/test-data/sam_merge_out2.log

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 5 lines · 5 code · 0 blank · 0 comment · 0 complexity · e76654d664dae0098b15ca6f2c7c51e4 MD5 · raw file 

    

  1. [Thu Aug 04 13:49:53 EST 2011] net.sf.picard.sam.MergeSamFiles INPUT=[/data/tmp/tmpjnE9mC/database/files/000/dataset_5.dat, /data/tmp/tmpjnE9mC/database/files/000/dataset_6.dat, /data/tmp/tmpjnE9mC/database/files/000/dataset_7.dat] OUTPUT=/data/tmp/tmpjnE9mC/database/files/000/dataset_8.dat MERGE_SEQUENCE_DICTIONARIES=true VALIDATION_STRINGENCY=LENIENT    SORT_ORDER=coordinate ASSUME_SORTED=false USE_THREADING=false TMP_DIR=/tmp/rlazarus VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
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  2. INFO	2011-08-04 13:49:54	MergeSamFiles	Sorting input files using temp directory /tmp/rlazarus
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  3. INFO	2011-08-04 13:49:54	MergeSamFiles	Finished reading inputs.
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  4. [Thu Aug 04 13:49:54 EST 2011] net.sf.picard.sam.MergeSamFiles done.
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  5. Runtime.totalMemory()=2028732416
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