/doc/images/gallery/gallery.rna_seq.svg

https://code.google.com/p/ruffus/ · SVG · 672 lines · 562 code · 0 blank · 110 comment · 0 complexity · 39f59b7614c5538dbf169f79ef74c659 MD5 · raw file 

    

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  232. <!-- t15&#45;&gt;t16 -->
    233. 

  233. <g id="edge19" class="edge"><title>t15&#45;&gt;t16</title>
    234. 

  234. <path style="fill:none;stroke:gray;" d="M491,-1084C492,-1080 494,-1076 495,-1072"/>
    235. 

  235. <polygon style="fill:gray;stroke:gray;" points="498.536,-1072.58 499,-1062 492.036,-1069.98 498.536,-1072.58"/>
    236. 

  236. </g>
    237. 

  237. <!-- t16&#45;&gt;t17 -->
    238. 

  238. <g id="edge21" class="edge"><title>t16&#45;&gt;t17</title>
    239. 

  239. <path style="fill:none;stroke:gray;" d="M550,-1026C564,-1020 580,-1014 595,-1008"/>
    240. 

  240. <polygon style="fill:gray;stroke:gray;" points="596.283,-1011.26 604,-1004 593.44,-1004.86 596.283,-1011.26"/>
    241. 

  241. </g>
    242. 

  242. <!-- t18 -->
    243. 

  243. <g id="node25" class="node"><title>t18</title>
    244. 

  244. <polygon style="fill:#90ee90;stroke:green;" points="902.126,-926.774 682,-941.92 461.874,-926.774 462.079,-902.266 901.921,-902.266 902.126,-926.774"/>
    245. 

  245. <polygon style="fill:none;stroke:green;" points="906.148,-930.506 682,-945.93 457.852,-930.506 458.122,-898.266 905.878,-898.266 906.148,-930.506"/>
    246. 

  246. <text text-anchor="middle" x="682" y="-913.5" style="font-family:Times New Roman;font-size:20.00;">prepare_raw_files_post_xenoMRNA</text>
    247. 

  247. </g>
    248. 

  248. <!-- t17&#45;&gt;t18 -->
    249. 

  249. <g id="edge23" class="edge"><title>t17&#45;&gt;t18</title>
    250. 

  250. <path style="fill:none;stroke:gray;" d="M657,-968C659,-964 662,-959 664,-955"/>
    251. 

  251. <polygon style="fill:gray;stroke:gray;" points="667.203,-956.441 669,-946 661.084,-953.042 667.203,-956.441"/>
    252. 

  252. </g>
    253. 

  253. <!-- t21 -->
    254. 

  254. <g id="node27" class="node"><title>t21</title>
    255. 

  255. <polygon style="fill:#90ee90;stroke:green;" points="254,-814 40,-814 36,-810 36,-778 250,-778 254,-782 254,-814"/>
    256. 

  256. <polyline style="fill:none;stroke:green;" points="250,-810 36,-810 "/>
    257. 

  257. <polyline style="fill:none;stroke:green;" points="250,-810 250,-778 "/>
    258. 

  258. <polyline style="fill:none;stroke:green;" points="250,-810 254,-814 "/>
    259. 

  259. <text text-anchor="middle" x="145" y="-789.5" style="font-family:Times New Roman;font-size:20.00;">bowtie_run_multi_onehit</text>
    260. 

  260. </g>
    261. 

  261. <!-- t18&#45;&gt;t21 -->
    262. 

  262. <g id="edge25" class="edge"><title>t18&#45;&gt;t21</title>
    263. 

  263. <path style="fill:none;stroke:gray;" d="M588,-898C487,-875 331,-839 233,-816"/>
    264. 

  264. <polygon style="fill:gray;stroke:gray;" points="233.492,-812.529 223,-814 232.119,-819.393 233.492,-812.529"/>
    265. 

  265. </g>
    266. 

  266. <!-- t20 -->
    267. 

  267. <g id="node56" class="node"><title>t20</title>
    268. 

  268. <polygon style="fill:#90ee90;stroke:green;" points="884,-748 730,-748 726,-744 726,-712 880,-712 884,-716 884,-748"/>
    269. 

  269. <polyline style="fill:none;stroke:green;" points="880,-744 726,-744 "/>
    270. 

  270. <polyline style="fill:none;stroke:green;" points="880,-744 880,-712 "/>
    271. 

  271. <polyline style="fill:none;stroke:green;" points="880,-744 884,-748 "/>
    272. 

  272. <text text-anchor="middle" x="805" y="-723.5" style="font-family:Times New Roman;font-size:20.00;">bowtie_run_multi</text>
    273. 

  273. </g>
    274. 

  274. <!-- t18&#45;&gt;t20 -->
    275. 

  275. <g id="edge53" class="edge"><title>t18&#45;&gt;t20</title>
    276. 

  276. <path style="fill:none;stroke:gray;" d="M692,-898C701,-879 717,-852 737,-836 758,-818 778,-835 795,-814 807,-798 809,-776 809,-758"/>
    277. 

  277. <polygon style="fill:gray;stroke:gray;" points="812.478,-757.602 808,-748 805.512,-758.299 812.478,-757.602"/>
    278. 

  278. </g>
    279. 

  279. <!-- t19 -->
    280. 

  280. <g id="node58" class="node"><title>t19</title>
    281. 

  281. <polygon style="fill:#90ee90;stroke:green;" points="924,-872 750,-872 746,-868 746,-836 920,-836 924,-840 924,-872"/>
    282. 

  282. <polyline style="fill:none;stroke:green;" points="920,-868 746,-868 "/>
    283. 

  283. <polyline style="fill:none;stroke:green;" points="920,-868 920,-836 "/>
    284. 

