/FiniteElasticity/QuadraticEllipsoid/src/QuadraticEllipsoidExample.f90

http://github.com/xyan075/examples · Fortran Modern · 559 lines · 382 code · 71 blank · 106 comment · 0 complexity · 85f98210a478311aca59b9681ddd0f59 MD5 · raw file

  1. !> \file
  2. !> \author Chris Bradley
  3. !> \brief This is an example program to solve a finite elasticity equation using openCMISS calls.
  4. !>
  5. !> \section LICENSE
  6. !>
  7. !> Version: MPL 1.1/GPL 2.0/LGPL 2.1
  8. !>
  9. !> The contents of this file are subject to the Mozilla Public License
  10. !> Version 1.1 (the "License"); you may not use this file except in
  11. !> compliance with the License. You may obtain a copy of the License at
  12. !> http://www.mozilla.org/MPL/
  13. !>
  14. !> Software distributed under the License is distributed on an "AS IS"
  15. !> basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
  16. !> License for the specific language governing rights and limitations
  17. !> under the License.
  18. !>
  19. !> The Original Code is openCMISS
  20. !>
  21. !> The Initial Developer of the Original Code is University of Auckland,
  22. !> Auckland, New Zealand and University of Oxford, Oxford, United
  23. !> Kingdom. Portions created by the University of Auckland and University
  24. !> of Oxford are Copyright (C) 2007 by the University of Auckland and
  25. !> the University of Oxford. All Rights Reserved.
  26. !>
  27. !> Contributor(s): Jack Lee
  28. !>
  29. !> Alternatively, the contents of this file may be used under the terms of
  30. !> either the GNU General Public License Version 2 or later (the "GPL"), or
  31. !> the GNU Lesser General Public License Version 2.1 or later (the "LGPL"),
  32. !> in which case the provisions of the GPL or the LGPL are applicable instead
  33. !> of those above. If you wish to allow use of your version of this file only
  34. !> under the terms of either the GPL or the LGPL, and not to allow others to
  35. !> use your version of this file under the terms of the MPL, indicate your
  36. !> decision by deleting the provisions above and replace them with the notice
  37. !> and other provisions required by the GPL or the LGPL. If you do not delete
  38. !> the provisions above, a recipient may use your version of this file under
  39. !> the terms of any one of the MPL, the GPL or the LGPL.
  40. !>
  41. !> \example FiniteElasticity/UniAxialExtension/src/UniAxialExtensionExample.f90
  42. !! Example program to solve a finite elasticity equation using openCMISS calls.
  43. !! \par Latest Builds:
  44. !! \li <a href='http://autotest.bioeng.auckland.ac.nz/opencmiss-build/logs_x86_64-linux/FiniteElasticity/UniAxialExtension/build-intel'>Linux Intel Build</a>
  45. !! \li <a href='http://autotest.bioeng.auckland.ac.nz/opencmiss-build/logs_x86_64-linux/FiniteElasticity/UniAxialExtension/build-gnu'>Linux GNU Build</a>
  46. !<
  47. !> Main program
  48. PROGRAM QUADRATICELLIPSOIDEEXAMPLE
  49. USE OPENCMISS
  50. USE MPI
  51. #ifdef WIN32
  52. USE IFQWIN
  53. #endif
  54. IMPLICIT NONE
  55. !Test program parameters
  56. REAL(CMISSDP), PARAMETER :: PI=3.14159_CMISSDP
  57. REAL(CMISSDP), PARAMETER :: LONG_AXIS=2.0_CMISSDP
  58. REAL(CMISSDP), PARAMETER :: SHORT_AXIS=1.0_CMISSDP
  59. REAL(CMISSDP), PARAMETER :: WALL_THICKNESS=0.5_CMISSDP
  60. REAL(CMISSDP), PARAMETER :: CUTOFF_ANGLE=1.5708_CMISSDP
  61. REAL(CMISSDP), PARAMETER :: FIBRE_SLOPE_INTERSECTION=1.73205_CMISSDP !Slope of fibres in base endocardium = 60 degrees
  62. REAL(CMISSDP), PARAMETER :: FIBRE_SLOPE_CHANGE=-3.4641_CMISSDP !Slope change of fibres from 60 to -60 degrees in transmural direction
