/scripts/cleanup_datasets/rename_purged_datasets.py
https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 32 lines · 22 code · 5 blank · 5 comment · 6 complexity · 19e4f63d7d6f1ed10f590fc8b704f319 MD5 · raw file
- #!/usr/bin/env python
- """
- Renames a dataset file by appending _purged to the file name so that it can later be removed from disk.
- Usage: python rename_purged_datasets.py purge.log
- """
- import sys, os
- assert sys.version_info[:2] >= ( 2, 4 )
- def main():
- infile = sys.argv[1]
- outfile = infile + ".renamed.log"
- out = open( outfile, 'w' )
-
- print >> out, "# The following renamed datasets can be removed from disk"
- i = 0
- renamed_files = 0
- for i, line in enumerate( open( infile ) ):
- line = line.rstrip( '\r\n' )
- if line and line.startswith( '/var/opt/galaxy' ):
- try:
- purged_filename = line + "_purged"
- os.rename( line, purged_filename )
- print >> out, purged_filename
- renamed_files += 1
- except Exception, exc:
- print >> out, "# Error, exception " + str( exc ) + " caught attempting to rename " + purged_filename
- print >> out, "# Renamed " + str( renamed_files ) + " files"
- if __name__ == "__main__":
- main()