  284. <polyline style="fill:none;stroke:green;" points="920,-868 924,-872 "/>
    285. 

  285. <text text-anchor="middle" x="835" y="-847.5" style="font-family:Times New Roman;font-size:20.00;">bowtie_run_uniques</text>
    286. 

  286. </g>
    287. 

  287. <!-- t18&#45;&gt;t19 -->
    288. 

  288. <g id="edge55" class="edge"><title>t18&#45;&gt;t19</title>
    289. 

  289. <path style="fill:none;stroke:gray;" d="M733,-898C749,-891 767,-883 783,-876"/>
    290. 

  290. <polygon style="fill:gray;stroke:gray;" points="785.015,-878.964 793,-872 782.415,-872.464 785.015,-878.964"/>
    291. 

  291. </g>
    292. 

  292. <!-- t25 -->
    293. 

  293. <g id="node30" class="node"><title>t25</title>
    294. 

  294. <polygon style="fill:#90ee90;stroke:green;" points="454.138,-736.774 333,-751.92 211.862,-736.774 211.975,-712.266 454.025,-712.266 454.138,-736.774"/>
    295. 

  295. <polygon style="fill:none;stroke:green;" points="458.138,-740.304 333,-755.951 207.862,-740.304 208.01,-708.266 457.99,-708.266 458.138,-740.304"/>
    296. 

  296. <text text-anchor="middle" x="333" y="-723.5" style="font-family:Times New Roman;font-size:20.00;">FiltoutDualRepeats</text>
    297. 

  297. </g>
    298. 

  298. <!-- t21&#45;&gt;t25 -->
    299. 

  299. <g id="edge93" class="edge"><title>t21&#45;&gt;t25</title>
    300. 

  300. <path style="fill:none;stroke:gray;" d="M196,-778C218,-770 245,-761 268,-752"/>
    301. 

  301. <polygon style="fill:gray;stroke:gray;" points="269.427,-755.226 278,-749 267.416,-748.521 269.427,-755.226"/>
    302. 

  302. </g>
    303. 

  303. <!-- t21&#45;&gt;t46 -->
    304. 

  304. <g id="edge121" class="edge"><title>t21&#45;&gt;t46</title>
    305. 

  305. <path style="fill:none;stroke:gray;" d="M91,-778C80,-772 70,-765 62,-756 34,-720 37,-701 37,-656 37,-656 37,-656 37,-216 37,-192 43,-176 125,-140 155,-126 236,-115 299,-108"/>
    306. 

  306. <polygon style="fill:gray;stroke:gray;" points="299.398,-111.478 309,-107 298.701,-104.512 299.398,-111.478"/>
    307. 

  307. </g>
    308. 

  308. <!-- t24 -->
    309. 

  309. <g id="node29" class="node"><title>t24</title>
    310. 

  310. <polygon style="fill:#90ee90;stroke:green;" points="398,-814 276,-814 272,-810 272,-778 394,-778 398,-782 398,-814"/>
    311. 

  311. <polyline style="fill:none;stroke:green;" points="394,-810 272,-810 "/>
    312. 

  312. <polyline style="fill:none;stroke:green;" points="394,-810 394,-778 "/>
    313. 

  313. <polyline style="fill:none;stroke:green;" points="394,-810 398,-814 "/>
    314. 

  314. <text text-anchor="middle" x="335" y="-789.5" style="font-family:Times New Roman;font-size:20.00;">make_replists</text>
    315. 

  315. </g>
    316. 

  316. <!-- t24&#45;&gt;t25 -->
    317. 

  317. <g id="edge27" class="edge"><title>t24&#45;&gt;t25</title>
    318. 

  318. <path style="fill:none;stroke:gray;" d="M334,-778C334,-774 334,-770 334,-766"/>
    319. 

  319. <polygon style="fill:gray;stroke:gray;" points="337.5,-766 334,-756 330.5,-766 337.5,-766"/>
    320. 

  320. </g>
    321. 

  321. <!-- t26 -->
    322. 

  322. <g id="node32" class="node"><title>t26</title>
    323. 

  323. <polygon style="fill:#90ee90;stroke:green;" points="308.068,-662.774 194,-677.92 79.932,-662.774 80.0385,-638.266 307.961,-638.266 308.068,-662.774"/>
    324. 

  324. <polygon style="fill:none;stroke:green;" points="312.066,-666.278 194,-681.955 75.9337,-666.278 76.0727,-634.266 311.927,-634.266 312.066,-666.278"/>
    325. 

  325. <text text-anchor="middle" x="194" y="-649.5" style="font-family:Times New Roman;font-size:20.00;">prepare_raw_files</text>
    326. 

  326. </g>
    327. 

  327. <!-- t25&#45;&gt;t26 -->
    328. 

  328. <g id="edge29" class="edge"><title>t25&#45;&gt;t26</title>
    329. 

  329. <path style="fill:none;stroke:gray;" d="M292,-708C277,-700 259,-691 243,-682"/>
    330. 

  330. <polygon style="fill:gray;stroke:gray;" points="244.441,-678.797 234,-677 241.042,-684.916 244.441,-678.797"/>
    331. 

  331. </g>
    332. 

  332. <!-- t34 -->
    333. 

  333. <g id="node64" class="node"><title>t34</title>
    334. 

  334. <polygon style="fill:#90ee90;stroke:green;" points="665,-674 565,-674 561,-670 561,-638 661,-638 665,-642 665,-674"/>
    335. 

  335. <polyline style="fill:none;stroke:green;" points="661,-670 561,-670 "/>
    336. 

  336. <polyline style="fill:none;stroke:green;" points="661,-670 661,-638 "/>
    337. 