  63. REAL(CMISSDP), PARAMETER :: SHEET_SLOPE_BASE_ENDO=1.0_CMISSDP !Slope of sheet at base endocardium
  64. REAL(CMISSDP), PARAMETER :: INNER_PRESSURE=2.0_CMISSDP !Positive is compressive
  65. REAL(CMISSDP), PARAMETER :: OUTER_PRESSURE=0.0_CMISSDP !Positive is compressive
  66. INTEGER(CMISSIntg), PARAMETER :: NumberGlobalXElements=4 ! X ==NUMBER_GLOBAL_CIRCUMFERENTIAL_ELEMENTS
  67. INTEGER(CMISSIntg), PARAMETER :: NumberGlobalYElements=4 ! Y ==NUMBER_GLOBAL_LONGITUDINAL_ELEMENTS
  68. INTEGER(CMISSIntg), PARAMETER :: NumberGlobalZElements=1 ! Z ==NUMBER_GLOBAL_TRANSMURAL_ELEMENTS
  69. INTEGER(CMISSIntg) :: NumberOfDomains
  70. INTEGER(CMISSIntg), PARAMETER :: CoordinateSystemUserNumber=1
  71. INTEGER(CMISSIntg), PARAMETER :: NumberOfSpatialCoordinates=3
  72. INTEGER(CMISSIntg), PARAMETER :: RegionUserNumber=1
  73. INTEGER(CMISSIntg), PARAMETER :: QuadraticBasisUserNumber=1
  74. INTEGER(CMISSIntg), PARAMETER :: QuadraticCollapsedBasisUserNumber=2
  75. INTEGER(CMISSIntg), PARAMETER :: LinearBasisUserNumber=3
  76. INTEGER(CMISSIntg), PARAMETER :: LinearCollapsedBasisUserNumber=4
  77. INTEGER(CMISSIntg), PARAMETER :: MeshUserNumber=1
  78. INTEGER(CMISSIntg), PARAMETER :: GeneratedMeshUserNumber=2
  79. INTEGER(CMISSIntg), PARAMETER :: DecompositionUserNumber=1
  80. INTEGER(CMISSIntg), PARAMETER :: DerivativeUserNumber=1
  81. INTEGER(CMISSIntg), PARAMETER :: NumberOfMeshDimensions=3
  82. INTEGER(CMISSIntg), PARAMETER :: NumberOfXiCoordinates=3
  83. INTEGER(CMISSIntg), PARAMETER :: NumberOfMeshComponents=2
  84. INTEGER(CMISSIntg), PARAMETER :: QuadraticMeshComponentNumber=1
  85. INTEGER(CMISSIntg), PARAMETER :: LinearMeshComponentNumber=2
  86. INTEGER(CMISSIntg), PARAMETER :: TotalNumberOfElements=1
  87. INTEGER(CMISSIntg), PARAMETER :: FieldGeometryUserNumber=1
  88. INTEGER(CMISSIntg), PARAMETER :: FieldGeometryNumberOfVariables=1
  89. INTEGER(CMISSIntg), PARAMETER :: FieldGeometryNumberOfComponents=3
  90. INTEGER(CMISSIntg), PARAMETER :: FieldFibreUserNumber=2
  91. INTEGER(CMISSIntg), PARAMETER :: FieldFibreNumberOfVariables=1
  92. INTEGER(CMISSIntg), PARAMETER :: FieldFibreNumberOfComponents=3
  93. INTEGER(CMISSIntg), PARAMETER :: FieldMaterialUserNumber=3
  94. INTEGER(CMISSIntg), PARAMETER :: FieldMaterialNumberOfVariables=1
  95. INTEGER(CMISSIntg), PARAMETER :: FieldMaterialNumberOfComponents=2
  96. INTEGER(CMISSIntg), PARAMETER :: FieldDependentUserNumber=4
  97. INTEGER(CMISSIntg), PARAMETER :: FieldDependentNumberOfVariables=2
  98. INTEGER(CMISSIntg), PARAMETER :: FieldDependentNumberOfComponents=4
  99. INTEGER(CMISSIntg), PARAMETER :: EquationSetUserNumber=1
  100. INTEGER(CMISSIntg), PARAMETER :: EquationsSetFieldUserNumber=13
  101. INTEGER(CMISSIntg), PARAMETER :: ProblemUserNumber=1
  102. !Program types
  103. !Program variables
  104. INTEGER(CMISSIntg) :: MPI_IERROR
  105. INTEGER(CMISSIntg) :: EquationsSetIndex
  106. INTEGER(CMISSIntg) :: NumberOfComputationalNodes,ComputationalNodeNumber
  107. REAL(CMISSDP) :: FibreFieldAngle(3)
  108. REAL(CMISSDP) :: nu,theta,omega,XI3,XI3delta,XI2delta, zero
  109. INTEGER(CMISSIntg) ::i,j,k,component_idx,node_idx,TOTAL_NUMBER_NODES_XI(3)
  110. !For grabbing surfaces
  111. INTEGER(CMISSIntg) :: InnerNormalXi,OuterNormalXi,TopNormalXi
  112. INTEGER(CMISSIntg), ALLOCATABLE :: InnerSurfaceNodes(:)
  113. INTEGER(CMISSIntg), ALLOCATABLE :: OuterSurfaceNodes(:)
  114. INTEGER(CMISSIntg), ALLOCATABLE :: TopSurfaceNodes(:)
  115. INTEGER(CMISSIntg) :: NN,NODE,NodeDomain
  116. REAL(CMISSDP) :: XCoord,YCoord,ZCoord
  117. LOGICAL :: X_FIXED,Y_FIXED,X_OKAY,Y_OKAY
  118. !CMISS variables
  119. TYPE(CMISSBasisType) :: QuadraticBasis,QuadraticCollapsedBasis,LinearBasis,LinearCollapsedBasis
  120. TYPE(CMISSBoundaryConditionsType) :: BoundaryConditions
  121. TYPE(CMISSCoordinateSystemType) :: CoordinateSystem, WorldCoordinateSystem
  122. TYPE(CMISSMeshType) :: Mesh
  123. TYPE(CMISSGeneratedMeshType) :: GeneratedMesh
  124. TYPE(CMISSDecompositionType) :: Decomposition
  125. TYPE(CMISSEquationsType) :: Equations
  126. TYPE(CMISSEquationsSetType) :: EquationsSet
  127. TYPE(CMISSFieldType) :: GeometricField,FibreField,MaterialField,DependentField,EquationsSetField
  128. TYPE(CMISSFieldsType) :: Fields
  129. TYPE(CMISSProblemType) :: Problem
  130. TYPE(CMISSRegionType) :: Region,WorldRegion
