/unicycler/include/minimap/ksort.h

https://github.com/rrwick/Unicycler · C Header · 159 lines · 121 code · 13 blank · 25 comment · 55 complexity · 73aa1c60ed321587b1b307a2320d1d70 MD5 · raw file

  1. /* The MIT License
  2. Copyright (c) 2008, 2011 Attractive Chaos <attractor@live.co.uk>
  3. Permission is hereby granted, free of charge, to any person obtaining
  4. a copy of this software and associated documentation files (the
  5. "Software"), to deal in the Software without restriction, including
  6. without limitation the rights to use, copy, modify, merge, publish,
  7. distribute, sublicense, and/or sell copies of the Software, and to
  8. permit persons to whom the Software is furnished to do so, subject to
  9. the following conditions:
  10. The above copyright notice and this permission notice shall be
  11. included in all copies or substantial portions of the Software.
  12. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
  13. EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
  14. MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
  15. NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
  16. BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
  17. ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
  18. CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
  19. SOFTWARE.
  20. */
  21. // This is a simplified version of ksort.h
  22. #ifndef AC_KSORT_H
  23. #define AC_KSORT_H
  24. #include <stdlib.h>
  25. #include <string.h>
  26. typedef struct {
  27. void *left, *right;
  28. int depth;
  29. } ks_isort_stack_t;
  30. #define KSORT_SWAP(type_t, a, b) { register type_t t=(a); (a)=(b); (b)=t; }
  31. #define KSORT_INIT(name, type_t, __sort_lt) \
  32. size_t ks_lis_##name(size_t n, const type_t *a, size_t *b, size_t *_p) \
  33. { /* translated from: http://www.algorithmist.com/index.php/Longest_Increasing_Subsequence.cpp */ \
  34. size_t i, u, v, *top = b, *p; \
  35. if (n == 0) return 0; \
  36. p = _p? _p : (size_t*)calloc(n, sizeof(size_t)); \
  37. *top++ = 0; \
  38. for (i = 1; i < n; i++) { \
  39. if (__sort_lt(a[*(top-1)], a[i])) { \
  40. p[i] = *(top-1); \
  41. *top++ = i; \
  42. continue; \
  43. } \
  44. for (u = 0, v = top - b - 1; u < v;) { \
  45. size_t c = (u + v) >> 1; \
  46. if (__sort_lt(a[b[c]], a[i])) u = c + 1; \
  47. else v = c; \
  48. } \
  49. if (__sort_lt(a[i], a[b[u]])) { \
  50. if (u > 0) p[i] = b[u-1]; \
  51. b[u] = i; \
  52. } \
  53. } \
  54. for (u = top - b, v = *(top-1); u--; v = p[v]) b[u] = v; \
  55. if (!_p) free(p); \
  56. return top - b; \
  57. } \
  58. type_t ks_ksmall_##name(size_t n, type_t arr[], size_t kk) \
  59. { \
  60. type_t *low, *high, *k, *ll, *hh, *mid; \
  61. low = arr; high = arr + n - 1; k = arr + kk; \
  62. for (;;) { \
  63. if (high <= low) return *k; \
  64. if (high == low + 1) { \
  65. if (__sort_lt(*high, *low)) KSORT_SWAP(type_t, *low, *high); \
  66. return *k; \
  67. } \
  68. mid = low + (high - low) / 2; \
  69. if (__sort_lt(*high, *mid)) KSORT_SWAP(type_t, *mid, *high); \
  70. if (__sort_lt(*high, *low)) KSORT_SWAP(type_t, *low, *high); \
  71. if (__sort_lt(*low, *mid)) KSORT_SWAP(type_t, *mid, *low); \
  72. KSORT_SWAP(type_t, *mid, *(low+1)); \
  73. ll = low + 1; hh = high; \
  74. for (;;) { \
  75. do ++ll; while (__sort_lt(*ll, *low)); \
  76. do --hh; while (__sort_lt(*low, *hh)); \
  77. if (hh < ll) break; \
  78. KSORT_SWAP(type_t, *ll, *hh); \
  79. } \
  80. KSORT_SWAP(type_t, *low, *hh); \
  81. if (hh <= k) low = ll; \
  82. if (hh >= k) high = hh - 1; \
  83. } \
  84. } \
  85. #define ks_ksmall(name, n, a, k) ks_ksmall_##name(n, a, k)
  86. #define ks_lt_generic(a, b) ((a) < (b))
  87. #define ks_lt_str(a, b) (strcmp((a), (b)) < 0)
  88. typedef const char *ksstr_t;
  89. #define KSORT_INIT_GENERIC(type_t) KSORT_INIT(type_t, type_t, ks_lt_generic)
  90. #define KSORT_INIT_STR KSORT_INIT(str, ksstr_t, ks_lt_str)
  91. #define RS_MIN_SIZE 64
  92. #define KRADIX_SORT_INIT(name, rstype_t, rskey, sizeof_key) \
  93. typedef struct { \
  94. rstype_t *b, *e; \
  95. } rsbucket_##name##_t; \
  96. void rs_insertsort_##name(rstype_t *beg, rstype_t *end) \
  97. { \
  98. rstype_t *i; \
  99. for (i = beg + 1; i < end; ++i) \
  100. if (rskey(*i) < rskey(*(i - 1))) { \
  101. rstype_t *j, tmp = *i; \
  102. for (j = i; j > beg && rskey(tmp) < rskey(*(j-1)); --j) \
  103. *j = *(j - 1); \
  104. *j = tmp; \
  105. } \
  106. } \
  107. void rs_sort_##name(rstype_t *beg, rstype_t *end, int n_bits, int s) \
  108. { \
  109. rstype_t *i; \
  110. int size = 1<<n_bits, m = size - 1; \
  111. rsbucket_##name##_t *k, b[size], *be = b + size; \
  112. for (k = b; k != be; ++k) k->b = k->e = beg; \
  113. for (i = beg; i != end; ++i) ++b[rskey(*i)>>s&m].e; \
  114. for (k = b + 1; k != be; ++k) \
  115. k->e += (k-1)->e - beg, k->b = (k-1)->e; \
  116. for (k = b; k != be;) { \
  117. if (k->b != k->e) { \
  118. rsbucket_##name##_t *l; \
  119. if ((l = b + (rskey(*k->b)>>s&m)) != k) { \
  120. rstype_t tmp = *k->b, swap; \
  121. do { \
  122. swap = tmp; tmp = *l->b; *l->b++ = swap; \
  123. l = b + (rskey(tmp)>>s&m); \
  124. } while (l != k); \
  125. *k->b++ = tmp; \
  126. } else ++k->b; \
  127. } else ++k; \
  128. } \
  129. for (b->b = beg, k = b + 1; k != be; ++k) k->b = (k-1)->e; \
  130. if (s) { \
  131. s = s > n_bits? s - n_bits : 0; \
  132. for (k = b; k != be; ++k) \
  133. if (k->e - k->b > RS_MIN_SIZE) rs_sort_##name(k->b, k->e, n_bits, s); \
  134. else if (k->e - k->b > 1) rs_insertsort_##name(k->b, k->e); \
  135. } \
  136. } \
  137. void radix_sort_##name(rstype_t *beg, rstype_t *end) \
  138. { \
  139. if (end - beg <= RS_MIN_SIZE) rs_insertsort_##name(beg, end); \
  140. else rs_sort_##name(beg, end, 8, sizeof_key * 8 - 8); \
  141. }
  142. #endif