  337. <polyline style="fill:none;stroke:green;" points="661,-670 665,-674 "/>
    338. 

  338. <text text-anchor="middle" x="613" y="-649.5" style="font-family:Times New Roman;font-size:20.00;">fill_islands</text>
    339. 

  339. </g>
    340. 

  340. <!-- t25&#45;&gt;t34 -->
    341. 

  341. <g id="edge61" class="edge"><title>t25&#45;&gt;t34</title>
    342. 

  342. <path style="fill:none;stroke:gray;" d="M415,-708C458,-696 511,-682 551,-672"/>
    343. 

  343. <polygon style="fill:gray;stroke:gray;" points="551.881,-675.393 561,-670 550.508,-668.529 551.881,-675.393"/>
    344. 

  344. </g>
    345. 

  345. <!-- t37 -->
    346. 

  346. <g id="node70" class="node"><title>t37</title>
    347. 

  347. <polygon style="fill:#90ee90;stroke:green;" points="794,-484 582,-484 578,-480 578,-448 790,-448 794,-452 794,-484"/>
    348. 

  348. <polyline style="fill:none;stroke:green;" points="790,-480 578,-480 "/>
    349. 

  349. <polyline style="fill:none;stroke:green;" points="790,-480 790,-448 "/>
    350. 

  350. <polyline style="fill:none;stroke:green;" points="790,-480 794,-484 "/>
    351. 

  351. <text text-anchor="middle" x="686" y="-459.5" style="font-family:Times New Roman;font-size:20.00;">Reallocate_Repeat_Ends</text>
    352. 

  352. </g>
    353. 

  353. <!-- t25&#45;&gt;t37 -->
    354. 

  354. <g id="edge107" class="edge"><title>t25&#45;&gt;t37</title>
    355. 

  355. <path style="fill:none;stroke:gray;" d="M353,-708C393,-666 486,-573 577,-514 592,-504 610,-495 626,-488"/>
    356. 

  356. <polygon style="fill:gray;stroke:gray;" points="628.015,-490.964 636,-484 625.415,-484.464 628.015,-490.964"/>
    357. 

  357. </g>
    358. 

  358. <!-- t25&#45;&gt;t46 -->
    359. 

  359. <g id="edge119" class="edge"><title>t25&#45;&gt;t46</title>
    360. 

  360. <path style="fill:none;stroke:gray;" d="M331,-708C326,-643 311,-446 311,-282 311,-282 311,-282 311,-216 311,-181 334,-147 354,-125"/>
    361. 

  361. <polygon style="fill:gray;stroke:gray;" points="356.404,-127.546 361,-118 351.454,-122.596 356.404,-127.546"/>
    362. 

  362. </g>
    363. 

  363. <!-- t27 -->
    364. 

  364. <g id="node34" class="node"><title>t27</title>
    365. 

  365. <polygon style="fill:#90ee90;stroke:green;" points="247,-608 135,-608 131,-604 131,-572 243,-572 247,-576 247,-608"/>
    366. 

  366. <polyline style="fill:none;stroke:green;" points="243,-604 131,-604 "/>
    367. 

  367. <polyline style="fill:none;stroke:green;" points="243,-604 243,-572 "/>
    368. 

  368. <polyline style="fill:none;stroke:green;" points="243,-604 247,-608 "/>
    369. 

  369. <text text-anchor="middle" x="189" y="-583.5" style="font-family:Times New Roman;font-size:20.00;">bowtie_run2</text>
    370. 

  370. </g>
    371. 

  371. <!-- t26&#45;&gt;t27 -->
    372. 

  372. <g id="edge31" class="edge"><title>t26&#45;&gt;t27</title>
    373. 

  373. <path style="fill:none;stroke:gray;" d="M192,-634C192,-629 192,-624 191,-618"/>
    374. 

  374. <polygon style="fill:gray;stroke:gray;" points="194.478,-617.602 190,-608 187.512,-618.299 194.478,-617.602"/>
    375. 

  375. </g>
    376. 

  376. <!-- t28 -->
    377. 

  377. <g id="node36" class="node"><title>t28</title>
    378. 

  378. <polygon style="fill:#90ee90;stroke:green;" points="244,-550 134,-550 130,-546 130,-514 240,-514 244,-518 244,-550"/>
    379. 

  379. <polyline style="fill:none;stroke:green;" points="240,-546 130,-546 "/>
    380. 

  380. <polyline style="fill:none;stroke:green;" points="240,-546 240,-514 "/>
    381. 

  381. <polyline style="fill:none;stroke:green;" points="240,-546 244,-550 "/>
    382. 

  382. <text text-anchor="middle" x="187" y="-525.5" style="font-family:Times New Roman;font-size:20.00;">SAM2BAM</text>
    383. 

  383. </g>
    384. 

  384. <!-- t27&#45;&gt;t28 -->
    385. 

  385. <g id="edge33" class="edge"><title>t27&#45;&gt;t28</title>
    386. 

  386. <path style="fill:none;stroke:gray;" d="M188,-572C188,-568 188,-564 188,-560"/>
    387. 

  387. <polygon style="fill:gray;stroke:gray;" points="191.5,-560 188,-550 184.5,-560 191.5,-560"/>
    388. 

  388. </g>
    389. 

  389. <!-- t29 -->
    390. 

  390. <g id="node38" class="node"><title>t29</title>
    391. 

  391. <polygon style="fill:#90ee90;stroke:green;" points="259.953,-472.774 185,-487.92 110.047,-472.774 110.117,-448.266 259.883,-448.266 259.953,-472.774"/>
    392. 

