/scripts/api/sequencer_configuration_create.py
https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 45 lines · 36 code · 3 blank · 6 comment · 6 complexity · 940f37ffbf02ac7b5ff3787732ffac1e MD5 · raw file
- #!/usr/bin/env python
- import os, sys#, traceback
- sys.path.insert( 0, os.path.dirname( __file__ ) )
- from common import submit, get
- def create_sequencer_configuration( key, base_url, request_form_filename, sample_form_filename, request_type_filename, email_addresses, return_formatted=True ):
- #create request_form
- data = {}
- data[ 'xml_text' ] = open( request_form_filename ).read()
- request_form = submit( key, "%sforms" % base_url, data, return_formatted=False )[0]
- #create sample_form
- data = {}
- data[ 'xml_text' ] = open( sample_form_filename ).read()
- sample_form = submit( key, "%sforms" % base_url, data, return_formatted=False )[0]
- #get user ids
- user_ids = [ user['id'] for user in get( key, "%susers" % base_url ) if user['email'] in email_addresses ]
- #create role, assign to user
- data = {}
- data[ 'name' ] = "request_type_role_%s_%s_%s name" % ( request_form['id'], sample_form['id'], '_'.join( email_addresses ) )
- data[ 'description' ] = "request_type_role_%s_%s_%s description" % ( request_form['id'], sample_form['id'], '_'.join( email_addresses ) )
- data[ 'user_ids' ] = user_ids
- role_ids = [ role[ 'id' ] for role in submit( key, "%sroles" % base_url, data, return_formatted=False ) ]
- #create request_type
- data = {}
- data[ 'request_form_id' ] = request_form[ 'id' ]
- data[ 'sample_form_id' ] = sample_form[ 'id' ]
- data[ 'role_ids' ] = role_ids
- data[ 'xml_text' ] = open( request_type_filename ).read()
- return submit( key, "%srequest_types" % base_url, data, return_formatted=return_formatted ) #create and print out results for request type
- def main():
- try:
- key = sys.argv[1]
- base_url = sys.argv[2]
- request_form_filename = sys.argv[3]
- sample_form_filename = sys.argv[4]
- request_type_filename = sys.argv[5]
- email_addresses = sys.argv[6].split( ',' )
- except IndexError:
- print 'usage: %s key base_url request_form_xml_description_file sample_form_xml_description_file request_type_xml_description_file email_address1[,email_address2]' % os.path.basename( sys.argv[0] )
- sys.exit( 1 )
- return create_sequencer_configuration( key, base_url, request_form_filename, sample_form_filename, request_type_filename, email_addresses, return_formatted=True )
- if __name__ == "__main__":
- main()