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/doc/images/gallery/gallery.big_pipeline.svg

https://code.google.com/p/ruffus/
SVG | 969 lines | 814 code | 0 blank | 155 comment | 0 complexity | 47005a598228622a7d0538b23768407f MD5 | raw file

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288<polygon style="fill:gray;stroke:gray;" points="5405.3,-392.512 5395,-395 5404.6,-399.478 5405.3,-392.512"/>
289</g>
290<!-- t139 -->
291<g id="node284" class="node"><title>t139</title>
292<polygon style="fill:none;stroke:blue;" points="6771,-396 6573,-396 6569,-392 6569,-360 6767,-360 6771,-364 6771,-396"/>
293<polyline style="fill:none;stroke:blue;" points="6767,-392 6569,-392 "/>
294<polyline style="fill:none;stroke:blue;" points="6767,-392 6767,-360 "/>
295<polyline style="fill:none;stroke:blue;" points="6767,-392 6771,-396 "/>
296<text text-anchor="middle" x="6670" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorROIGO</text>
297</g>
298<!-- t36&#45;&gt;t139 -->
299<g id="edge277" class="edge"><title>t36&#45;&gt;t139</title>
300<path style="fill:none;stroke:gray;" d="M7355,-455C7233,-445 6995,-424 6781,-396"/>
301<polygon style="fill:gray;stroke:gray;" points="6781.3,-392.512 6771,-395 6780.6,-399.478 6781.3,-392.512"/>
302</g>
303<!-- t138 -->
304<g id="node288" class="node"><title>t138</title>
305<polygon style="fill:none;stroke:blue;" points="6247,-396 6011,-396 6007,-392 6007,-360 6243,-360 6247,-364 6247,-396"/>
306<polyline style="fill:none;stroke:blue;" points="6243,-392 6007,-392 "/>
307<polyline style="fill:none;stroke:blue;" points="6243,-392 6243,-360 "/>
308<polyline style="fill:none;stroke:blue;" points="6243,-392 6247,-396 "/>
309<text text-anchor="middle" x="6127" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorROIGOSlim</text>
310</g>
311<!-- t36&#45;&gt;t138 -->
312<g id="edge281" class="edge"><title>t36&#45;&gt;t138</title>
313<path style="fill:none;stroke:gray;" d="M7355,-460C7165,-454 6676,-436 6257,-396"/>
314<polygon style="fill:gray;stroke:gray;" points="6257.3,-392.512 6247,-395 6256.6,-399.478 6257.3,-392.512"/>
315</g>
316<!-- t141 -->
317<g id="node292" class="node"><title>t141</title>
318<polygon style="fill:none;stroke:blue;" points="7055,-396 6793,-396 6789,-392 6789,-360 7051,-360 7055,-364 7055,-396"/>
319<polyline style="fill:none;stroke:blue;" points="7051,-392 6789,-392 "/>
320<polyline style="fill:none;stroke:blue;" points="7051,-392 7051,-360 "/>
321<polyline style="fill:none;stroke:blue;" points="7051,-392 7055,-396 "/>
322<text text-anchor="middle" x="6922" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorROIOverlapGO</text>
323</g>
324<!-- t36&#45;&gt;t141 -->
325<g id="edge285" class="edge"><title>t36&#45;&gt;t141</title>
326<path style="fill:none;stroke:gray;" d="M7355,-449C7271,-435 7138,-414 7042,-398"/>
327<polygon style="fill:gray;stroke:gray;" points="7042.49,-394.529 7032,-396 7041.12,-401.393 7042.49,-394.529"/>
328</g>
329<!-- t140 -->
330<g id="node296" class="node"><title>t140</title>
331<polygon style="fill:none;stroke:blue;" points="7377,-396 7077,-396 7073,-392 7073,-360 7373,-360 7377,-364 7377,-396"/>
332<polyline style="fill:none;stroke:blue;" points="7373,-392 7073,-392 "/>
333<polyline style="fill:none;stroke:blue;" points="7373,-392 7373,-360 "/>
334<polyline style="fill:none;stroke:blue;" points="7373,-392 7377,-396 "/>
335<text text-anchor="middle" x="7225" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorROIOverlapGOSlim</text>
336</g>
337<!-- t36&#45;&gt;t140 -->
338<g id="edge289" class="edge"><title>t36&#45;&gt;t140</title>
339<path style="fill:none;stroke:gray;" d="M7391,-444C7359,-431 7314,-413 7280,-400"/>
340<polygon style="fill:gray;stroke:gray;" points="7281.56,-396.863 7271,-396 7278.72,-403.26 7281.56,-396.863"/>
341</g>
342<!-- t37 -->
343<g id="node5" class="node"><title>t37</title>