  392. <polygon style="fill:none;stroke:green;" points="263.963,-476.044 185,-492.001 106.037,-476.044 106.128,-444.266 263.872,-444.266 263.963,-476.044"/>
    393. 

  393. <text text-anchor="middle" x="185" y="-459.5" style="font-family:Times New Roman;font-size:20.00;">splitby_chr</text>
    394. 

  394. </g>
    395. 

  395. <!-- t28&#45;&gt;t29 -->
    396. 

  396. <g id="edge35" class="edge"><title>t28&#45;&gt;t29</title>
    397. 

  397. <path style="fill:none;stroke:gray;" d="M186,-514C186,-510 186,-506 186,-502"/>
    398. 

  398. <polygon style="fill:gray;stroke:gray;" points="189.5,-502 186,-492 182.5,-502 189.5,-502"/>
    399. 

  399. </g>
    400. 

  400. <!-- t30 -->
    401. 

  401. <g id="node40" class="node"><title>t30</title>
    402. 

  402. <polygon style="fill:#90ee90;stroke:green;" points="292,-392 80,-392 76,-388 76,-356 288,-356 292,-360 292,-392"/>
    403. 

  403. <polyline style="fill:none;stroke:green;" points="288,-388 76,-388 "/>
    404. 

  404. <polyline style="fill:none;stroke:green;" points="288,-388 288,-356 "/>
    405. 

  405. <polyline style="fill:none;stroke:green;" points="288,-388 292,-392 "/>
    406. 

  406. <text text-anchor="middle" x="184" y="-367.5" style="font-family:Times New Roman;font-size:20.00;">create_by_chr_raw_files</text>
    407. 

  407. </g>
    408. 

  408. <!-- t29&#45;&gt;t30 -->
    409. 

  409. <g id="edge37" class="edge"><title>t29&#45;&gt;t30</title>
    410. 

  410. <path style="fill:none;stroke:gray;" d="M185,-444C184,-431 184,-416 184,-402"/>
    411. 

  411. <polygon style="fill:gray;stroke:gray;" points="187.5,-402 184,-392 180.5,-402 187.5,-402"/>
    412. 

  412. </g>
    413. 

  413. <!-- t31 -->
    414. 

  414. <g id="node42" class="node"><title>t31</title>
    415. 

  415. <polygon style="fill:#90ee90;stroke:green;" points="270,-300 102,-300 98,-296 98,-264 266,-264 270,-268 270,-300"/>
    416. 

  416. <polyline style="fill:none;stroke:green;" points="266,-296 98,-296 "/>
    417. 

  417. <polyline style="fill:none;stroke:green;" points="266,-296 266,-264 "/>
    418. 

  418. <polyline style="fill:none;stroke:green;" points="266,-296 270,-300 "/>
    419. 

  419. <text text-anchor="middle" x="184" y="-275.5" style="font-family:Times New Roman;font-size:20.00;">run_by_chr_bowtie</text>
    420. 

  420. </g>
    421. 

  421. <!-- t30&#45;&gt;t31 -->
    422. 

  422. <g id="edge39" class="edge"><title>t30&#45;&gt;t31</title>
    423. 

  423. <path style="fill:none;stroke:gray;" d="M184,-356C184,-343 184,-325 184,-310"/>
    424. 

  424. <polygon style="fill:gray;stroke:gray;" points="187.5,-310 184,-300 180.5,-310 187.5,-310"/>
    425. 

  425. </g>
    426. 

  426. <!-- t32 -->
    427. 

  427. <g id="node44" class="node"><title>t32</title>
    428. 

  428. <polygon style="fill:#90ee90;stroke:green;" points="287,-234 85,-234 81,-230 81,-198 283,-198 287,-202 287,-234"/>
    429. 

  429. <polyline style="fill:none;stroke:green;" points="283,-230 81,-230 "/>
    430. 

  430. <polyline style="fill:none;stroke:green;" points="283,-230 283,-198 "/>
    431. 

  431. <polyline style="fill:none;stroke:green;" points="283,-230 287,-234 "/>
    432. 

  432. <text text-anchor="middle" x="184" y="-209.5" style="font-family:Times New Roman;font-size:20.00;">by_chr_SAM_to_BAM</text>
    433. 

  433. </g>
    434. 

  434. <!-- t31&#45;&gt;t32 -->
    435. 

  435. <g id="edge41" class="edge"><title>t31&#45;&gt;t32</title>
    436. 

  436. <path style="fill:none;stroke:gray;" d="M184,-264C184,-258 184,-251 184,-244"/>
    437. 

  437. <polygon style="fill:gray;stroke:gray;" points="187.5,-244 184,-234 180.5,-244 187.5,-244"/>
    438. 

  438. </g>
    439. 

  439. <!-- t33 -->
    440. 

  440. <g id="node48" class="node"><title>t33</title>
    441. 

  441. <polygon style="fill:#90ee90;stroke:green;" points="234,-176 138,-176 134,-172 134,-140 230,-140 234,-144 234,-176"/>
    442. 

  442. <polyline style="fill:none;stroke:green;" points="230,-172 134,-172 "/>
    443. 

  443. <polyline style="fill:none;stroke:green;" points="230,-172 230,-140 "/>
    444. 

  444. <polyline style="fill:none;stroke:green;" points="230,-172 234,-176 "/>
    445. 

  445. <text text-anchor="middle" x="184" y="-151.5" style="font-family:Times New Roman;font-size:20.00;">ccheckhits</text>
    446. 

  446. </g>
    447. 

  447. <!-- t32&#45;&gt;t33 -->
    448. 

  448. <g id="edge45" class="edge"><title>t32&#45;&gt;t33</title>
    449. 

