/matlab_tools/Converted/kBlobIt.m

%kBlobIt 'converts 3D data into blob-File to include in povray '
% This MatLab function was automatically generated by a converter (KhorosToMatLab) from the Khoros BlobIt.pane file
%
% Parameters: 
% Double: t 'Threshhold', default: 100: 'threshhold for blobbing data'
% Toggle: rel 'relative', default: 0: 'Threshhold given in Percent of 0 .. Maximum'
% Toggle: v 'Input is Vector file', default: 0: 'input is in vector format'
% Toggle: noblob 'NoBlob', default: 0: 'do not generate blobs but ordenary spheres'
% Toggle: polycol 'PolyCol', default: 0: 'for vestors generate a new color at each new vector'
% Double: dx 'VecSizeX', default: 64: 'Size of Datacube to show in case of vector file usage'
% Double: dy 'Y', default: 64: 'Size of Datacube to show in case of vector file usage'
% Double: dz 'Z', default: 64: 'Size of Datacube to show in case of vector file usage'
% String: titX 'TitleX', default: 'X-axis': 'Text for Axis Title'
% String: titY 'Y', default: 'Y-axis': 'Text for Axis Title'
% String: titZ 'Z', default: 'Z-axis': 'Text for Axis Title'
% Integer: sb 'ScaleBar Units', default: 2000: 'Number of basic units to form length of scalebar'
% String: unit 'Text', default: '2\mm': 'Text to write at Scale Bar'
% Toggle: vrml 'Generate VRML', default: 0: 'generate vrml instaed of povray format'
% Toggle: faces 'Generate Faces', default: 0: 'generate only faces and no cubes'
% Toggle: nospix 'no subpixel approximations', default: 0: 'do only use full integer pixel coordinates'
% Double: smoothfac 'Smoothing', default: 2.5: 'this factor can be adjusted for optimal smoothing'
% Double: pixXY 'Voxelsize XY', default: 77.8: 'Size of a voxel in nm XY-direction'
% Double: zoom 'Zoom', default: 1: 'Zooms every coordinate'
% Double: sr 'Sphere Radius', default: 2.2: 'Radius of blobs'
% Double: pixZ 'Voxelsize Z', default: 162.1: 'Size of a voxel in nm Z-direction'
% Double: mx 'Midpoint X', default: 0.5: 'view is centered on this point'
% Double: my 'Y', default: 0.5: 'view is centered on this point'
% Double: mz 'Z', default: 0.5: 'view is centered on this point'
% InputFile: i 'Input ', required: 'First Input data object'
% OutputFile: ao 'OutputBlobFile', required: 'Resulting ascii output data object'
% InputFile: bf 'StartFile', optional: 'Povray file for the start declarations'
% InputFile: tf 'Texture-File-Begin', optional: 'Filename will be +#Elem.txb and +#Elem.txe'
% InputFile: ef 'EndFile', optional: 'File to be included at the end'
%
% Example: ao = kBlobIt({i, bf, tf, ef}, {'t',100;'rel',0;'v',0;'noblob',0;'polycol',0;'dx',64;'dy',64;'dz',64;'titX','X-axis';'titY','Y-axis';'titZ','Z-axis';'sb',2000;'unit','2\mm';'vrml',0;'faces',0;'nospix',0;'smoothfac',2.5;'pixXY',77.8;'zoom',1;'sr',2.2;'pixZ',162.1;'mx',0.5;'my',0.5;'mz',0.5;'i','';'ao','';'bf','';'tf','';'ef',''})
%
% Khoros helpfile follows below:
%
%  PROGRAM
% BlobIt - converts 3D data into blob-File to include in povray
%
%  DESCRIPTION
%
%  
%
%  EXAMPLES
%
%  "SEE ALSO"
%
%  RESTRICTIONS 
%
%  REFERENCES 
%
%  COPYRIGHT
% Copyright (C) 1996-2003, Rainer Heintzmann,  All rights reserved.
% 


function varargout = kBlobIt(varargin)
if nargin ==0
  Inputs={};arglist={'',''};
elseif nargin ==1
  Inputs=varargin{1};arglist={'',''};
elseif nargin ==2
  Inputs=varargin{1}; arglist=varargin{2};
else error('Usage: [out1,..] = kBlobIt(Inputs,arglist).');
end
if size(arglist,2)~=2
  error('arglist must be of form {''ParameterTag1'',value1;''ParameterTag2'',value2}')
 end
narglist={'t', 100;'rel', 0;'v', 0;'noblob', 0;'polycol', 0;'dx', 64;'dy', 64;'dz', 64;'titX', 'X-axis';'titY', 'Y-axis';'titZ', 'Z-axis';'sb', 2000;'unit', '2\mm';'vrml', 0;'faces', 0;'nospix', 0;'smoothfac', 2.5;'pixXY', 77.8;'zoom', 1;'sr', 2.2;'pixZ', 162.1;'mx', 0.5;'my', 0.5;'mz', 0.5;'i', '__input';'ao', '__output';'bf', '__input';'tf', '__input';'ef', '__input'};
maxval={0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,1,1,1};
minval={0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,1,1,1};
istoggle=[0,1,1,1,1,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0,0,0,0,1,1,1];
was_set=istoggle * 0;
paramtype={'Double','Toggle','Toggle','Toggle','Toggle','Double','Double','Double','String','String','String','Integer','String','Toggle','Toggle','Toggle','Double','Double','Double','Double','Double','Double','Double','Double','InputFile','OutputFile','InputFile','InputFile','InputFile'};
% identify the input arrays and assign them to the arguments as stated by the user
if ~iscell(Inputs)
Inputs = {Inputs};
end
NumReqOutputs=1; nextinput=1; nextoutput=1;
  for ii=1:size(arglist,1)
  wasmatched=0;
  for jj=1:size(narglist,1)
   if strcmp(arglist{ii,1},narglist{jj,1})  % a given argument was matched to the possible arguments
     wasmatched = 1;
     was_set(jj) = 1;
     if strcmp(narglist{jj,2}, '__input')
      if (nextinput > length(Inputs)) 
        error(['Input ' narglist{jj,1} ' has no corresponding input!']); 
      end
      narglist{jj,2} = 'OK_in';
      nextinput = nextinput + 1;
     elseif strcmp(narglist{jj,2}, '__output')
      if (nextoutput > nargout) 
        error(['Output nr. ' narglist{jj,1} ' is not present in the assignment list of outputs !']); 
      end
      if (isempty(arglist{ii,2}))
        narglist{jj,2} = 'OK_out';
      else
        narglist{jj,2} = arglist{ii,2};
      end