344<polygon style="fill:#90ee90;stroke:green;" points="2618,-480 2498,-480 2494,-476 2494,-444 2614,-444 2618,-448 2618,-480"/>
345<polyline style="fill:none;stroke:green;" points="2614,-476 2494,-476 "/>
346<polyline style="fill:none;stroke:green;" points="2614,-476 2614,-444 "/>
347<polyline style="fill:none;stroke:green;" points="2614,-476 2618,-480 "/>
348<text text-anchor="middle" x="2556" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">buildGeneSet</text>
349</g>
350<!-- t38 -->
351<g id="node27" class="node"><title>t38</title>
352<polygon style="fill:#90ee90;stroke:green;" points="2631,-396 2485,-396 2481,-392 2481,-360 2627,-360 2631,-364 2631,-396"/>
353<polyline style="fill:none;stroke:green;" points="2627,-392 2481,-392 "/>
354<polyline style="fill:none;stroke:green;" points="2627,-392 2627,-360 "/>
355<polyline style="fill:none;stroke:green;" points="2627,-392 2631,-396 "/>
356<text text-anchor="middle" x="2556" y="-371.5" style="font-family:Times New Roman;font-size:20.00;">importGeneStats</text>
357</g>
358<!-- t37&#45;&gt;t38 -->
359<g id="edge15" class="edge"><title>t37&#45;&gt;t38</title>
360<path style="fill:none;stroke:gray;" d="M2556,-444C2556,-433 2556,-419 2556,-406"/>
361<polygon style="fill:gray;stroke:gray;" points="2559.5,-406 2556,-396 2552.5,-406 2559.5,-406"/>
362</g>
363<!-- t37&#45;&gt;t181 -->
364<g id="edge353" class="edge"><title>t37&#45;&gt;t181</title>
365<path style="fill:none;stroke:gray;" d="M2528,-444C2510,-432 2488,-415 2472,-396 2461,-382 2468,-369 2452,-360 2390,-322 1216,-363 1148,-338 1137,-334 1128,-327 1119,-320"/>
366<polygon style="fill:gray;stroke:gray;" points="1121.22,-317.221 1112,-312 1115.95,-321.831 1121.22,-317.221"/>
367</g>
368<!-- t176 -->
369<g id="node188" class="node"><title>t176</title>
370<polygon style="fill:#90ee90;stroke:green;" points="8328,-312 7984,-312 7980,-308 7980,-276 8324,-276 8328,-280 8328,-312"/>
371<polyline style="fill:none;stroke:green;" points="8324,-308 7980,-308 "/>
372<polyline style="fill:none;stroke:green;" points="8324,-308 8324,-276 "/>
373<polyline style="fill:none;stroke:green;" points="8324,-308 8328,-312 "/>
374<text text-anchor="middle" x="8154" y="-287.5" style="font-family:Times New Roman;font-size:20.00;">importOverlapRegionsOfInterestEnsembl</text>
375</g>
376<!-- t37&#45;&gt;t176 -->
377<g id="edge169" class="edge"><title>t37&#45;&gt;t176</title>
378<path style="fill:none;stroke:gray;" d="M2618,-450C2679,-440 2776,-424 2860,-418 2986,-408 7265,-429 7386,-396 7416,-387 7417,-369 7446,-360 7546,-330 7809,-349 7911,-338 7960,-332 8015,-323 8059,-314"/>
379<polygon style="fill:gray;stroke:gray;" points="8059.88,-317.393 8069,-312 8058.51,-310.529 8059.88,-317.393"/>
380</g>
381<!-- t32 -->
382<g id="node6" class="node"><title>t32</title>
383<polygon style="fill:#90ee90;stroke:green;" points="4626,-590 4484,-590 4480,-586 4480,-554 4622,-554 4626,-558 4626,-590"/>
384<polyline style="fill:none;stroke:green;" points="4622,-586 4480,-586 "/>
385<polyline style="fill:none;stroke:green;" points="4622,-586 4622,-554 "/>
386<polyline style="fill:none;stroke:green;" points="4622,-586 4626,-590 "/>
387<text text-anchor="middle" x="4553" y="-565.5" style="font-family:Times New Roman;font-size:20.00;">buildTranscripts</text>
388</g>
389<!-- t40 -->
390<g id="node7" class="node"><title>t40</title>
391<polygon style="fill:#90ee90;stroke:green;" points="4662,-480 4472,-480 4468,-476 4468,-444 4658,-444 4662,-448 4662,-480"/>
392<polyline style="fill:none;stroke:green;" points="4658,-476 4468,-476 "/>
393<polyline style="fill:none;stroke:green;" points="4658,-476 4658,-444 "/>
394<polyline style="fill:none;stroke:green;" points="4658,-476 4662,-480 "/>
395<text text-anchor="middle" x="4565" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">buildPromotorRegions</text>
396</g>
397<!-- t32&#45;&gt;t40 -->