  449. <path style="fill:none;stroke:gray;" d="M184,-198C184,-194 184,-190 184,-186"/>
    450. 

  450. <polygon style="fill:gray;stroke:gray;" points="187.5,-186 184,-176 180.5,-186 187.5,-186"/>
    451. 

  451. </g>
    452. 

  452. <!-- t2&#45;&gt;t33 -->
    453. 

  453. <g id="edge95" class="edge"><title>t2&#45;&gt;t33</title>
    454. 

  454. <path style="fill:none;stroke:gray;" d="M416,-779C413,-779 410,-778 407,-778 244,-755 57,-820 57,-656 57,-656 57,-656 57,-282 57,-244 48,-226 72,-198 80,-189 102,-181 124,-173"/>
    455. 

  455. <polygon style="fill:gray;stroke:gray;" points="125.427,-176.226 134,-170 123.416,-169.521 125.427,-176.226"/>
    456. 

  456. </g>
    457. 

  457. <!-- t23 -->
    458. 

  458. <g id="node62" class="node"><title>t23</title>
    459. 

  459. <polygon style="fill:#90ee90;stroke:green;" points="697,-748 533,-748 529,-744 529,-712 693,-712 697,-716 697,-748"/>
    460. 

  460. <polyline style="fill:none;stroke:green;" points="693,-744 529,-744 "/>
    461. 

  461. <polyline style="fill:none;stroke:green;" points="693,-744 693,-712 "/>
    462. 

  462. <polyline style="fill:none;stroke:green;" points="693,-744 697,-748 "/>
    463. 

  463. <text text-anchor="middle" x="613" y="-723.5" style="font-family:Times New Roman;font-size:20.00;">create_island_seed</text>
    464. 

  464. </g>
    465. 

  465. <!-- t2&#45;&gt;t23 -->
    466. 

  466. <g id="edge99" class="edge"><title>t2&#45;&gt;t23</title>
    467. 

  467. <path style="fill:none;stroke:gray;" d="M540,-778C551,-771 564,-762 576,-754"/>
    468. 

  468. <polygon style="fill:gray;stroke:gray;" points="578.621,-756.459 585,-748 574.738,-750.635 578.621,-756.459"/>
    469. 

  469. </g>
    470. 

  470. <!-- t38 -->
    471. 

  471. <g id="node76" class="node"><title>t38</title>
    472. 

  472. <polygon style="fill:#90ee90;stroke:green;" points="333.879,-361.794 485,-334.5 636.121,-361.794 635.98,-405.956 334.02,-405.956 333.879,-361.794"/>
    473. 

  473. <polygon style="fill:none;stroke:green;" points="329.868,-358.453 485,-330.435 640.132,-358.453 639.967,-409.956 330.033,-409.956 329.868,-358.453"/>
    474. 

  474. <text text-anchor="middle" x="485" y="-367.5" style="font-family:Times New Roman;font-size:20.00;">make_karyotype_file_for_circos</text>
    475. 

  475. </g>
    476. 

  476. <!-- t2&#45;&gt;t38 -->
    477. 

  477. <g id="edge113" class="edge"><title>t2&#45;&gt;t38</title>
    478. 

  478. <path style="fill:none;stroke:gray;" d="M512,-778C507,-716 494,-513 488,-420"/>
    479. 

  479. <polygon style="fill:gray;stroke:gray;" points="491.478,-419.602 487,-410 484.512,-420.299 491.478,-419.602"/>
    480. 

  480. </g>
    481. 

  481. <!-- t33&#45;&gt;t46 -->
    482. 

  482. <g id="edge117" class="edge"><title>t33&#45;&gt;t46</title>
    483. 

  483. <path style="fill:none;stroke:gray;" d="M234,-143C257,-136 285,-128 309,-121"/>
    484. 

  484. <polygon style="fill:gray;stroke:gray;" points="310.427,-124.226 319,-118 308.416,-117.521 310.427,-124.226"/>
    485. 

  485. </g>
    486. 

  486. <!-- t44 -->
    487. 

  487. <g id="node52" class="node"><title>t44</title>
    488. 

  488. <polygon style="fill:#90ee90;stroke:green;" points="147,-1368 49,-1368 45,-1364 45,-1332 143,-1332 147,-1336 147,-1368"/>
    489. 

  489. <polyline style="fill:none;stroke:green;" points="143,-1364 45,-1364 "/>
    490. 

  490. <polyline style="fill:none;stroke:green;" points="143,-1364 143,-1332 "/>
    491. 

  491. <polyline style="fill:none;stroke:green;" points="143,-1364 147,-1368 "/>
    492. 

  492. <text text-anchor="middle" x="96" y="-1343.5" style="font-family:Times New Roman;font-size:20.00;">velvet_run</text>
    493. 

  493. </g>
    494. 

  494. <!-- t43&#45;&gt;t44 -->
    495. 

  495. <g id="edge49" class="edge"><title>t43&#45;&gt;t44</title>
    496. 

  496. <path style="fill:none;stroke:gray;" d="M116,-1390C114,-1386 111,-1382 109,-1377"/>
    497. 

  497. <polygon style="fill:gray;stroke:gray;" points="112.26,-1375.72 105,-1368 105.863,-1378.56 112.26,-1375.72"/>
    498. 

  498. </g>
    499. 

  499. <!-- t45 -->
    500. 

  500. <g id="node54" class="node"><title>t45</title>
    501. 

  501. <polygon style="fill:#90ee90;stroke:green;" points="112,-1178 20,-1178 16,-1174 16,-1142 108,-1142 112,-1146 112,-1178"/>
    502. 

  502. <polyline style="fill:none;stroke:green;" points="108,-1174 16,-1174 "/>
    503. 