  131. TYPE(CMISSSolverType) :: Solver,LinearSolver
  132. TYPE(CMISSSolverEquationsType) :: SolverEquations
  133. #ifdef WIN32
  134. !Quickwin type
  135. LOGICAL :: QUICKWIN_STATUS=.FALSE.
  136. TYPE(WINDOWCONFIG) :: QUICKWIN_WINDOW_CONFIG
  137. #endif
  138. !Generic CMISS variables
  139. INTEGER(CMISSIntg) :: Err
  140. #ifdef WIN32
  141. !Initialise QuickWin
  142. QUICKWIN_WINDOW_CONFIG%TITLE="General Output" !Window title
  143. QUICKWIN_WINDOW_CONFIG%NUMTEXTROWS=-1 !Max possible number of rows
  144. QUICKWIN_WINDOW_CONFIG%MODE=QWIN$SCROLLDOWN
  145. !Set the window parameters
  146. QUICKWIN_STATUS=SETWINDOWCONFIG(QUICKWIN_WINDOW_CONFIG)
  147. !If attempt fails set with system estimated values
  148. IF(.NOT.QUICKWIN_STATUS) QUICKWIN_STATUS=SETWINDOWCONFIG(QUICKWIN_WINDOW_CONFIG)
  149. #endif
  150. !Intialise cmiss
  151. CALL CMISSInitialise(WorldCoordinateSystem,WorldRegion,Err)
  152. CALL CMISSErrorHandlingModeSet(CMISS_ERRORS_TRAP_ERROR,Err)
  153. WRITE(*,'(A)') "Program starting."
  154. !Set all diganostic levels on for testing
  155. CALL CMISSDiagnosticsSetOn(CMISS_FROM_DIAG_TYPE,(/1,2,3,4,5/),"Diagnostics",(/"PROBLEM_FINITE_ELEMENT_CALCULATE"/),Err)
  156. !Get the number of computational nodes and this computational node number
  157. CALL CMISSComputationalNumberOfNodesGet(NumberOfComputationalNodes,Err)
  158. CALL CMISSComputationalNodeNumberGet(ComputationalNodeNumber,Err)
  159. !Broadcast the number of elements in the X,Y and Z directions and the number of partitions to the other computational nodes
  160. ! CALL MPI_BCAST(NumberGlobalXElements,1,MPI_INTEGER,0,MPI_COMM_WORLD,MPI_IERROR)
  161. ! CALL MPI_BCAST(NumberGlobalYElements,1,MPI_INTEGER,0,MPI_COMM_WORLD,MPI_IERROR)
  162. ! CALL MPI_BCAST(NumberGlobalZElements,1,MPI_INTEGER,0,MPI_COMM_WORLD,MPI_IERROR)
  163. ! CALL MPI_BCAST(NumberOfDomains,1,MPI_INTEGER,0,MPI_COMM_WORLD,MPI_IERROR)
  164. NumberOfDomains=NumberOfComputationalNodes
  165. !Create a CS - default is 3D rectangular cartesian CS with 0,0,0 as origin
  166. CALL CMISSCoordinateSystem_Initialise(CoordinateSystem,Err)
  167. CALL CMISSCoordinateSystem_CreateStart(CoordinateSystemUserNumber,CoordinateSystem,Err)
  168. CALL CMISSCoordinateSystem_TypeSet(CoordinateSystem,CMISS_COORDINATE_RECTANGULAR_CARTESIAN_TYPE,Err)
  169. CALL CMISSCoordinateSystem_DimensionSet(CoordinateSystem,NumberOfSpatialCoordinates,Err)
  170. CALL CMISSCoordinateSystem_OriginSet(CoordinateSystem,(/0.0_CMISSDP,0.0_CMISSDP,0.0_CMISSDP/),Err)
  171. CALL CMISSCoordinateSystem_CreateFinish(CoordinateSystem,Err)
  172. !Create a region and assign the CS to the region
  173. CALL CMISSRegion_Initialise(Region,Err)
  174. CALL CMISSRegion_CreateStart(RegionUserNumber,WorldRegion,Region,Err)
  175. CALL CMISSRegion_CoordinateSystemSet(Region,CoordinateSystem,Err)
  176. CALL CMISSRegion_CreateFinish(Region,Err)
  177. !Define basis functions - tri-linear Lagrange and tri-Quadratic Lagrange, each with collapsed variant
  178. !Quadratic Basis
  179. CALL CMISSBasis_Initialise(QuadraticBasis,Err)
  180. CALL CMISSBasis_CreateStart(QuadraticBasisUserNumber,QuadraticBasis,Err)
  181. CALL CMISSBasis_InterpolationXiSet(QuadraticBasis,(/CMISS_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION, &
  182. & CMISS_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION,CMISS_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION/),Err)
  183. CALL CMISSBasis_QuadratureNumberOfGaussXiSet(QuadraticBasis, &
  184. & (/CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME/),Err)
  185. CALL CMISSBasis_QuadratureLocalFaceGaussEvaluateSet(QuadraticBasis,.true.,Err) !Have to do this
  186. CALL CMISSBasis_CreateFinish(QuadraticBasis,Err)
  187. !Collapsed Quadratic Basis
  188. CALL CMISSBasis_Initialise(QuadraticCollapsedBasis,Err)
  189. CALL CMISSBasis_CreateStart(QuadraticCollapsedBasisUserNumber,QuadraticCollapsedBasis,Err)
  190. CALL CMISSBasis_TypeSet(QuadraticCollapsedBasis,CMISS_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
  191. CALL CMISSBasis_NumberOfXiSet(QuadraticCollapsedBasis,NumberOfXiCoordinates,Err)
  192. CALL CMISSBasis_InterpolationXiSet(QuadraticCollapsedBasis,(/CMISS_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION, &
  193. & CMISS_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION,CMISS_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION/),Err)