398<g id="edge3" class="edge"><title>t32&#45;&gt;t40</title>
399<path style="fill:none;stroke:gray;" d="M4555,-554C4557,-537 4560,-511 4562,-490"/>
400<polygon style="fill:gray;stroke:gray;" points="4565.49,-490.299 4563,-480 4558.52,-489.602 4565.49,-490.299"/>
401</g>
402<!-- t41 -->
403<g id="node9" class="node"><title>t41</title>
404<polygon style="fill:#90ee90;stroke:green;" points="4836,-480 4684,-480 4680,-476 4680,-444 4832,-444 4836,-448 4836,-480"/>
405<polyline style="fill:none;stroke:green;" points="4832,-476 4680,-476 "/>
406<polyline style="fill:none;stroke:green;" points="4832,-476 4832,-444 "/>
407<polyline style="fill:none;stroke:green;" points="4832,-476 4836,-480 "/>
408<text text-anchor="middle" x="4758" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">buildTSSRegions</text>
409</g>
410<!-- t32&#45;&gt;t41 -->
411<g id="edge5" class="edge"><title>t32&#45;&gt;t41</title>
412<path style="fill:none;stroke:gray;" d="M4587,-554C4622,-535 4677,-506 4715,-485"/>
413<polygon style="fill:gray;stroke:gray;" points="4716.96,-487.916 4724,-480 4713.56,-481.797 4716.96,-487.916"/>
414</g>
415<!-- t34 -->
416<g id="node12" class="node"><title>t34</title>
417<polygon style="fill:#90ee90;stroke:green;" points="3027,-480 2873,-480 2869,-476 2869,-444 3023,-444 3027,-448 3027,-480"/>
418<polyline style="fill:none;stroke:green;" points="3023,-476 2869,-476 "/>
419<polyline style="fill:none;stroke:green;" points="3023,-476 3023,-444 "/>
420<polyline style="fill:none;stroke:green;" points="3023,-476 3027,-480 "/>
421<text text-anchor="middle" x="2948" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">importTranscripts</text>
422</g>
423<!-- t32&#45;&gt;t34 -->
424<g id="edge7" class="edge"><title>t32&#45;&gt;t34</title>
425<path style="fill:none;stroke:gray;" d="M4480,-565C4372,-555 4166,-536 3989,-528 3884,-522 3139,-531 3036,-506 3019,-502 3001,-494 2986,-485"/>
426<polygon style="fill:gray;stroke:gray;" points="2987.44,-481.797 2977,-480 2984.04,-487.916 2987.44,-481.797"/>
427</g>
428<!-- t32&#45;&gt;t181 -->
429<g id="edge363" class="edge"><title>t32&#45;&gt;t181</title>
430<path style="fill:none;stroke:gray;" d="M4480,-565C4372,-555 4166,-536 3989,-528 3864,-521 2982,-537 2860,-506 2760,-479 2725,-472 2655,-396 2644,-383 2655,-369 2640,-360 2572,-313 1228,-366 1150,-338 1139,-334 1129,-327 1120,-319"/>
431<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
432</g>
433<!-- t40&#45;&gt;t42 -->
434<g id="edge337" class="edge"><title>t40&#45;&gt;t42</title>
435<path style="fill:none;stroke:gray;" d="M4599,-444C4619,-434 4646,-423 4671,-418 4814,-388 9690,-407 9987,-396"/>
436<polygon style="fill:gray;stroke:gray;" points="9987.4,-399.478 9997,-395 9986.7,-392.512 9987.4,-399.478"/>
437</g>
438<!-- t40&#45;&gt;t181 -->
439<g id="edge347" class="edge"><title>t40&#45;&gt;t181</title>
440<path style="fill:none;stroke:gray;" d="M4531,-444C4511,-434 4484,-423 4459,-418 4374,-400 2964,-434 2885,-396 2867,-386 2876,-369 2857,-360 2773,-317 1240,-370 1150,-338 1139,-334 1129,-327 1120,-319"/>
441<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
442</g>
443<!-- t41&#45;&gt;t42 -->
444<g id="edge11" class="edge"><title>t41&#45;&gt;t42</title>
445<path style="fill:none;stroke:gray;" d="M4836,-454C4943,-443 5139,-425 5307,-418 5824,-395 9426,-438 9987,-396"/>
446<polygon style="fill:gray;stroke:gray;" points="9987.4,-399.478 9997,-395 9986.7,-392.512 9987.4,-399.478"/>
447</g>
448<!-- t41&#45;&gt;t181 -->
449<g id="edge345" class="edge"><title>t41&#45;&gt;t181</title>
450<path style="fill:none;stroke:gray;" d="M4731,-444C4715,-434 4693,-423 4671,-418 4624,-406 2943,-421 2900,-396 2885,-386 2896,-369 2880,-360 2798,-310 1241,-370 1150,-338 1139,-334 1129,-327 1120,-319"/>
451<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
452</g>
453<!-- t35 -->
454<g id="node11" class="node"><title>t35</title>