  503. <polyline style="fill:none;stroke:green;" points="108,-1174 108,-1142 "/>
    504. 

  504. <polyline style="fill:none;stroke:green;" points="108,-1174 112,-1178 "/>
    505. 

  505. <text text-anchor="middle" x="64" y="-1153.5" style="font-family:Times New Roman;font-size:20.00;">oases_run</text>
    506. 

  506. </g>
    507. 

  507. <!-- t44&#45;&gt;t45 -->
    508. 

  508. <g id="edge51" class="edge"><title>t44&#45;&gt;t45</title>
    509. 

  509. <path style="fill:none;stroke:gray;" d="M93,-1332C88,-1298 75,-1227 69,-1188"/>
    510. 

  510. <polygon style="fill:gray;stroke:gray;" points="72.3933,-1187.12 67,-1178 65.5292,-1188.49 72.3933,-1187.12"/>
    511. 

  511. </g>
    512. 

  512. <!-- t45&#45;&gt;t46 -->
    513. 

  513. <g id="edge79" class="edge"><title>t45&#45;&gt;t46</title>
    514. 

  514. <path style="fill:none;stroke:gray;" d="M52,-1142C38,-1120 17,-1081 17,-1044 17,-1044 17,-1044 17,-216 17,-178 24,-161 54,-140 74,-126 208,-113 299,-106"/>
    515. 

  515. <polygon style="fill:gray;stroke:gray;" points="299.398,-109.478 309,-105 298.701,-102.512 299.398,-109.478"/>
    516. 

  516. </g>
    517. 

  517. <!-- t20&#45;&gt;t34 -->
    518. 

  518. <g id="edge103" class="edge"><title>t20&#45;&gt;t34</title>
    519. 

  519. <path style="fill:none;stroke:gray;" d="M758,-712C731,-701 698,-689 669,-678"/>
    520. 

  520. <polygon style="fill:gray;stroke:gray;" points="670.56,-674.863 660,-674 667.717,-681.26 670.56,-674.863"/>
    521. 

  521. </g>
    522. 

  522. <!-- t20&#45;&gt;t46 -->
    523. 

  523. <g id="edge123" class="edge"><title>t20&#45;&gt;t46</title>
    524. 

  524. <path style="fill:none;stroke:gray;" d="M829,-712C858,-687 903,-641 903,-590 903,-590 903,-590 903,-216 903,-171 608,-128 461,-109"/>
    525. 

  525. <polygon style="fill:gray;stroke:gray;" points="461.299,-105.512 451,-108 460.602,-112.478 461.299,-105.512"/>
    526. 

  526. </g>
    527. 

  527. <!-- t19&#45;&gt;t22 -->
    528. 

  528. <g id="edge57" class="edge"><title>t19&#45;&gt;t22</title>
    529. 

  529. <path style="fill:none;stroke:gray;" d="M795,-836C783,-830 769,-824 756,-818"/>
    530. 

  530. <polygon style="fill:gray;stroke:gray;" points="757.56,-814.863 747,-814 754.717,-821.26 757.56,-814.863"/>
    531. 

  531. </g>
    532. 

  532. <!-- t19&#45;&gt;t46 -->
    533. 

  533. <g id="edge125" class="edge"><title>t19&#45;&gt;t46</title>
    534. 

  534. <path style="fill:none;stroke:gray;" d="M859,-836C885,-814 923,-774 923,-730 923,-730 923,-730 923,-216 923,-158 995,-197 760,-140 706,-126 556,-113 461,-106"/>
    535. 

  535. <polygon style="fill:gray;stroke:gray;" points="461.299,-102.512 451,-105 460.602,-109.478 461.299,-102.512"/>
    536. 

  536. </g>
    537. 

  537. <!-- t22&#45;&gt;t23 -->
    538. 

  538. <g id="edge59" class="edge"><title>t22&#45;&gt;t23</title>
    539. 

  539. <path style="fill:none;stroke:gray;" d="M681,-778C671,-771 658,-762 647,-754"/>
    540. 

  540. <polygon style="fill:gray;stroke:gray;" points="649.1,-751.2 639,-748 644.9,-756.8 649.1,-751.2"/>
    541. 

  541. </g>
    542. 

  542. <!-- t23&#45;&gt;t34 -->
    543. 

  543. <g id="edge101" class="edge"><title>t23&#45;&gt;t34</title>
    544. 

  544. <path style="fill:none;stroke:gray;" d="M613,-712C613,-703 613,-694 613,-684"/>
    545. 

  545. <polygon style="fill:gray;stroke:gray;" points="616.5,-684 613,-674 609.5,-684 616.5,-684"/>
    546. 

  546. </g>
    547. 

  547. <!-- t35 -->
    548. 

  548. <g id="node66" class="node"><title>t35</title>
    549. 

  549. <polygon style="fill:#90ee90;stroke:green;" points="864,-608 602,-608 598,-604 598,-572 860,-572 864,-576 864,-608"/>
    550. 

  550. <polyline style="fill:none;stroke:green;" points="860,-604 598,-604 "/>
    551. 

  551. <polyline style="fill:none;stroke:green;" points="860,-604 860,-572 "/>
    552. 

  552. <polyline style="fill:none;stroke:green;" points="860,-604 864,-608 "/>
    553. 

  553. <text text-anchor="middle" x="731" y="-583.5" style="font-family:Times New Roman;font-size:20.00;">make_fasta_for_RepeatMasker</text>
    554. 

  554. </g>
    555. 

  555. <!-- t34&#45;&gt;t35 -->
    556. 

  556. <g id="edge63" class="edge"><title>t34&#45;&gt;t35</title>
    557. 

