New Roman;font-size:20.00;">velvet_run</text>
493</g>
494<!-- t43&#45;&gt;t44 -->
495<g id="edge49" class="edge"><title>t43&#45;&gt;t44</title>
496<path style="fill:none;stroke:gray;" d="M116,-1390C114,-1386 111,-1382 109,-1377"/>
497<polygon style="fill:gray;stroke:gray;" points="112.26,-1375.72 105,-1368 105.863,-1378.56 112.26,-1375.72"/>
498</g>
499<!-- t45 -->
500<g id="node54" class="node"><title>t45</title>
501<polygon style="fill:#90ee90;stroke:green;" points="112,-1178 20,-1178 16,-1174 16,-1142 108,-1142 112,-1146 112,-1178"/>
502<polyline style="fill:none;stroke:green;" points="108,-1174 16,-1174 "/>
503<polyline style="fill:none;stroke:green;" points="108,-1174 108,-1142 "/>
504<polyline style="fill:none;stroke:green;" points="108,-1174 112,-1178 "/>
505<text text-anchor="middle" x="64" y="-1153.5" style="font-family:Times New Roman;font-size:20.00;">oases_run</text>
506</g>
507<!-- t44&#45;&gt;t45 -->
508<g id="edge51" class="edge"><title>t44&#45;&gt;t45</title>
509<path style="fill:none;stroke:gray;" d="M93,-1332C88,-1298 75,-1227 69,-1188"/>
510<polygon style="fill:gray;stroke:gray;" points="72.3933,-1187.12 67,-1178 65.5292,-1188.49 72.3933,-1187.12"/>
511</g>
512<!-- t45&#45;&gt;t46 -->
513<g id="edge79" class="edge"><title>t45&#45;&gt;t46</title>
514<path style="fill:none;stroke:gray;" d="M52,-1142C38,-1120 17,-1081 17,-1044 17,-1044 17,-1044 17,-216 17,-178 24,-161 54,-140 74,-126 208,-113 299,-106"/>
515<polygon style="fill:gray;stroke:gray;" points="299.398,-109.478 309,-105 298.701,-102.512 299.398,-109.478"/>
516</g>
517<!-- t20&#45;&gt;t34 -->
518<g id="edge103" class="edge"><title>t20&#45;&gt;t34</title>
519<path style="fill:none;stroke:gray;" d="M758,-712C731,-701 698,-689 669,-678"/>
520<polygon style="fill:gray;stroke:gray;" points="670.56,-674.863 660,-674 667.717,-681.26 670.56,-674.863"/>
521</g>
522<!-- t20&#45;&gt;t46 -->
523<g id="edge123" class="edge"><title>t20&#45;&gt;t46</title>
524<path style="fill:none;stroke:gray;" d="M829,-712C858,-687 903,-641 903,-590 903,-590 903,-590 903,-216 903,-171 608,-128 461,-109"/>
525<polygon style="fill:gray;stroke:gray;" points="461.299,-105.512 451,-108 460.602,-112.478 461.299,-105.512"/>
526</g>
527<!-- t19&#45;&gt;t22 -->
528<g id="edge57" class="edge"><title>t19&#45;&gt;t22</title>
529<path style="fill:none;stroke:gray;" d="M795,-836C783,-830 769,-824 756,-818"/>
530<polygon style="fill:gray;stroke:gray;" points="757.56,-814.863 747,-814 754.717,-821.26 757.56,-814.863"/>
531</g>
532<!-- t19&#45;&gt;t46 -->
533<g id="edge125" class="edge"><title>t19&#45;&gt;t46</title>
534<path style="fill:none;stroke:gray;" d="M859,-836C885,-814 923,-774 923,-730 923,-730 923,-730 923,-216 923,-158 995,-197 760,-140 706,-126 556,-113 461,-106"/>
535<polygon style="fill:gray;stroke:gray;" points="461.299,-102.512 451,-105 460.602,-109.478 461.299,-102.512"/>
536</g>
537<!-- t22&#45;&gt;t23 -->
538<g id="edge59" class="edge"><title>t22&#45;&gt;t23</title>
539<path style="fill:none;stroke:gray;" d="M681,-778C671,-771 658,-762 647,-754"/>
540<polygon style="fill:gray;stroke:gray;" points="649.1,-751.2 639,-748 644.9,-756.8 649.1,-751.2"/>
541</g>
542<!-- t23&#45;&gt;t34 -->
543<g id="edge101" class="edge"><title>t23&#45;&gt;t34</title>
544<path style="fill:none;stroke:gray;" d="M613,-712C613,-703 613,-694 613,-684"/>
545<polygon style="fill:gray;stroke:gray;" points="616.5,-684 613,-674 609.5,-684 616.5,-684"/>
546</g>
547<!-- t35 -->
548<g id="node66" class="node"><title>t35</title>
549<polygon style="fill:#90ee90;stroke:green;" points="864,-608 602,-608 598,-604 598,-572 860,-572 864,-576 864,-608"/>
550<polyline style="fill:none;stroke:green;" points="860,-604 598,-604 "/>
551<polyline style="fill:none;stroke:green;" points="860,-604 860,-572 "/>
552<polyline style="fill:none;stroke:green;" points="860,-604 864,-608 "/>