455<polygon style="fill:#90ee90;stroke:green;" points="2443,-396 2327,-396 2323,-392 2323,-360 2439,-360 2443,-364 2443,-396"/>
456<polyline style="fill:none;stroke:green;" points="2439,-392 2323,-392 "/>
457<polyline style="fill:none;stroke:green;" points="2439,-392 2439,-360 "/>
458<polyline style="fill:none;stroke:green;" points="2439,-392 2443,-396 "/>
459<text text-anchor="middle" x="2383" y="-371.5" style="font-family:Times New Roman;font-size:20.00;">buildRepeats</text>
460</g>
461<!-- t35&#45;&gt;t181 -->
462<g id="edge357" class="edge"><title>t35&#45;&gt;t181</title>
463<path style="fill:none;stroke:gray;" d="M2323,-362C2318,-361 2314,-361 2309,-360 2246,-351 1209,-360 1148,-338 1137,-334 1128,-327 1119,-320"/>
464<polygon style="fill:gray;stroke:gray;" points="1121.22,-317.221 1112,-312 1115.95,-321.831 1121.22,-317.221"/>
465</g>
466<!-- t34&#45;&gt;t181 -->
467<g id="edge359" class="edge"><title>t34&#45;&gt;t181</title>
468<path style="fill:none;stroke:gray;" d="M2923,-444C2906,-431 2883,-413 2865,-396 2851,-381 2854,-368 2835,-360 2751,-319 1238,-369 1150,-338 1139,-334 1129,-327 1120,-319"/>
469<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
470</g>
471<!-- t8 -->
472<g id="node14" class="node"><title>t8</title>
473<polygon style="fill:#90ee90;stroke:green;" points="3105,-590 2895,-590 2891,-586 2891,-554 3101,-554 3105,-558 3105,-590"/>
474<polyline style="fill:none;stroke:green;" points="3101,-586 2891,-586 "/>
475<polyline style="fill:none;stroke:green;" points="3101,-586 3101,-554 "/>
476<polyline style="fill:none;stroke:green;" points="3101,-586 3105,-590 "/>
477<text text-anchor="middle" x="2998" y="-565.5" style="font-family:Times New Roman;font-size:20.00;">importRegionsOfInterest</text>
478</g>
479<!-- t14 -->
480<g id="node17" class="node"><title>t14</title>
481<polygon style="fill:#90ee90;stroke:green;" points="3257,-480 3049,-480 3045,-476 3045,-444 3253,-444 3257,-448 3257,-480"/>
482<polyline style="fill:none;stroke:green;" points="3253,-476 3045,-476 "/>
483<polyline style="fill:none;stroke:green;" points="3253,-476 3253,-444 "/>
484<polyline style="fill:none;stroke:green;" points="3253,-476 3257,-480 "/>
485<text text-anchor="middle" x="3151" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">exportRegionsOfInterest</text>
486</g>
487<!-- t8&#45;&gt;t14 -->
488<g id="edge335" class="edge"><title>t8&#45;&gt;t14</title>
489<path style="fill:none;stroke:gray;" d="M3023,-554C3049,-536 3090,-507 3118,-486"/>
490<polygon style="fill:gray;stroke:gray;" points="3120.1,-488.8 3126,-480 3115.9,-483.2 3120.1,-488.8"/>
491</g>
492<!-- t12 -->
493<g id="node30" class="node"><title>t12</title>
494<polygon style="fill:#90ee90;stroke:green;" points="2310,-480 2050,-480 2046,-476 2046,-444 2306,-444 2310,-448 2310,-480"/>
495<polyline style="fill:none;stroke:green;" points="2306,-476 2046,-476 "/>
496<polyline style="fill:none;stroke:green;" points="2306,-476 2306,-444 "/>
497<polyline style="fill:none;stroke:green;" points="2306,-476 2310,-480 "/>
498<text text-anchor="middle" x="2178" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">importRegionsOfInterestGenes</text>
499</g>
500<!-- t8&#45;&gt;t12 -->
501<g id="edge343" class="edge"><title>t8&#45;&gt;t12</title>
502<path style="fill:none;stroke:gray;" d="M2891,-560C2805,-551 2683,-538 2576,-528 2465,-517 2435,-527 2324,-506 2296,-501 2265,-491 2239,-483"/>
503<polygon style="fill:gray;stroke:gray;" points="2239.58,-479.521 2229,-480 2237.57,-486.226 2239.58,-479.521"/>
504</g>
505<!-- t8&#45;&gt;t181 -->
506<g id="edge373" class="edge"><title>t8&#45;&gt;t181</title>
507<path style="fill:none;stroke:gray;" d="M2933,-554C2907,-544 2879,-528 2860,-506 2850,-493 2834,-370 2820,-360 2784,-331 1194,-353 1150,-338 1139,-334 1129,-327 1120,-319"/>
508<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
509</g>