  194. CALL CMISSBasis_CollapsedXiSet(QuadraticCollapsedBasis,(/CMISS_BASIS_XI_COLLAPSED, &
  195. & CMISS_BASIS_COLLAPSED_AT_XI0,CMISS_BASIS_NOT_COLLAPSED/),Err)
  196. CALL CMISSBasis_QuadratureNumberOfGaussXiSet(QuadraticCollapsedBasis, &
  197. & (/CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME/),Err)
  198. CALL CMISSBasis_QuadratureLocalFaceGaussEvaluateSet(QuadraticCollapsedBasis,.true.,Err) !Have to do this
  199. CALL CMISSBasis_CreateFinish(QuadraticCollapsedBasis,Err)
  200. !Linear Basis
  201. CALL CMISSBasis_Initialise(LinearBasis,Err)
  202. CALL CMISSBasis_CreateStart(LinearBasisUserNumber,LinearBasis,Err)
  203. CALL CMISSBasis_QuadratureNumberOfGaussXiSet(LinearBasis, &
  204. & (/CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME/),Err)
  205. CALL CMISSBasis_QuadratureLocalFaceGaussEvaluateSet(LinearBasis,.true.,Err) !Have to do this (unused) due to field_interp setup
  206. CALL CMISSBasis_CreateFinish(LinearBasis,Err)
  207. !Collapsed Linear Basis
  208. CALL CMISSBasis_Initialise(LinearCollapsedBasis,Err)
  209. CALL CMISSBasis_CreateStart(LinearCollapsedBasisUserNumber,LinearCollapsedBasis,Err)
  210. CALL CMISSBasis_TypeSet(LinearCollapsedBasis,CMISS_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
  211. CALL CMISSBasis_NumberOfXiSet(LinearCollapsedBasis,NumberOfXiCoordinates,Err)
  212. CALL CMISSBasis_InterpolationXiSet(LinearCollapsedBasis,(/CMISS_BASIS_LINEAR_LAGRANGE_INTERPOLATION, &
  213. & CMISS_BASIS_LINEAR_LAGRANGE_INTERPOLATION,CMISS_BASIS_LINEAR_LAGRANGE_INTERPOLATION/),Err)
  214. CALL CMISSBasis_CollapsedXiSet(LinearCollapsedBasis,(/CMISS_BASIS_XI_COLLAPSED,CMISS_BASIS_COLLAPSED_AT_XI0, &
  215. & CMISS_BASIS_NOT_COLLAPSED/),Err)
  216. CALL CMISSBasis_QuadratureNumberOfGaussXiSet(LinearCollapsedBasis, &
  217. & (/CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME,CMISS_BASIS_MID_QUADRATURE_SCHEME/),Err)
  218. CALL CMISSBasis_QuadratureLocalFaceGaussEvaluateSet(LinearCollapsedBasis,.true.,Err) !Have to do this (unused) due to field_interp setup
  219. CALL CMISSBasis_CreateFinish(LinearCollapsedBasis,Err)
  220. !Start the creation of a generated ellipsoid mesh
  221. CALL CMISSGeneratedMesh_Initialise(GeneratedMesh,Err)
  222. CALL CMISSGeneratedMesh_CreateStart(GeneratedMeshUserNumber,Region,GeneratedMesh,Err)
  223. !Set up an ellipsoid mesh
  224. CALL CMISSGeneratedMesh_TypeSet(GeneratedMesh,CMISS_GENERATED_MESH_ELLIPSOID_MESH_TYPE,Err)
  225. !Set the quadratic and linear bases
  226. CALL CMISSGeneratedMesh_BasisSet(GeneratedMesh,[QuadraticBasis,QuadraticCollapsedBasis,LinearBasis,LinearCollapsedBasis],Err)
  227. !Define the mesh on the region
  228. CALL CMISSGeneratedMesh_ExtentSet(GeneratedMesh,(/LONG_AXIS,SHORT_AXIS,WALL_THICKNESS,CUTOFF_ANGLE/),Err)
  229. CALL CMISSGeneratedMesh_NumberOfElementsSet(GeneratedMesh,(/NumberGlobalXElements,NumberGlobalYElements, &
  230. & NumberGlobalZElements/),Err)
  231. !Finish the creation of a generated mesh in the region
  232. CALL CMISSMesh_Initialise(Mesh,Err)
  233. CALL CMISSGeneratedMesh_CreateFinish(GeneratedMesh,MeshUserNumber,Mesh,Err)
  234. !Create a decomposition
  235. CALL CMISSDecomposition_Initialise(Decomposition,Err)
  236. CALL CMISSDecomposition_CreateStart(DecompositionUserNumber,Mesh,Decomposition,Err)
  237. CALL CMISSDecomposition_TypeSet(Decomposition,CMISS_DECOMPOSITION_CALCULATED_TYPE,Err)
  238. CALL CMISSDecomposition_NumberOfDomainsSet(Decomposition,NumberOfDomains,Err)
  239. CALL CMISSDecomposition_CalculateFacesSet(Decomposition,.TRUE.,Err)
  240. CALL CMISSDecomposition_CreateFinish(Decomposition,Err)
  241. !Create a field to put the geometry (default is geometry)
  242. CALL CMISSField_Initialise(GeometricField,Err)
  243. CALL CMISSField_CreateStart(FieldGeometryUserNumber,Region,GeometricField,Err)
  244. CALL CMISSField_MeshDecompositionSet(GeometricField,Decomposition,Err)
  245. CALL CMISSField_TypeSet(GeometricField,CMISS_FIELD_GEOMETRIC_TYPE,Err)
  246. CALL CMISSField_NumberOfVariablesSet(GeometricField,FieldGeometryNumberOfVariables,Err)
  247. CALL CMISSField_NumberOfComponentsSet(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,FieldGeometryNumberOfComponents,Err)
  248. CALL CMISSField_ComponentMeshComponentSet(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,1,QuadraticMeshComponentNumber,Err)
