/matlab/get_training_sequences_intergenic_long.m
Objective C | 14 lines | 13 code | 1 blank | 0 comment | 2 complexity | 63f980838867caf8b1e1b9061cb618b9 MD5 | raw file
Possible License(s): GPL-2.0
1% Returns sequences for training HMM (used to export data for GHMM) 2% Input: 3% seq - sequence with annotated genes 4% Output: 5% res - cell array with intergnenic regions 6function [res] = get_training_sequences_intergenic_long(seq) 7 % Just in case, but better do it when loading the genome 8 seq.Sequence = upper(seq.Sequence); 9 10 seq = HMM_Intergenic.get_intergenic(seq, true, true); 11 seq = HMM_Intergenic.select_intergenic(seq, 10, Inf); 12 seq = HMM.select_genes(seq, true, false, false); 13 res = HMM.get_training_sequences(seq); 14end