510<!-- t8&#45;&gt;t178 -->
511<g id="edge483" class="edge"><title>t8&#45;&gt;t178</title>
512<path style="fill:none;stroke:gray;" d="M3105,-564C3249,-553 3512,-535 3737,-528 5421,-473 5843,-559 7526,-506 8377,-479 8594,-490 9443,-396"/>
513<polygon style="fill:gray;stroke:gray;" points="9443.4,-399.478 9453,-395 9442.7,-392.512 9443.4,-399.478"/>
514</g>
515<!-- t10 -->
516<g id="node15" class="node"><title>t10</title>
517<polygon style="fill:#90ee90;stroke:green;" points="2110.05,-559.794 2178,-532.5 2245.95,-559.794 2245.89,-603.956 2110.11,-603.956 2110.05,-559.794"/>
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519<text text-anchor="middle" x="2178" y="-565.5" style="font-family:Times New Roman;font-size:20.00;">importGWAS</text>
520</g>
521<!-- t10&#45;&gt;t14 -->
522<g id="edge333" class="edge"><title>t10&#45;&gt;t14</title>
523<path style="fill:none;stroke:gray;" d="M2239,-553C2271,-543 2311,-533 2348,-528 2500,-506 2887,-536 3036,-506 3059,-502 3083,-493 3104,-484"/>
524<polygon style="fill:gray;stroke:gray;" points="3105.28,-487.26 3113,-480 3102.44,-480.863 3105.28,-487.26"/>
525</g>
526<!-- t10&#45;&gt;t12 -->
527<g id="edge341" class="edge"><title>t10&#45;&gt;t12</title>
528<path style="fill:none;stroke:gray;" d="M2178,-528C2178,-515 2178,-502 2178,-490"/>
529<polygon style="fill:gray;stroke:gray;" points="2181.5,-490 2178,-480 2174.5,-490 2181.5,-490"/>
530</g>
531<!-- t10&#45;&gt;t181 -->
532<g id="edge371" class="edge"><title>t10&#45;&gt;t181</title>
533<path style="fill:none;stroke:gray;" d="M2119,-552C2092,-541 2061,-525 2037,-506 1990,-467 1988,-447 1954,-396 1945,-380 1950,-369 1934,-360 1860,-314 1232,-368 1150,-338 1139,-334 1129,-327 1120,-319"/>
534<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
535</g>
536<!-- t11 -->
537<g id="node16" class="node"><title>t11</title>
538<polygon style="fill:#90ee90;stroke:green;" points="2360.83,-559.794 2462,-532.5 2563.17,-559.794 2563.08,-603.956 2360.92,-603.956 2360.83,-559.794"/>
539<polygon style="fill:none;stroke:green;" points="2356.84,-556.728 2462,-528.358 2567.16,-556.728 2567.05,-607.956 2356.95,-607.956 2356.84,-556.728"/>
540<text text-anchor="middle" x="2462" y="-565.5" style="font-family:Times New Roman;font-size:20.00;">importMergedGWAS</text>
541</g>
542<!-- t11&#45;&gt;t14 -->
543<g id="edge9" class="edge"><title>t11&#45;&gt;t14</title>
544<path style="fill:none;stroke:gray;" d="M2567,-561C2720,-546 2992,-517 3036,-506 3058,-500 3082,-492 3102,-484"/>
545<polygon style="fill:gray;stroke:gray;" points="3103.28,-487.26 3111,-480 3100.44,-480.863 3103.28,-487.26"/>
546</g>
547<!-- t11&#45;&gt;t12 -->
548<g id="edge17" class="edge"><title>t11&#45;&gt;t12</title>
549<path style="fill:none;stroke:gray;" d="M2395,-546C2346,-527 2280,-502 2234,-484"/>
550<polygon style="fill:gray;stroke:gray;" points="2235.56,-480.863 2225,-480 2232.72,-487.26 2235.56,-480.863"/>
551</g>
552<!-- t14&#45;&gt;t181 -->
553<g id="edge365" class="edge"><title>t14&#45;&gt;t181</title>
554<path style="fill:none;stroke:gray;" d="M3114,-444C3092,-434 3063,-423 3036,-418 2956,-401 2373,-431 2299,-396 2281,-386 2288,-369 2269,-360 2157,-306 1267,-380 1150,-338 1139,-334 1129,-327 1120,-319"/>
555<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
556</g>
557<!-- t121 -->
558<g id="node221" class="node"><title>t121</title>
559<polygon style="fill:none;stroke:blue;" points="6551,-396 6269,-396 6265,-392 6265,-360 6547,-360 6551,-364 6551,-396"/>
560<polyline style="fill:none;stroke:blue;" points="6547,-392 6265,-392 "/>
561<polyline style="fill:none;stroke:blue;" points="6547,-392 6547,-360 "/>
562<polyline style="fill:none;stroke:blue;" points="6547,-392 6551,-396 "/>
563<text text-anchor="middle" x="6408" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorRegionsOfInterest</text>
564</g>
565<!-- t14&#45;&gt;t121 -->