553<text text-anchor="middle" x="731" y="-583.5" style="font-family:Times New Roman;font-size:20.00;">make_fasta_for_RepeatMasker</text>
554</g>
555<!-- t34&#45;&gt;t35 -->
556<g id="edge63" class="edge"><title>t34&#45;&gt;t35</title>
557<path style="fill:none;stroke:gray;" d="M645,-638C659,-631 675,-621 689,-613"/>
558<polygon style="fill:gray;stroke:gray;" points="690.958,-615.916 698,-608 687.559,-609.797 690.958,-615.916"/>
559</g>
560<!-- t34&#45;&gt;t37 -->
561<g id="edge105" class="edge"><title>t34&#45;&gt;t37</title>
562<path style="fill:none;stroke:gray;" d="M602,-638C597,-629 592,-618 589,-608 580,-567 571,-548 593,-514 600,-504 610,-496 620,-489"/>
563<polygon style="fill:gray;stroke:gray;" points="621.958,-491.916 629,-484 618.559,-485.797 621.958,-491.916"/>
564</g>
565<!-- t39 -->
566<g id="node72" class="node"><title>t39</title>
567<polygon style="fill:none;stroke:blue;" points="884,-392 682,-392 678,-388 678,-356 880,-356 884,-360 884,-392"/>
568<polyline style="fill:none;stroke:blue;" points="880,-388 678,-388 "/>
569<polyline style="fill:none;stroke:blue;" points="880,-388 880,-356 "/>
570<polyline style="fill:none;stroke:blue;" points="880,-388 884,-392 "/>
571<text text-anchor="middle" x="781" y="-367.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">remove_simple_repeats</text>
572</g>
573<!-- t34&#45;&gt;t39 -->
574<g id="edge109" class="edge"><title>t34&#45;&gt;t39</title>
575<path style="fill:none;stroke:gray;" d="M665,-654C733,-650 847,-639 873,-608 926,-544 849,-445 806,-399"/>
576<polygon style="fill:gray;stroke:gray;" points="808.546,-396.596 799,-392 803.596,-401.546 808.546,-396.596"/>
577</g>
578<!-- t40 -->
579<g id="node74" class="node"><title>t40</title>
580<polygon style="fill:none;stroke:blue;" points="750.217,-288.774 659,-303.92 567.783,-288.774 567.868,-264.266 750.132,-264.266 750.217,-288.774"/>
581<polygon style="fill:none;stroke:blue;" points="754.229,-292.162 659,-307.975 563.771,-292.162 563.882,-260.266 754.118,-260.266 754.229,-292.162"/>
582<text text-anchor="middle" x="659" y="-275.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">report_islands</text>
583</g>
584<!-- t34&#45;&gt;t40 -->
585<g id="edge111" class="edge"><title>t34&#45;&gt;t40</title>
586<path style="fill:none;stroke:gray;" d="M597,-638C590,-629 583,-619 579,-608 554,-537 524,-499 569,-440 592,-410 626,-446 649,-418 662,-403 662,-353 661,-318"/>
587<polygon style="fill:gray;stroke:gray;" points="664.5,-318 661,-308 657.5,-318 664.5,-318"/>
588</g>
589<!-- t36 -->
590<g id="node68" class="node"><title>t36</title>
591<polygon style="fill:#90ee90;stroke:green;" points="852,-550 606,-550 602,-546 602,-514 848,-514 852,-518 852,-550"/>
592<polyline style="fill:none;stroke:green;" points="848,-546 602,-546 "/>
593<polyline style="fill:none;stroke:green;" points="848,-546 848,-514 "/>
594<polyline style="fill:none;stroke:green;" points="848,-546 852,-550 "/>
595<text text-anchor="middle" x="727" y="-525.5" style="font-family:Times New Roman;font-size:20.00;">run_RepeatMasker_on_reads</text>
596</g>
597<!-- t35&#45;&gt;t36 -->
598<g id="edge65" class="edge"><title>t35&#45;&gt;t36</title>
599<path style="fill:none;stroke:gray;" d="M730,-572C730,-568 730,-564 729,-560"/>
600<polygon style="fill:gray;stroke:gray;" points="732.478,-559.602 728,-550 725.512,-560.299 732.478,-559.602"/>
601</g>
602<!-- t36&#45;&gt;t37 -->
603<g id="edge67" class="edge"><title>t36&#45;&gt;t37</title>
604<path style="fill:none;stroke:gray;" d="M716,-514C712,-508 707,-500 703,-493"/>
605<polygon style="fill:gray;stroke:gray;" points="705.916,-491.042 698,-484 699.797,-494.441 705.916,-491.042"/>
606</g>
607<!-- t37&#45;&gt;t39 -->
608<g id="edge69" class="edge"><title>t37&#45;&gt;t39</title>
609<path style="fill:none;stroke:gray;" d="M705,-448C719,-434 738,-415 754,-399"/>