      nextoutput = nextoutput + 1;
      if (minval{jj} == 0)  
         NumReqOutputs = NumReqOutputs - 1;
      end
     elseif isstr(arglist{ii,2})
      narglist{jj,2} = arglist{ii,2};
     else
        if strcmp(paramtype{jj}, 'Integer') & (round(arglist{ii,2}) ~= arglist{ii,2})
            error(['Argument ' arglist{ii,1} ' is of integer type but non-integer number ' arglist{ii,2} ' was supplied']);
        end
        if (minval{jj} ~= 0 | maxval{jj} ~= 0)
          if (minval{jj} == 1 & maxval{jj} == 1 & arglist{ii,2} < 0)
            error(['Argument ' arglist{ii,1} ' must be bigger or equal to zero!']);
          elseif (minval{jj} == -1 & maxval{jj} == -1 & arglist{ii,2} > 0)
            error(['Argument ' arglist{ii,1} ' must be smaller or equal to zero!']);
          elseif (minval{jj} == 2 & maxval{jj} == 2 & arglist{ii,2} <= 0)
            error(['Argument ' arglist{ii,1} ' must be bigger than zero!']);
          elseif (minval{jj} == -2 & maxval{jj} == -2 & arglist{ii,2} >= 0)
            error(['Argument ' arglist{ii,1} ' must be smaller than zero!']);
          elseif (minval{jj} ~= maxval{jj} & arglist{ii,2} < minval{jj})
            error(['Argument ' arglist{ii,1} ' must be bigger than ' num2str(minval{jj})]);
          elseif (minval{jj} ~= maxval{jj} & arglist{ii,2} > maxval{jj})
            error(['Argument ' arglist{ii,1} ' must be smaller than ' num2str(maxval{jj})]);
          end
        end
     end
     if ~strcmp(narglist{jj,2},'OK_out') &  ~strcmp(narglist{jj,2},'OK_in') 
       narglist{jj,2} = arglist{ii,2};
     end
   end
   end
   if (wasmatched == 0 & ~strcmp(arglist{ii,1},''))
        error(['Argument ' arglist{ii,1} ' is not a valid argument for this function']);
   end
end
% match the remaining inputs/outputs to the unused arguments and test for missing required inputs
 for jj=1:size(narglist,1)
     if  strcmp(paramtype{jj}, 'Toggle')
        if (narglist{jj,2} ==0)
          narglist{jj,1} = ''; 
        end;
        narglist{jj,2} = ''; 
     end;
     if  ~strcmp(narglist{jj,2},'__input') && ~strcmp(narglist{jj,2},'__output') && istoggle(jj) && ~ was_set(jj)
          narglist{jj,1} = ''; 
          narglist{jj,2} = ''; 
     end;
     if strcmp(narglist{jj,2}, '__input')
      if (minval{jj} == 0)  % meaning this input is required
        if (nextinput > size(Inputs)) 
           error(['Required input ' narglist{jj,1} ' has no corresponding input in the list!']); 
        else
          narglist{jj,2} = 'OK_in';
          nextinput = nextinput + 1;
        end
      else  % this is an optional input
        if (nextinput <= length(Inputs)) 
          narglist{jj,2} = 'OK_in';
          nextinput = nextinput + 1;
        else 
          narglist{jj,1} = '';
          narglist{jj,2} = '';
        end;
      end;
     else 
     if strcmp(narglist{jj,2}, '__output')
      if (minval{jj} == 0) % this is a required output
        if (nextoutput > nargout & nargout > 1) 
           error(['Required output ' narglist{jj,1} ' is not stated in the assignment list!']); 
        else
          narglist{jj,2} = 'OK_out';
          nextoutput = nextoutput + 1;
          NumReqOutputs = NumReqOutputs-1;
        end
      else % this is an optional output
        if (nargout - nextoutput >= NumReqOutputs) 
          narglist{jj,2} = 'OK_out';
          nextoutput = nextoutput + 1;
        else 
          narglist{jj,1} = '';
          narglist{jj,2} = '';
        end;
      end
     end
  end
end
if nargout
   varargout = cell(1,nargout);
else
  varargout = cell(1,1);
end
global KhorosRoot
if exist('KhorosRoot') && ~isempty(KhorosRoot)
w=['"' KhorosRoot];
else
if ispc
  w='"C:\Program Files\dip\khorosBin\';
else
[s,w] = system('which cantata');
w=['"' w(1:end-8)];
end
end
[varargout{:}]=callKhoros([w 'blobit"  -k'],Inputs,narglist);