566<g id="edge201" class="edge"><title>t14&#45;&gt;t121</title>
567<path style="fill:none;stroke:gray;" d="M3257,-452C3374,-441 3569,-424 3736,-418 4293,-394 5682,-431 6255,-396"/>
568<polygon style="fill:gray;stroke:gray;" points="6255.4,-399.478 6265,-395 6254.7,-392.512 6255.4,-399.478"/>
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570<!-- t160 -->
571<g id="node236" class="node"><title>t160</title>
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576<text text-anchor="middle" x="3451" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorRegionsOfInterestTop</text>
577</g>
578<!-- t14&#45;&gt;t160 -->
579<g id="edge217" class="edge"><title>t14&#45;&gt;t160</title>
580<path style="fill:none;stroke:gray;" d="M3215,-444C3263,-431 3327,-413 3376,-399"/>
581<polygon style="fill:gray;stroke:gray;" points="3377.43,-402.226 3386,-396 3375.42,-395.521 3377.43,-402.226"/>
582</g>
583<!-- t161 -->
584<g id="node240" class="node"><title>t161</title>
585<polygon style="fill:none;stroke:blue;" points="3255,-396 2913,-396 2909,-392 2909,-360 3251,-360 3255,-364 3255,-396"/>
586<polyline style="fill:none;stroke:blue;" points="3251,-392 2909,-392 "/>
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588<polyline style="fill:none;stroke:blue;" points="3251,-392 3255,-396 "/>
589<text text-anchor="middle" x="3082" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorRegionsOfInterestBottom</text>
590</g>
591<!-- t14&#45;&gt;t161 -->
592<g id="edge221" class="edge"><title>t14&#45;&gt;t161</title>
593<path style="fill:none;stroke:gray;" d="M3136,-444C3127,-432 3114,-417 3103,-404"/>
594<polygon style="fill:gray;stroke:gray;" points="3105.8,-401.9 3097,-396 3100.2,-406.1 3105.8,-401.9"/>
595</g>
596<!-- t151 -->
597<g id="node265" class="node"><title>t151</title>
598<polygon style="fill:none;stroke:blue;" points="4411,-396 4045,-396 4041,-392 4041,-360 4407,-360 4411,-364 4411,-396"/>
599<polyline style="fill:none;stroke:blue;" points="4407,-392 4041,-392 "/>
600<polyline style="fill:none;stroke:blue;" points="4407,-392 4407,-360 "/>
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602<text text-anchor="middle" x="4226" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorRegionsOfInterestWithMotif</text>
603</g>
604<!-- t14&#45;&gt;t151 -->
605<g id="edge249" class="edge"><title>t14&#45;&gt;t151</title>
606<path style="fill:none;stroke:gray;" d="M3257,-454C3374,-445 3569,-430 3736,-418 3865,-408 3899,-406 4031,-396"/>
607<polygon style="fill:gray;stroke:gray;" points="4031.4,-399.478 4041,-395 4030.7,-392.512 4031.4,-399.478"/>
608</g>
609<!-- t152 -->
610<g id="node269" class="node"><title>t152</title>
611<polygon style="fill:none;stroke:blue;" points="4023,-396 3631,-396 3627,-392 3627,-360 4019,-360 4023,-364 4023,-396"/>
612<polyline style="fill:none;stroke:blue;" points="4019,-392 3627,-392 "/>
613<polyline style="fill:none;stroke:blue;" points="4019,-392 4019,-360 "/>
614<polyline style="fill:none;stroke:blue;" points="4019,-392 4023,-396 "/>
615<text text-anchor="middle" x="3825" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorRegionsOfInterestWithoutMotif</text>
616</g>
617<!-- t14&#45;&gt;t152 -->
618<g id="edge253" class="edge"><title>t14&#45;&gt;t152</title>
619<path style="fill:none;stroke:gray;" d="M3257,-449C3368,-435 3543,-413 3670,-397"/>
620<polygon style="fill:gray;stroke:gray;" points="3670.4,-400.478 3680,-396 3669.7,-393.512 3670.4,-400.478"/>
621</g>
622<!-- t13 -->
623<g id="node19" class="node"><title>t13</title>
624<polygon style="fill:#90ee90;stroke:green;" points="3749.02,-449.794 3854,-422.5 3958.98,-449.794 3958.88,-493.956 3749.12,-493.956 3749.02,-449.794"/>
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626<text text-anchor="middle" x="3854" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">importSNPsOfInterest</text>
627</g>
628<!-- t13&#45;&gt;t181 -->
