PageRenderTime 5ms CodeModel.GetById 1ms app.highlight 1ms RepoModel.GetById 1ms app.codeStats 0ms

/tool_data_table_conf.xml.oldlocstyle

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 73 lines | 73 code | 0 blank | 0 comment | 0 complexity | b38cd85c17848b69857ee530d1d33317 MD5 | raw file
 1<!-- Use this file if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 2<tables>
 3    <!-- Locations of all fasta files under genome directory -->
 4    <table name="all_fasta" comment_char="#">
 5        <columns>value, dbkey, name, path</columns>
 6        <file path="tool-data/all_fasta.loc" />
 7    </table>
 8    <!-- Locations of indexes in the BFAST mapper format -->
 9    <table name="bfast_indexes" comment_char="#">
10        <columns>value, dbkey, formats, name, path</columns>
11        <file path="tool-data/bfast_indexes.loc" />
12    </table>
13    <!-- Locations of nucleotide (mega)blast databases -->
14    <table name="blastdb" comment_char="#">
15        <columns>name, value</columns>
16        <file path="tool-data/blastdb.loc" />
17    </table>
18    <!-- Locations of protein (mega)blast databases -->
19    <table name="blastdb_p" comment_char="#">
20        <columns>name, value</columns>
21        <file path="tool-data/blastdb_p.loc" />
22    </table>
23    <!-- Locations of indexes in the Bowtie mapper format -->
24    <table name="bowtie_indexes" comment_char="#">
25        <columns>name, value</columns>
26        <file path="tool-data/bowtie_indices.loc" />
27    </table>
28    <!-- Locations of indexes in the Bowtie color mapper format -->
29    <table name="bowtie_indexes_color" comment_char="#">
30        <columns>name, value</columns>
31        <file path="tool-data/bowtie_indices_color.loc" />
32    </table>
33    <!-- Locations of indexes in the BWA mapper format -->
34    <table name="bwa_indexes" comment_char="#">
35        <columns>name, value</columns>
36        <file path="tool-data/bwa_index.loc" />
37    </table>
38    <!-- Locations of MAF files that have been indexed with bx-python -->
39    <table name="indexed_maf_files">
40        <columns>name, value, dbkey, species</columns>
41        <file path="tool-data/maf_index.loc" />
42    </table>
43    <!-- Locations of fasta files appropriate for NGS simulation -->
44    <table name="ngs_sim_fasta" comment_char="#">
45        <columns>value, dbkey, name, path</columns>
46        <file path="tool-data/ngs_sim_fasta.loc" />
47    </table>
48    <!-- Locations of 2bit sequence files for use in Lastz -->
49    <table name="lastz_seqs" comment_char="#">
50        <columns>name, value</columns>
51        <file path="tool-data/lastz_seqs.loc" />
52    </table>
53    <!-- Locations of PerM base index files -->
54    <table name="perm_base_indexes" comment_char="#">
55        <columns>name, value</columns>
56        <file path="tool-data/perm_base_index.loc" />
57    </table>
58    <!-- Locations of PerM color index files -->
59    <table name="perm_color_indexes" comment_char="#">
60        <columns>name, value</columns>
61        <file path="tool-data/perm_color_index.loc" />
62    </table>
63    <!-- Location of SRMA dict file and other files -->
64    <table name="srma_indexes" comment_char="#">
65        <columns>name, value</columns>
66        <file path="tool-data/srma_index.loc" />
67    </table>
68    <!-- Locations of indexes in the Bowtie mapper format for TopHat to use -->
69    <table name="tophat_indexes" comment_char="#">
70        <columns>name, value</columns>
71        <file path="tool-data/bowtie_indices.loc" />
72    </table>
73</tables>