  557. <path style="fill:none;stroke:gray;" d="M645,-638C659,-631 675,-621 689,-613"/>
    558. 

  558. <polygon style="fill:gray;stroke:gray;" points="690.958,-615.916 698,-608 687.559,-609.797 690.958,-615.916"/>
    559. 

  559. </g>
    560. 

  560. <!-- t34&#45;&gt;t37 -->
    561. 

  561. <g id="edge105" class="edge"><title>t34&#45;&gt;t37</title>
    562. 

  562. <path style="fill:none;stroke:gray;" d="M602,-638C597,-629 592,-618 589,-608 580,-567 571,-548 593,-514 600,-504 610,-496 620,-489"/>
    563. 

  563. <polygon style="fill:gray;stroke:gray;" points="621.958,-491.916 629,-484 618.559,-485.797 621.958,-491.916"/>
    564. 

  564. </g>
    565. 

  565. <!-- t39 -->
    566. 

  566. <g id="node72" class="node"><title>t39</title>
    567. 

  567. <polygon style="fill:none;stroke:blue;" points="884,-392 682,-392 678,-388 678,-356 880,-356 884,-360 884,-392"/>
    568. 

  568. <polyline style="fill:none;stroke:blue;" points="880,-388 678,-388 "/>
    569. 

  569. <polyline style="fill:none;stroke:blue;" points="880,-388 880,-356 "/>
    570. 

  570. <polyline style="fill:none;stroke:blue;" points="880,-388 884,-392 "/>
    571. 

  571. <text text-anchor="middle" x="781" y="-367.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">remove_simple_repeats</text>
    572. 

  572. </g>
    573. 

  573. <!-- t34&#45;&gt;t39 -->
    574. 

  574. <g id="edge109" class="edge"><title>t34&#45;&gt;t39</title>
    575. 

  575. <path style="fill:none;stroke:gray;" d="M665,-654C733,-650 847,-639 873,-608 926,-544 849,-445 806,-399"/>
    576. 

  576. <polygon style="fill:gray;stroke:gray;" points="808.546,-396.596 799,-392 803.596,-401.546 808.546,-396.596"/>
    577. 

  577. </g>
    578. 

  578. <!-- t40 -->
    579. 

  579. <g id="node74" class="node"><title>t40</title>
    580. 

  580. <polygon style="fill:none;stroke:blue;" points="750.217,-288.774 659,-303.92 567.783,-288.774 567.868,-264.266 750.132,-264.266 750.217,-288.774"/>
    581. 

  581. <polygon style="fill:none;stroke:blue;" points="754.229,-292.162 659,-307.975 563.771,-292.162 563.882,-260.266 754.118,-260.266 754.229,-292.162"/>
    582. 

  582. <text text-anchor="middle" x="659" y="-275.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">report_islands</text>
    583. 

  583. </g>
    584. 

  584. <!-- t34&#45;&gt;t40 -->
    585. 

  585. <g id="edge111" class="edge"><title>t34&#45;&gt;t40</title>
    586. 

  586. <path style="fill:none;stroke:gray;" d="M597,-638C590,-629 583,-619 579,-608 554,-537 524,-499 569,-440 592,-410 626,-446 649,-418 662,-403 662,-353 661,-318"/>
    587. 

  587. <polygon style="fill:gray;stroke:gray;" points="664.5,-318 661,-308 657.5,-318 664.5,-318"/>
    588. 

  588. </g>
    589. 

  589. <!-- t36 -->
    590. 

  590. <g id="node68" class="node"><title>t36</title>
    591. 

  591. <polygon style="fill:#90ee90;stroke:green;" points="852,-550 606,-550 602,-546 602,-514 848,-514 852,-518 852,-550"/>
    592. 

  592. <polyline style="fill:none;stroke:green;" points="848,-546 602,-546 "/>
    593. 

  593. <polyline style="fill:none;stroke:green;" points="848,-546 848,-514 "/>
    594. 

  594. <polyline style="fill:none;stroke:green;" points="848,-546 852,-550 "/>
    595. 

  595. <text text-anchor="middle" x="727" y="-525.5" style="font-family:Times New Roman;font-size:20.00;">run_RepeatMasker_on_reads</text>
    596. 

  596. </g>
    597. 

  597. <!-- t35&#45;&gt;t36 -->
    598. 

  598. <g id="edge65" class="edge"><title>t35&#45;&gt;t36</title>
    599. 

  599. <path style="fill:none;stroke:gray;" d="M730,-572C730,-568 730,-564 729,-560"/>
    600. 

  600. <polygon style="fill:gray;stroke:gray;" points="732.478,-559.602 728,-550 725.512,-560.299 732.478,-559.602"/>
    601. 

  601. </g>
    602. 

  602. <!-- t36&#45;&gt;t37 -->
    603. 

  603. <g id="edge67" class="edge"><title>t36&#45;&gt;t37</title>
    604. 

  604. <path style="fill:none;stroke:gray;" d="M716,-514C712,-508 707,-500 703,-493"/>
    605. 

  605. <polygon style="fill:gray;stroke:gray;" points="705.916,-491.042 698,-484 699.797,-494.441 705.916,-491.042"/>
    606. 

  606. </g>
    607. 

  607. <!-- t37&#45;&gt;t39 -->
    608. 

  608. <g id="edge69" class="edge"><title>t37&#45;&gt;t39</title>
    609. 

  609. <path style="fill:none;stroke:gray;" d="M705,-448C719,-434 738,-415 754,-399"/>
    610. 

  610. <polygon style="fill:gray;stroke:gray;" points="756.779,-401.219 762,-392 752.169,-395.951 756.779,-401.219"/>
    611. 

  611. </g>
    612. 

