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/cistromescripts/bioc.R

https://bitbucket.org/cistrome/cistrome-harvard/
R | 37 lines | 37 code | 0 blank | 0 comment | 0 complexity | 70c82a4802acd56c8dc1397847135418 MD5 | raw file
 1source("http://bioconductor.org/biocLite.R")
 2biocLite("affy")
 3biocLite("AffyExpress")
 4biocLite("Category")
 5biocLite("Biobase")
 6biocLite("graph")
 7biocLite("annotate")
 8biocLite("ArrayExpress")
 9biocLite("GEOquery")
10biocLite("oligo")
11biocLite("geneplotter")
12biocLite("gcrma")
13biocLite("maqcExpression4plex")
14biocLite("genefilter")
15biocLite("multtest")
16biocLite("limma")
17biocLite("pd.hg18.60mer.expr") # Platform Design Info for NimbleGen hg18_60mer_expr
18biocLite("annaffy")
19biocLite("GO.db") 
20biocLite("GOstats") # requieres libxml2-dev installed! sudo apt-get install libxml2-dev
21biocLite("hgu133a")
22biocLite("hgu133b")
23biocLite("hgu133plus2.db")
24biocLite("hgu95av2")
25biocLite("mouse430a2.db")
26biocLite("mouse4302.db")
27biocLite("celegans.db")
28biocLite("drosophila2.db")
29biocLite("org.Hs.eg.db")
30biocLite("org.Mm.eg.db")
31biocLite("org.Ce.eg.db")
32biocLite("org.Dm.eg.db")
33biocLite("gplots")
34biocLite("seqLogo")
35biocLite("foreach")
36biocLite("oligoClasses") 
37save.image()