  249. CALL CMISSField_ComponentMeshComponentSet(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,2,QuadraticMeshComponentNumber,Err)
  250. CALL CMISSField_ComponentMeshComponentSet(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,3,QuadraticMeshComponentNumber,Err)
  251. CALL CMISSField_CreateFinish(GeometricField,Err)
  252. !Update the geometric field parameters
  253. CALL CMISSGeneratedMesh_GeometricParametersCalculate(GeneratedMesh,GeometricField,Err)
  254. !Create a fibre field and attach it to the geometric field
  255. CALL CMISSField_Initialise(FibreField,Err)
  256. CALL CMISSField_CreateStart(FieldFibreUserNumber,Region,FibreField,Err)
  257. CALL CMISSField_TypeSet(FibreField,CMISS_FIELD_FIBRE_TYPE,Err)
  258. CALL CMISSField_MeshDecompositionSet(FibreField,Decomposition,Err)
  259. CALL CMISSField_GeometricFieldSet(FibreField,GeometricField,Err)
  260. CALL CMISSField_NumberOfVariablesSet(FibreField,FieldFibreNumberOfVariables,Err)
  261. CALL CMISSField_NumberOfComponentsSet(FibreField,CMISS_FIELD_U_VARIABLE_TYPE,FieldFibreNumberOfComponents,Err)
  262. CALL CMISSField_ComponentMeshComponentSet(FibreField,CMISS_FIELD_U_VARIABLE_TYPE,1,QuadraticMeshComponentNumber,Err)
  263. CALL CMISSField_ComponentMeshComponentSet(FibreField,CMISS_FIELD_U_VARIABLE_TYPE,2,QuadraticMeshComponentNumber,Err)
  264. CALL CMISSField_ComponentMeshComponentSet(FibreField,CMISS_FIELD_U_VARIABLE_TYPE,3,QuadraticMeshComponentNumber,Err)
  265. CALL CMISSField_CreateFinish(FibreField,Err)
  266. !Set Fibre directions (this block is parallel-untested)
  267. node_idx=0
  268. !This is valid only for quadratic basis functions
  269. TOTAL_NUMBER_NODES_XI(1)=NumberGlobalXElements*2
  270. TOTAL_NUMBER_NODES_XI(2)=NumberGlobalYElements*2+1
  271. TOTAL_NUMBER_NODES_XI(3)=NumberGlobalZElements*2+1
  272. XI2delta=(PI-CUTOFF_ANGLE)/(TOTAL_NUMBER_NODES_XI(2)-1)
  273. XI3=0
  274. XI3delta=(1.0)/(TOTAL_NUMBER_NODES_XI(3)-1)
  275. zero=0
  276. DO k=1, TOTAL_NUMBER_NODES_XI(3)
  277. !Apex nodes
  278. j=1
  279. i=1
  280. node_idx=node_idx+1
  281. CALL CMISSDecomposition_NodeDomainGet(Decomposition,node_idx,1,NodeDomain,Err)
  282. IF(NodeDomain==ComputationalNodeNumber) THEN
  283. FibreFieldAngle=(/zero,zero,zero/)
  284. DO component_idx=1,FieldFibreNumberOfComponents
  285. CALL CMISSField_ParameterSetUpdateNode(FibreField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,1, &
  286. & DerivativeUserNumber, &
  287. & node_idx,component_idx,FibreFieldAngle(component_idx),Err)
  288. ENDDO
  289. ENDIF
  290. theta=atan(FIBRE_SLOPE_CHANGE*XI3+FIBRE_SLOPE_INTERSECTION)
  291. DO j=2, TOTAL_NUMBER_NODES_XI(2)
  292. nu=PI-XI2delta*(j-1)
  293. omega=PI/2+cos(2*nu)*atan(SHEET_SLOPE_BASE_ENDO)*(-2*XI3+1)
  294. DO i=1, TOTAL_NUMBER_NODES_XI(1)
  295. node_idx=node_idx+1
  296. CALL CMISSDecomposition_NodeDomainGet(Decomposition,node_idx,1,NodeDomain,Err)
  297. IF(NodeDomain==ComputationalNodeNumber) THEN
  298. FibreFieldAngle=(/theta,zero,omega/)
  299. DO component_idx=1,FieldFibreNumberOfComponents
  300. CALL CMISSField_ParameterSetUpdateNode(FibreField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE, &
  301. & 1,DerivativeUserNumber, node_idx,component_idx,FibreFieldAngle(component_idx),Err)
  302. ENDDO
  303. ENDIF
  304. ENDDO
  305. ENDDO
  306. XI3=XI3+XI3delta
  307. ENDDO
  308. !Create a material field and attach it to the geometric field
  309. CALL CMISSField_Initialise(MaterialField,Err)
  310. CALL CMISSField_CreateStart(FieldMaterialUserNumber,Region,MaterialField,Err)
  311. CALL CMISSField_TypeSet(MaterialField,CMISS_FIELD_MATERIAL_TYPE,Err)
  312. CALL CMISSField_MeshDecompositionSet(MaterialField,Decomposition,Err)
  313. CALL CMISSField_GeometricFieldSet(MaterialField,GeometricField,Err)
  314. CALL CMISSField_NumberOfVariablesSet(MaterialField,FieldMaterialNumberOfVariables,Err)
  315. CALL CMISSField_NumberOfComponentsSet(MaterialField,CMISS_FIELD_U_VARIABLE_TYPE,FieldMaterialNumberOfComponents,Err)
  316. CALL CMISSField_ComponentInterpolationSet(MaterialField,CMISS_FIELD_U_VARIABLE_TYPE,1,CMISS_FIELD_CONSTANT_INTERPOLATION,Err)
  317. CALL CMISSField_ComponentInterpolationSet(MaterialField,CMISS_FIELD_U_VARIABLE_TYPE,2,CMISS_FIELD_CONSTANT_INTERPOLATION,Err)
  318. CALL CMISSField_CreateFinish(MaterialField,Err)
  319. !Set Mooney-Rivlin constants c10 and c01 to 2.0 and 6.0 respectively.