610<polygon style="fill:gray;stroke:gray;" points="756.779,-401.219 762,-392 752.169,-395.951 756.779,-401.219"/>
611</g>
612<!-- t37&#45;&gt;t38 -->
613<g id="edge73" class="edge"><title>t37&#45;&gt;t38</title>
614<path style="fill:none;stroke:gray;" d="M646,-448C626,-438 599,-426 573,-414"/>
615<polygon style="fill:gray;stroke:gray;" points="574.56,-410.863 564,-410 571.717,-417.26 574.56,-410.863"/>
616</g>
617<!-- t39&#45;&gt;t40 -->
618<g id="edge71" class="edge"><title>t39&#45;&gt;t40</title>
619<path style="fill:none;stroke:blue;" d="M757,-356C739,-343 715,-324 695,-309"/>
620<polygon style="fill:blue;stroke:blue;" points="697.1,-306.2 687,-303 692.9,-311.8 697.1,-306.2"/>
621</g>
622<!-- t41 -->
623<g id="node78" class="node"><title>t41</title>
624<polygon style="fill:none;stroke:blue;" points="585,-234 389,-234 385,-230 385,-198 581,-198 585,-202 585,-234"/>
625<polyline style="fill:none;stroke:blue;" points="581,-230 385,-230 "/>
626<polyline style="fill:none;stroke:blue;" points="581,-230 581,-198 "/>
627<polyline style="fill:none;stroke:blue;" points="581,-230 585,-234 "/>
628<text text-anchor="middle" x="485" y="-209.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">make_circos_conf_file</text>
629</g>
630<!-- t40&#45;&gt;t41 -->
631<g id="edge75" class="edge"><title>t40&#45;&gt;t41</title>
632<path style="fill:none;stroke:blue;" d="M602,-260C583,-253 561,-245 542,-238"/>
633<polygon style="fill:blue;stroke:blue;" points="543.56,-234.863 533,-234 540.717,-241.26 543.56,-234.863"/>
634</g>
635<!-- t38&#45;&gt;t41 -->
636<g id="edge115" class="edge"><title>t38&#45;&gt;t41</title>
637<path style="fill:none;stroke:gray;" d="M485,-330C485,-303 485,-268 485,-244"/>
638<polygon style="fill:gray;stroke:gray;" points="488.5,-244 485,-234 481.5,-244 488.5,-244"/>
639</g>
640<!-- t42 -->
641<g id="node80" class="node"><title>t42</title>
642<polygon style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="531,-176 371,-176 367,-172 367,-140 527,-140 531,-144 531,-176"/>
643<polyline style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="527,-172 367,-172 "/>
644<polyline style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="527,-172 527,-140 "/>
645<polyline style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="527,-172 531,-176 "/>
646<text text-anchor="middle" x="449" y="-151.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">run_circos_islands</text>
647</g>
648<!-- t41&#45;&gt;t42 -->
649<g id="edge77" class="edge"><title>t41&#45;&gt;t42</title>
650<path style="fill:none;stroke:blue;" d="M474,-198C472,-194 469,-189 466,-185"/>
651<polygon style="fill:blue;stroke:blue;" points="468.459,-182.379 460,-176 462.635,-186.262 468.459,-182.379"/>
652</g>
653<!-- t42&#45;&gt;t46 -->
654<g id="edge81" class="edge"><title>t42&#45;&gt;t46</title>
655<path style="fill:none;stroke:blue;" d="M428,-140C422,-135 416,-130 410,-125"/>
656<polygon style="fill:blue;stroke:blue;" points="411.831,-121.951 402,-118 407.221,-127.219 411.831,-121.951"/>
657</g>
658<!-- t47 -->
659<g id="node85" class="node"><title>t47</title>
660<polygon style="fill:#fff68f;stroke:black;" points="456,-60 308,-60 304,-56 304,-24 452,-24 456,-28 456,-60"/>
661<polyline style="fill:none;stroke:black;" points="452,-56 304,-56 "/>
662<polyline style="fill:none;stroke:black;" points="452,-56 452,-24 "/>
663<polyline style="fill:none;stroke:black;" points="452,-56 456,-60 "/>
664<text text-anchor="middle" x="380" y="-35.5" style="font-family:Times New Roman;font-size:20.00;">target_final_task</text>
665</g>
666<!-- t46&#45;&gt;t47 -->
667<g id="edge83" class="edge"><title>t46&#45;&gt;t47</title>
668<path style="fill:none;stroke:blue;" d="M380,-82C380,-78 380,-74 380,-70"/>
669<polygon style="fill:blue;stroke:blue;" points="383.5,-70 380,-60 376.5,-70 383.5,-70"/>
670</g>
671</g>
672</svg>