/run.sh
https://bitbucket.org/cistrome/cistrome-harvard/ · Shell · 79 lines · 69 code · 7 blank · 3 comment · 12 complexity · 143776f69a2b7657673439d43a10eec0 MD5 · raw file
- #!/bin/sh
- cd `dirname $0`
- python ./scripts/check_python.py
- [ $? -ne 0 ] && exit 1
- SAMPLES="
- community_wsgi.ini.sample
- datatypes_conf.xml.sample
- external_service_types_conf.xml.sample
- migrated_tools_conf.xml.sample
- reports_wsgi.ini.sample
- shed_tool_conf.xml.sample
- tool_conf.xml.sample
- shed_tool_data_table_conf.xml.sample
- tool_data_table_conf.xml.sample
- tool_sheds_conf.xml.sample
- data_manager_conf.xml.sample
- shed_data_manager_conf.xml.sample
- openid_conf.xml.sample
- universe_wsgi.ini.sample
- tool-data/shared/ncbi/builds.txt.sample
- tool-data/shared/ensembl/builds.txt.sample
- tool-data/shared/ucsc/builds.txt.sample
- tool-data/shared/ucsc/publicbuilds.txt.sample
- tool-data/shared/ucsc/ucsc_build_sites.txt.sample
- tool-data/shared/igv/igv_build_sites.txt.sample
- tool-data/shared/rviewer/rviewer_build_sites.txt.sample
- tool-data/*.sample
- static/welcome.html.sample
- "
- # Create any missing config/location files
- for sample in $SAMPLES; do
- file=`echo $sample | sed -e 's/\.sample$//'`
- if [ ! -f "$file" -a -f "$sample" ]; then
- echo "Initializing $file from `basename $sample`"
- cp $sample $file
- fi
- done
- if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then
- python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR"
- fi
- # explicitly attempt to fetch eggs before running
- FETCH_EGGS=1
- for arg in "$@"; do
- [ "$arg" = "--stop-daemon" ] && FETCH_EGGS=0; break
- done
- if [ $FETCH_EGGS -eq 1 ]; then
- python ./scripts/check_eggs.py -q
- if [ $? -ne 0 ]; then
- echo "Some eggs are out of date, attempting to fetch..."
- python ./scripts/fetch_eggs.py
- if [ $? -eq 0 ]; then
- echo "Fetch successful."
- else
- echo "Fetch failed."
- exit 1
- fi
- fi
- fi
- if [ -n "$GALAXY_RUN_ALL" ]; then
- servers=`sed -n 's/^\[server:\(.*\)\]/\1/ p' universe_wsgi.ini | xargs echo`
- daemon=`echo "$@" | grep -q daemon`
- if [ $? -ne 0 ]; then
- echo 'ERROR: $GALAXY_RUN_ALL cannot be used without the `--daemon` or `--stop-daemon` arguments to run.sh'
- exit 1
- fi
- for server in $servers; do
- echo "Handling $server with log file $server.log..."
- python ./scripts/paster.py serve universe_wsgi.ini --server-name=$server --pid-file=$server.pid --log-file=$server.log $@
- done
- else
- python ./scripts/paster.py serve universe_wsgi.ini $@
- fi