629<g id="edge367" class="edge"><title>t13&#45;&gt;t181</title>
630<path style="fill:none;stroke:gray;" d="M3745,-452C3627,-442 3433,-427 3266,-418 3201,-414 2738,-427 2680,-396 2663,-386 2673,-369 2655,-360 2582,-320 1229,-366 1150,-338 1139,-334 1129,-327 1120,-319"/>
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632</g>
633<!-- t179 -->
634<g id="node182" class="node"><title>t179</title>
635<polygon style="fill:#90ee90;stroke:green;" points="9435,-396 9269,-396 9265,-392 9265,-360 9431,-360 9435,-364 9435,-396"/>
636<polyline style="fill:none;stroke:green;" points="9431,-392 9265,-392 "/>
637<polyline style="fill:none;stroke:green;" points="9431,-392 9431,-360 "/>
638<polyline style="fill:none;stroke:green;" points="9431,-392 9435,-396 "/>
639<text text-anchor="middle" x="9350" y="-371.5" style="font-family:Times New Roman;font-size:20.00;">buildSNPCoverage</text>
640</g>
641<!-- t13&#45;&gt;t179 -->
642<g id="edge481" class="edge"><title>t13&#45;&gt;t179</title>
643<path style="fill:none;stroke:gray;" d="M3959,-446C4029,-435 4124,-423 4207,-418 4764,-382 8652,-449 9255,-396"/>
644<polygon style="fill:gray;stroke:gray;" points="9255.4,-399.478 9265,-395 9254.7,-392.512 9255.4,-399.478"/>
645</g>
646<!-- t42&#45;&gt;t181 -->
647<g id="edge19" class="edge"><title>t42&#45;&gt;t181</title>
648<path style="fill:none;stroke:gray;" d="M9997,-361C9994,-361 9991,-360 9988,-360 9866,-349 1281,-373 1163,-338 1149,-334 1137,-326 1125,-318"/>
649<polygon style="fill:gray;stroke:gray;" points="1127.1,-315.2 1117,-312 1122.9,-320.8 1127.1,-315.2"/>
650</g>
651<!-- t60 -->
652<g id="node141" class="node"><title>t60</title>
653<polygon style="fill:#90ee90;stroke:green;" points="10088.2,-281.794 10154,-254.5 10219.8,-281.794 10219.7,-325.956 10088.3,-325.956 10088.2,-281.794"/>
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655<text text-anchor="middle" x="10154" y="-287.5" style="font-family:Times New Roman;font-size:20.00;">buildOverlap</text>
656</g>
657<!-- t42&#45;&gt;t60 -->
658<g id="edge125" class="edge"><title>t42&#45;&gt;t60</title>
659<path style="fill:none;stroke:gray;" d="M10110,-360C10114,-354 10119,-346 10124,-339"/>
660<polygon style="fill:gray;stroke:gray;" points="10127.4,-340.262 10130,-330 10121.5,-336.379 10127.4,-340.262"/>
661</g>
662<!-- t62 -->
663<g id="node145" class="node"><title>t62</title>
664<polygon style="fill:#90ee90;stroke:green;" points="10693.9,-281.794 10788,-254.5 10882.1,-281.794 10882,-325.956 10694,-325.956 10693.9,-281.794"/>
665<polygon style="fill:none;stroke:green;" points="10689.9,-278.787 10788,-250.337 10886.1,-278.787 10886,-329.956 10690,-329.956 10689.9,-278.787"/>
666<text text-anchor="middle" x="10788" y="-287.5" style="font-family:Times New Roman;font-size:20.00;">buildUCSCOverlap</text>
667</g>
668<!-- t42&#45;&gt;t62 -->
669<g id="edge129" class="edge"><title>t42&#45;&gt;t62</title>
670<path style="fill:none;stroke:gray;" d="M10199,-368C10234,-365 10273,-362 10308,-360 10474,-348 10520,-374 10681,-338 10687,-337 10693,-335 10698,-333"/>
671<polygon style="fill:gray;stroke:gray;" points="10699.4,-336.226 10708,-330 10697.4,-329.521 10699.4,-336.226"/>
672</g>
673<!-- t3 -->
674<g id="node22" class="node"><title>t3</title>
675<polygon style="fill:#90ee90;stroke:green;" points="3980,-590 3750,-590 3746,-586 3746,-554 3976,-554 3980,-558 3980,-590"/>
676<polyline style="fill:none;stroke:green;" points="3976,-586 3746,-586 "/>
677<polyline style="fill:none;stroke:green;" points="3976,-586 3976,-554 "/>
678<polyline style="fill:none;stroke:green;" points="3976,-586 3980,-590 "/>
679<text text-anchor="middle" x="3863" y="-565.5" style="font-family:Times New Roman;font-size:20.00;">importUCSCEncodeTracks</text>
680</g>
681<!-- t5 -->
682<g id="node23" class="node"><title>t5</title>
