/scripts/api/sequencer_configuration_create.py

https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 45 lines · 36 code · 3 blank · 6 comment · 6 complexity · 940f37ffbf02ac7b5ff3787732ffac1e MD5 · raw file

  1. #!/usr/bin/env python
  2. import os, sys#, traceback
  3. sys.path.insert( 0, os.path.dirname( __file__ ) )
  4. from common import submit, get
  5. def create_sequencer_configuration( key, base_url, request_form_filename, sample_form_filename, request_type_filename, email_addresses, return_formatted=True ):
  6. #create request_form
  7. data = {}
  8. data[ 'xml_text' ] = open( request_form_filename ).read()
  9. request_form = submit( key, "%sforms" % base_url, data, return_formatted=False )[0]
  10. #create sample_form
  11. data = {}
  12. data[ 'xml_text' ] = open( sample_form_filename ).read()
  13. sample_form = submit( key, "%sforms" % base_url, data, return_formatted=False )[0]
  14. #get user ids
  15. user_ids = [ user['id'] for user in get( key, "%susers" % base_url ) if user['email'] in email_addresses ]
  16. #create role, assign to user
  17. data = {}
  18. data[ 'name' ] = "request_type_role_%s_%s_%s name" % ( request_form['id'], sample_form['id'], '_'.join( email_addresses ) )
  19. data[ 'description' ] = "request_type_role_%s_%s_%s description" % ( request_form['id'], sample_form['id'], '_'.join( email_addresses ) )
  20. data[ 'user_ids' ] = user_ids
  21. role_ids = [ role[ 'id' ] for role in submit( key, "%sroles" % base_url, data, return_formatted=False ) ]
  22. #create request_type
  23. data = {}
  24. data[ 'request_form_id' ] = request_form[ 'id' ]
  25. data[ 'sample_form_id' ] = sample_form[ 'id' ]
  26. data[ 'role_ids' ] = role_ids
  27. data[ 'xml_text' ] = open( request_type_filename ).read()
  28. return submit( key, "%srequest_types" % base_url, data, return_formatted=return_formatted ) #create and print out results for request type
  29. def main():
  30. try:
  31. key = sys.argv[1]
  32. base_url = sys.argv[2]
  33. request_form_filename = sys.argv[3]
  34. sample_form_filename = sys.argv[4]
  35. request_type_filename = sys.argv[5]
  36. email_addresses = sys.argv[6].split( ',' )
  37. except IndexError:
  38. print 'usage: %s key base_url request_form_xml_description_file sample_form_xml_description_file request_type_xml_description_file email_address1[,email_address2]' % os.path.basename( sys.argv[0] )
  39. sys.exit( 1 )
  40. return create_sequencer_configuration( key, base_url, request_form_filename, sample_form_filename, request_type_filename, email_addresses, return_formatted=True )
  41. if __name__ == "__main__":
  42. main()