  320. CALL CMISSField_ComponentValuesInitialise(MaterialField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,1,2.0_CMISSDP,Err)
  321. CALL CMISSField_ComponentValuesInitialise(MaterialField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,2,6.0_CMISSDP,Err)
  322. !Create the equations_set
  323. CALL CMISSField_Initialise(EquationsSetField,Err)
  324. CALL CMISSEquationsSet_Initialise(EquationsSet,Err)
  325. CALL CMISSEquationsSet_CreateStart(EquationSetUserNumber,Region,FibreField,CMISS_EQUATIONS_SET_ELASTICITY_CLASS, &
  326. & CMISS_EQUATIONS_SET_FINITE_ELASTICITY_TYPE,CMISS_EQUATIONS_SET_NO_SUBTYPE,EquationsSetFieldUserNumber,&
  327. & EquationsSetField,EquationsSet,Err)
  328. ! CMISS_EQUATIONS_SET_ORTHOTROPIC_MATERIAL_COSTA_SUBTYPE
  329. CALL CMISSEquationsSet_CreateFinish(EquationsSet,Err)
  330. !Create the dependent field with 2 variables and 4 components (3 displacement, 1 pressure)
  331. CALL CMISSField_Initialise(DependentField,Err)
  332. CALL CMISSField_CreateStart(FieldDependentUserNumber,Region,DependentField,Err)
  333. CALL CMISSField_TypeSet(DependentField,CMISS_FIELD_GENERAL_TYPE,Err)
  334. CALL CMISSField_MeshDecompositionSet(DependentField,Decomposition,Err)
  335. CALL CMISSField_GeometricFieldSet(DependentField,GeometricField,Err)
  336. CALL CMISSField_DependentTypeSet(DependentField,CMISS_FIELD_DEPENDENT_TYPE,Err)
  337. CALL CMISSField_NumberOfVariablesSet(DependentField,FieldDependentNumberOfVariables,Err)
  338. CALL CMISSField_NumberOfComponentsSet(DependentField,CMISS_FIELD_U_VARIABLE_TYPE,FieldDependentNumberOfComponents,Err)
  339. CALL CMISSField_NumberOfComponentsSet(DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,FieldDependentNumberOfComponents,Err)
  340. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_U_VARIABLE_TYPE,1,QuadraticMeshComponentNumber,Err)
  341. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_U_VARIABLE_TYPE,2,QuadraticMeshComponentNumber,Err)
  342. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_U_VARIABLE_TYPE,3,QuadraticMeshComponentNumber,Err)
  343. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_U_VARIABLE_TYPE,4,LinearMeshComponentNumber,Err)
  344. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,1,QuadraticMeshComponentNumber,Err)
  345. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,2,QuadraticMeshComponentNumber,Err)
  346. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,3,QuadraticMeshComponentNumber,Err)
  347. CALL CMISSField_ComponentMeshComponentSet(DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,4,LinearMeshComponentNumber,Err)
  348. CALL CMISSField_ScalingTypeSet(DependentField,CMISS_FIELD_UNIT_SCALING,Err)
  349. CALL CMISSField_CreateFinish(DependentField,Err)
  350. CALL CMISSEquationsSet_DependentCreateStart(EquationsSet,FieldDependentUserNumber,DependentField,Err)
  351. CALL CMISSEquationsSet_DependentCreateFinish(EquationsSet,Err)
  352. CALL CMISSEquationsSet_MaterialsCreateStart(EquationsSet,FieldMaterialUserNumber,MaterialField,Err)
  353. CALL CMISSEquationsSet_MaterialsCreateFinish(EquationsSet,Err)
  354. !Create the equations set equations
  355. CALL CMISSEquations_Initialise(Equations,Err)
  356. CALL CMISSEquationsSet_EquationsCreateStart(EquationsSet,Equations,Err)
  357. CALL CMISSEquations_SparsityTypeSet(Equations,CMISS_EQUATIONS_SPARSE_MATRICES,Err)
  358. CALL CMISSEquations_OutputTypeSet(Equations,CMISS_EQUATIONS_NO_OUTPUT,Err)
  359. CALL CMISSEquationsSet_EquationsCreateFinish(EquationsSet,Err)
  360. !Initialise dependent field from undeformed geometry and displacement bcs and set hydrostatic pressure