683<polygon style="fill:#90ee90;stroke:green;" points="4450,-480 4220,-480 4216,-476 4216,-444 4446,-444 4450,-448 4450,-480"/>
684<polyline style="fill:none;stroke:green;" points="4446,-476 4216,-476 "/>
685<polyline style="fill:none;stroke:green;" points="4446,-476 4446,-444 "/>
686<polyline style="fill:none;stroke:green;" points="4446,-476 4450,-480 "/>
687<text text-anchor="middle" x="4333" y="-455.5" style="font-family:Times New Roman;font-size:20.00;">exportUCSCEncodeTracks</text>
688</g>
689<!-- t3&#45;&gt;t5 -->
690<g id="edge13" class="edge"><title>t3&#45;&gt;t5</title>
691<path style="fill:none;stroke:gray;" d="M3940,-554C4024,-535 4159,-503 4246,-482"/>
692<polygon style="fill:gray;stroke:gray;" points="4246.88,-485.393 4256,-480 4245.51,-478.529 4246.88,-485.393"/>
693</g>
694<!-- t3&#45;&gt;t181 -->
695<g id="edge381" class="edge"><title>t3&#45;&gt;t181</title>
696<path style="fill:none;stroke:gray;" d="M3746,-564C3599,-554 3338,-538 3114,-528 3045,-524 2553,-524 2485,-506 2405,-484 2395,-454 2319,-418 2298,-407 2288,-411 2269,-396 2254,-383 2262,-369 2244,-360 2191,-331 1208,-358 1150,-338 1139,-334 1129,-327 1120,-319"/>
697<polygon style="fill:gray;stroke:gray;" points="1122.55,-316.596 1113,-312 1117.6,-321.546 1122.55,-316.596"/>
698</g>
699<!-- t5&#45;&gt;t181 -->
700<g id="edge379" class="edge"><title>t5&#45;&gt;t181</title>
701<path style="fill:none;stroke:gray;" d="M4216,-444C4145,-434 4054,-423 3972,-418 3927,-414 2355,-418 2314,-396 2298,-386 2309,-369 2292,-360 2237,-328 1210,-359 1150,-338 1139,-334 1129,-327 1120,-319"/>
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703</g>
704<!-- t5&#45;&gt;t62 -->
705<g id="edge475" class="edge"><title>t5&#45;&gt;t62</title>
706<path style="fill:none;stroke:gray;" d="M4374,-444C4398,-434 4430,-423 4459,-418 4502,-410 10633,-419 10668,-396 10683,-386 10672,-373 10683,-360 10691,-351 10699,-343 10709,-336"/>
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709<!-- t120 -->
710<g id="node201" class="node"><title>t120</title>
711<polygon style="fill:#90ee90;stroke:green;" points="5949,-396 5759,-396 5755,-392 5755,-360 5945,-360 5949,-364 5949,-396"/>
712<polyline style="fill:none;stroke:green;" points="5945,-392 5755,-392 "/>
713<polyline style="fill:none;stroke:green;" points="5945,-392 5945,-360 "/>
714<polyline style="fill:none;stroke:green;" points="5945,-392 5949,-396 "/>
715<text text-anchor="middle" x="5852" y="-371.5" style="font-family:Times New Roman;font-size:20.00;">makeAnnotatorTracks</text>
716</g>
717<!-- t5&#45;&gt;t120 -->
718<g id="edge181" class="edge"><title>t5&#45;&gt;t120</title>
719<path style="fill:none;stroke:gray;" d="M4374,-444C4398,-434 4430,-423 4459,-418 4597,-393 5564,-408 5745,-396"/>
720<polygon style="fill:gray;stroke:gray;" points="5745.4,-399.478 5755,-395 5744.7,-392.512 5745.4,-399.478"/>
721</g>
722<!-- t149 -->
723<g id="node257" class="node"><title>t149</title>
724<polygon style="fill:none;stroke:blue;" points="4707,-396 4433,-396 4429,-392 4429,-360 4703,-360 4707,-364 4707,-396"/>
725<polyline style="fill:none;stroke:blue;" points="4703,-392 4429,-392 "/>
726<polyline style="fill:none;stroke:blue;" points="4703,-392 4703,-360 "/>
727<polyline style="fill:none;stroke:blue;" points="4703,-392 4707,-396 "/>
728<text text-anchor="middle" x="4568" y="-371.5" style="font-family:Times New Roman;font-size:20.00;fill:blue;">makeAnnotatorTracksWithMotif</text>
729</g>
730<!-- t5&#45;&gt;t149 -->
731<g id="edge241" class="edge"><title>t5&#45;&gt;t149</title>
732<path style="fill:none;stroke:gray;" d="M4383,-444C4419,-431 4469,-413 4507,-399"/>
733<polygon style="fill:gray;stroke:gray;" points="4508.43,-402.226 4517,-396 4506.42,-395.521 4508.43,-402.226"/>
734</g>
735<!-- t150 -->
736<g id="node261" class="node"><title>t150</title>
737<polygon style="fill:#90ee90;stroke:green;" points="5027,-396 4

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