  612. <!-- t37&#45;&gt;t38 -->
    613. 

  613. <g id="edge73" class="edge"><title>t37&#45;&gt;t38</title>
    614. 

  614. <path style="fill:none;stroke:gray;" d="M646,-448C626,-438 599,-426 573,-414"/>
    615. 

  615. <polygon style="fill:gray;stroke:gray;" points="574.56,-410.863 564,-410 571.717,-417.26 574.56,-410.863"/>
    616. 

  616. </g>
    617. 

  617. <!-- t39&#45;&gt;t40 -->
    618. 

  618. <g id="edge71" class="edge"><title>t39&#45;&gt;t40</title>
    619. 

  619. <path style="fill:none;stroke:blue;" d="M757,-356C739,-343 715,-324 695,-309"/>
    620. 

  620. <polygon style="fill:blue;stroke:blue;" points="697.1,-306.2 687,-303 692.9,-311.8 697.1,-306.2"/>
    621. 

  621. </g>
    622. 

  622. <!-- t41 -->
    623. 

  623. <g id="node78" class="node"><title>t41</title>
    624. 

  624. <polygon style="fill:none;stroke:blue;" points="585,-234 389,-234 385,-230 385,-198 581,-198 585,-202 585,-234"/>
    625. 

  625. <polyline style="fill:none;stroke:blue;" points="581,-230 385,-230 "/>
    626. 

  626. <polyline style="fill:none;stroke:blue;" points="581,-230 581,-198 "/>
    627. 

  627. <polyline style="fill:none;stroke:blue;" points="581,-230 585,-234 "/>
    628. 

  628. <text text-anchor="middle" x="485" y="-209.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">make_circos_conf_file</text>
    629. 

  629. </g>
    630. 

  630. <!-- t40&#45;&gt;t41 -->
    631. 

  631. <g id="edge75" class="edge"><title>t40&#45;&gt;t41</title>
    632. 

  632. <path style="fill:none;stroke:blue;" d="M602,-260C583,-253 561,-245 542,-238"/>
    633. 

  633. <polygon style="fill:blue;stroke:blue;" points="543.56,-234.863 533,-234 540.717,-241.26 543.56,-234.863"/>
    634. 

  634. </g>
    635. 

  635. <!-- t38&#45;&gt;t41 -->
    636. 

  636. <g id="edge115" class="edge"><title>t38&#45;&gt;t41</title>
    637. 

  637. <path style="fill:none;stroke:gray;" d="M485,-330C485,-303 485,-268 485,-244"/>
    638. 

  638. <polygon style="fill:gray;stroke:gray;" points="488.5,-244 485,-234 481.5,-244 488.5,-244"/>
    639. 

  639. </g>
    640. 

  640. <!-- t42 -->
    641. 

  641. <g id="node80" class="node"><title>t42</title>
    642. 

  642. <polygon style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="531,-176 371,-176 367,-172 367,-140 527,-140 531,-144 531,-176"/>
    643. 

  643. <polyline style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="527,-172 367,-172 "/>
    644. 

  644. <polyline style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="527,-172 527,-140 "/>
    645. 

  645. <polyline style="fill:none;stroke:blue;stroke-dasharray:5,2;" points="527,-172 531,-176 "/>
    646. 

  646. <text text-anchor="middle" x="449" y="-151.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">run_circos_islands</text>
    647. 

  647. </g>
    648. 

  648. <!-- t41&#45;&gt;t42 -->
    649. 

  649. <g id="edge77" class="edge"><title>t41&#45;&gt;t42</title>
    650. 

  650. <path style="fill:none;stroke:blue;" d="M474,-198C472,-194 469,-189 466,-185"/>
    651. 

  651. <polygon style="fill:blue;stroke:blue;" points="468.459,-182.379 460,-176 462.635,-186.262 468.459,-182.379"/>
    652. 

  652. </g>
    653. 

  653. <!-- t42&#45;&gt;t46 -->
    654. 

  654. <g id="edge81" class="edge"><title>t42&#45;&gt;t46</title>
    655. 

  655. <path style="fill:none;stroke:blue;" d="M428,-140C422,-135 416,-130 410,-125"/>
    656. 

  656. <polygon style="fill:blue;stroke:blue;" points="411.831,-121.951 402,-118 407.221,-127.219 411.831,-121.951"/>
    657. 

  657. </g>
    658. 

  658. <!-- t47 -->
    659. 

  659. <g id="node85" class="node"><title>t47</title>
    660. 

  660. <polygon style="fill:#fff68f;stroke:black;" points="456,-60 308,-60 304,-56 304,-24 452,-24 456,-28 456,-60"/>
    661. 

  661. <polyline style="fill:none;stroke:black;" points="452,-56 304,-56 "/>
    662. 

  662. <polyline style="fill:none;stroke:black;" points="452,-56 452,-24 "/>
    663. 

  663. <polyline style="fill:none;stroke:black;" points="452,-56 456,-60 "/>
    664. 

  664. <text text-anchor="middle" x="380" y="-35.5" style="font-family:Times New Roman;font-size:20.00;">target_final_task</text>
    665. 

  665. </g>
    666. 

  666. <!-- t46&#45;&gt;t47 -->
    667. 

  667. <g id="edge83" class="edge"><title>t46&#45;&gt;t47</title>
    668. 

  668. <path style="fill:none;stroke:blue;" d="M380,-82C380,-78 380,-74 380,-70"/>
    669. 

  669. <polygon style="fill:blue;stroke:blue;" points="383.5,-70 380,-60 376.5,-70 383.5,-70"/>
    670. 

  670. </g>
    671. 

  671. </g>
    672. 

  672. </svg>
    673.