#!/bin/bash

# This script can create a folder under aspera directory according to
# user's name, then send confirmation emails to both the user and
# cistrome admin team.

if [ $# -lt 2 ]; then
    echo "need 1 para: <username> <this week password>!"
    exit
fi

# Modify these according to your server
# ASPERA directory path on server
ASPERA_DIR=/data/CistromeAP/ap_lib/ftp
# ASPERA user name
ASPERA_USER=cistromeap
# ASPERA host name
ASPERA_HOST=cistrome.org
# ASPERA web interface URL
ASPERA_WEB=http://cistrome.org/aspera/user
# cistrome contact email address, a notification email will be BCCed to this email address
CISTROME_CONTACT=cistrome-bugs@jimmy.harvard.edu
# cistrome bugs email address, we will suggest users in the mail body to send questions/feedbacks to this email address.
CISTROME_BUGS=cistrome-bugs@jimmy.harvard.edu

# create folder for cistrome user under aspera path

mkdir ${ASPERA_DIR}/${1}
chown -R ${ASPERA_USER} ${ASPERA_DIR}/${1}

# send email to both admin and user

sendmail ${1} ${CISTROME_CONTACT} <<EOF
From: ${USER}@${ASPERA_HOST}
Subject: [cistrome] Your ASPERA upload directory is ready to use. (Do Not Reply)
To: ${1}
BCC: ${CISTROME_CONTACT}
Hi ${1},

Please login the web interface <${ASPERA_WEB}/?B=%2F${1}> with:

username: ${ASPERA_USER}
password: ${2}

If you know how to use command 'ascp' in terminal, you can also do:

ascp -P 33001 someLocalFile.bam ${ASPERA_USER}@${ASPERA_HOST}:/${1}/

After upload, you will see the file in the 'Upload file' window in CistromeAP site. 

If you have any question, please send email to ${CISTROME_BUGS}. Please do not reply to this email.

Best,
Cistrome Dev Team

--This email was sent by sendmail--

EOF