  361. CALL CMISSField_ParametersToFieldParametersComponentCopy(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE, &
  362. & 1,DependentField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,1,Err)
  363. CALL CMISSField_ParametersToFieldParametersComponentCopy(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE, &
  364. & 2,DependentField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,2,Err)
  365. CALL CMISSField_ParametersToFieldParametersComponentCopy(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE, &
  366. & 3,DependentField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,3,Err)
  367. CALL CMISSField_ComponentValuesInitialise(DependentField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,4, &
  368. & -14.0_CMISSDP, &
  369. & Err)
  370. !Define the problem
  371. CALL CMISSProblem_Initialise(Problem,Err)
  372. CALL CMISSProblem_CreateStart(ProblemUserNumber,Problem,Err)
  373. CALL CMISSProblem_SpecificationSet(Problem,CMISS_PROBLEM_ELASTICITY_CLASS,CMISS_PROBLEM_FINITE_ELASTICITY_TYPE, &
  374. & CMISS_PROBLEM_NO_SUBTYPE,Err)
  375. CALL CMISSProblem_CreateFinish(Problem,Err)
  376. !Create the problem control loop
  377. CALL CMISSProblem_ControlLoopCreateStart(Problem,Err)
  378. CALL CMISSProblem_ControlLoopCreateFinish(Problem,Err)
  379. !Create the problem solvers
  380. CALL CMISSSolver_Initialise(Solver,Err)
  381. CALL CMISSSolver_Initialise(LinearSolver,Err)
  382. CALL CMISSProblem_SolversCreateStart(Problem,Err)
  383. CALL CMISSProblem_SolverGet(Problem,CMISS_CONTROL_LOOP_NODE,1,Solver,Err)
  384. CALL CMISSSolver_OutputTypeSet(Solver,CMISS_SOLVER_PROGRESS_OUTPUT,Err)
  385. !CALL CMISSSolver_NewtonJacobianCalculationTypeSet(Solver,CMISS_SOLVER_NEWTON_JACOBIAN_FD_CALCULATED,Err)
  386. CALL CMISSSolver_NewtonJacobianCalculationTypeSet(Solver,CMISS_SOLVER_NEWTON_JACOBIAN_EQUATIONS_CALCULATED,Err)
  387. CALL CMISSSolver_NewtonLinearSolverGet(Solver,LinearSolver,Err)
  388. CALL CMISSSolver_LinearTypeSet(LinearSolver,CMISS_SOLVER_LINEAR_DIRECT_SOLVE_TYPE,Err)
  389. CALL CMISSProblem_SolversCreateFinish(Problem,Err)
  390. !Create the problem solver equations
  391. CALL CMISSSolver_Initialise(Solver,Err)
  392. CALL CMISSSolverEquations_Initialise(SolverEquations,Err)
  393. CALL CMISSProblem_SolverEquationsCreateStart(Problem,Err)
  394. CALL CMISSProblem_SolverGet(Problem,CMISS_CONTROL_LOOP_NODE,1,Solver,Err)
  395. CALL CMISSSolver_SolverEquationsGet(Solver,SolverEquations,Err)
  396. CALL CMISSSolverEquations_SparsityTypeSet(SolverEquations,CMISS_SOLVER_SPARSE_MATRICES,Err)
  397. CALL CMISSSolverEquations_EquationsSetAdd(SolverEquations,EquationsSet,EquationsSetIndex,Err)
  398. CALL CMISSProblem_SolverEquationsCreateFinish(Problem,Err)
  399. !Prescribe boundary conditions (absolute nodal parameters)
  400. CALL CMISSBoundaryConditions_Initialise(BoundaryConditions,Err)
  401. CALL CMISSSolverEquations_BoundaryConditionsCreateStart(SolverEquations,BoundaryConditions,Err)
  402. !Grab the list of nodes on inner, outer and top surfaces
  403. CALL CMISSGeneratedMesh_SurfaceGet(GeneratedMesh,CMISS_GENERATED_MESH_ELLIPSOID_TOP_SURFACE,TopSurfaceNodes,TopNormalXi,Err)
  404. CALL CMISSGeneratedMesh_SurfaceGet(GeneratedMesh,CMISS_GENERATED_MESH_ELLIPSOID_INNER_SURFACE,InnerSurfaceNodes,InnerNormalXi,Err)
  405. CALL CMISSGeneratedMesh_SurfaceGet(GeneratedMesh,CMISS_GENERATED_MESH_ELLIPSOID_OUTER_SURFACE,OuterSurfaceNodes,OuterNormalXi,Err)
  406. ! ASSIGN BOUNDARY CONDITIONS
  407. !Fix base of the ellipsoid in z direction
  408. DO NN=1,SIZE(TopSurfaceNodes,1)
  409. NODE=TopSurfaceNodes(NN)
  410. CALL CMISSDecomposition_NodeDomainGet(Decomposition,NODE,1,NodeDomain,Err)
  411. IF(NodeDomain==ComputationalNodeNumber) THEN
  412. CALL CMISSField_ParameterSetGetNode(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,1,1,NODE,3, &
  413. & ZCoord, &
  414. & Err)
  415. CALL CMISSBoundaryConditions_SetNode(BoundaryConditions,DependentField,CMISS_FIELD_U_VARIABLE_TYPE,1,1,NODE,3, &
  416. & CMISS_BOUNDARY_CONDITION_FIXED,ZCoord,Err)
  417. ENDIF
  418. ENDDO
  419. !Apply inner surface pressure
  420. !NOTE: Surface pressure goes into pressure_values_set_type of the DELUDELN type
  421. DO NN=1,SIZE(InnerSurfaceNodes,1)
  422. NODE=InnerSurfaceNodes(NN)
  423. CALL CMISSDecomposition_NodeDomainGet(Decomposition,NODE,1,NodeDomain,Err)
  424. IF(NodeDomain==ComputationalNodeNumber) THEN
  425. CALL CMISSBoundaryConditions_SetNode(BoundaryConditions,DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,1,1,NODE, &
  426. & ABS(InnerNormalXi), &
  427. & CMISS_BOUNDARY_CONDITION_PRESSURE,INNER_PRESSURE,Err)
  428. ENDIF
  429. ENDDO
  430. !Apply outer surface pressure
  431. DO NN=1,SIZE(OuterSurfaceNodes,1)
  432. NODE=OuterSurfaceNodes(NN)
  433. CALL CMISSDecomposition_NodeDomainGet(Decomposition,NODE,1,NodeDomain,Err)
  434. IF(NodeDomain==ComputationalNodeNumber) THEN
  435. CALL CMISSBoundaryConditions_SetNode(BoundaryConditions,DependentField,CMISS_FIELD_DELUDELN_VARIABLE_TYPE,1,1,NODE, &
  436. & ABS(OuterNormalXi), &
  437. & CMISS_BOUNDARY_CONDITION_PRESSURE,OUTER_PRESSURE,Err)
  438. ENDIF
  439. ENDDO
  440. !Fix more nodes at the base to stop free body motion
  441. X_FIXED=.FALSE.
  442. Y_FIXED=.FALSE.
  443. DO NN=1,SIZE(TopSurfaceNodes,1)
  444. NODE=TopSurfaceNodes(NN)
  445. CALL CMISSDecomposition_NodeDomainGet(Decomposition,NODE,1,NodeDomain,Err)
  446. IF(NodeDomain==ComputationalNodeNumber) THEN
  447. CALL CMISSField_ParameterSetGetNode(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,1,1,NODE,1, &
  448. & XCoord, &
  449. & Err)
  450. CALL CMISSField_ParameterSetGetNode(GeometricField,CMISS_FIELD_U_VARIABLE_TYPE,CMISS_FIELD_VALUES_SET_TYPE,1,1,NODE,2, &
  451. & YCoord, &
  452. & Err)
  453. IF(ABS(XCoord)<1.0E-6_CMISSDP) THEN
  454. CALL CMISSBoundaryConditions_SetNode(BoundaryConditions,DependentField,CMISS_FIELD_U_VARIABLE_TYPE,1,1,NODE,1, &
  455. & CMISS_BOUNDARY_CONDITION_FIXED,XCoord,Err)
  456. WRITE(*,*) "FIXING NODE",NODE,"IN X DIRECTION"
  457. X_FIXED=.TRUE.
  458. ENDIF
  459. IF(ABS(YCoord)<1.0E-6_CMISSDP) THEN
  460. CALL CMISSBoundaryConditions_SetNode(BoundaryConditions,DependentField,CMISS_FIELD_U_VARIABLE_TYPE,1,1,NODE,2, &
  461. & CMISS_BOUNDARY_CONDITION_FIXED,YCoord,Err)
  462. WRITE(*,*) "FIXING NODE",NODE,"IN Y DIRECTION"
  463. Y_FIXED=.TRUE.
  464. ENDIF
  465. ENDIF
  466. ENDDO
  467. CALL MPI_REDUCE(X_FIXED,X_OKAY,1,MPI_LOGICAL,MPI_LOR,0,MPI_COMM_WORLD,MPI_IERROR)
  468. CALL MPI_REDUCE(Y_FIXED,Y_OKAY,1,MPI_LOGICAL,MPI_LOR,0,MPI_COMM_WORLD,MPI_IERROR)
  469. IF(ComputationalNodeNumber==0) THEN
  470. IF(.NOT.(X_OKAY.AND.Y_OKAY)) THEN
  471. WRITE(*,*) "Free body motion could not be prevented!"
  472. CALL CMISSFinalise(Err)
  473. STOP
  474. ENDIF
  475. ENDIF
  476. CALL CMISSSolverEquations_BoundaryConditionsCreateFinish(SolverEquations,Err)
  477. !Solve problem
  478. CALL CMISSProblem_Solve(Problem,Err)
  479. !Output solution
  480. CALL CMISSFields_Initialise(Fields,Err)
  481. CALL CMISSFields_Create(Region,Fields,Err)
  482. CALL CMISSFields_NodesExport(Fields,"QuadraticEllipsoid","FORTRAN",Err)
  483. CALL CMISSFields_ElementsExport(Fields,"QuadraticEllipsoid","FORTRAN",Err)
  484. CALL CMISSFields_Finalise(Fields,Err)
  485. CALL CMISSFinalise(Err)
  486. WRITE(*,'(A)') "Program successfully completed."
  487. STOP
  488. END PROGRAM QUADRATICELLIPSOIDEEXAMPLE