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/test-data/cuffcompare_out5.gtf

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 90 lines | 90 code | 0 blank | 0 comment | 0 complexity | ba70d0c34207c84ab06b4ea07cd2f2a2 MD5 | raw file
 1chr1	Cufflinks	exon	3111450	3111490	.	.	.	gene_id "XLOC_000001"; transcript_id "TCONS_00000001"; exon_number "1"; oId "CUFF.1.1"; class_code "u";
 2chr1	Cufflinks	exon	3111546	3111576	.	.	.	gene_id "XLOC_000002"; transcript_id "TCONS_00000002"; exon_number "1"; oId "CUFF.3.1"; class_code "u";
 3chr1	Cufflinks	exon	3174766	3174792	.	.	.	gene_id "XLOC_000003"; transcript_id "TCONS_00000051"; exon_number "1"; oId "CUFF.1.1"; class_code "u";
 4chr1	Cufflinks	exon	3187402	3187428	.	.	.	gene_id "XLOC_000004"; transcript_id "TCONS_00000052"; exon_number "1"; oId "CUFF.3.1"; class_code "u";
 5chr1	Cufflinks	exon	3188522	3188548	.	.	.	gene_id "XLOC_000005"; transcript_id "TCONS_00000053"; exon_number "1"; oId "CUFF.5.1"; class_code "u";
 6chr1	Cufflinks	exon	3189811	3190789	.	.	.	gene_id "XLOC_000006"; transcript_id "TCONS_00000054"; exon_number "1"; oId "CUFF.11.1"; class_code "u";
 7chr1	Cufflinks	exon	3190859	3191434	.	.	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000055"; exon_number "1"; oId "CUFF.7.1"; class_code "u";
 8chr1	Cufflinks	exon	3191513	3192077	.	.	.	gene_id "XLOC_000008"; transcript_id "TCONS_00000056"; exon_number "1"; oId "CUFF.9.1"; class_code "u";
 9chr1	Cufflinks	exon	3192251	3192336	.	.	.	gene_id "XLOC_000009"; transcript_id "TCONS_00000057"; exon_number "1"; oId "CUFF.13.1"; class_code "u";
10chr1	Cufflinks	exon	3192442	3192494	.	.	.	gene_id "XLOC_000010"; transcript_id "TCONS_00000008"; exon_number "1"; oId "CUFF.39.1"; class_code "u";
11chr1	Cufflinks	exon	3192551	3192629	.	.	.	gene_id "XLOC_000011"; transcript_id "TCONS_00000009"; exon_number "1"; oId "CUFF.41.1"; class_code "u";
12chr1	Cufflinks	exon	3192650	3192676	.	.	.	gene_id "XLOC_000012"; transcript_id "TCONS_00000058"; exon_number "1"; oId "CUFF.15.1"; class_code "u";
13chr1	Cufflinks	exon	3192732	3192811	.	.	.	gene_id "XLOC_000013"; transcript_id "TCONS_00000010"; exon_number "1"; oId "CUFF.43.1"; class_code "u";
14chr1	Cufflinks	exon	3192941	3193042	.	.	.	gene_id "XLOC_000014"; transcript_id "TCONS_00000011"; exon_number "1"; oId "CUFF.45.1"; class_code "u";
15chr1	Cufflinks	exon	3194186	3194226	.	.	.	gene_id "XLOC_000015"; transcript_id "TCONS_00000012"; exon_number "1"; oId "CUFF.47.1"; class_code "u";
16chr1	Cufflinks	exon	3194303	3194329	.	.	.	gene_id "XLOC_000016"; transcript_id "TCONS_00000013"; exon_number "1"; oId "CUFF.49.1"; class_code "u";
17chr1	Cufflinks	exon	3194707	3194733	.	.	.	gene_id "XLOC_000017"; transcript_id "TCONS_00000059"; exon_number "1"; oId "CUFF.17.1"; class_code "u";
18chr1	Cufflinks	exon	3195084	3195110	.	.	.	gene_id "XLOC_000018"; transcript_id "TCONS_00000014"; exon_number "1"; oId "CUFF.51.1"; class_code "u";
19chr1	Cufflinks	exon	3195451	3195477	.	.	.	gene_id "XLOC_000019"; transcript_id "TCONS_00000015"; exon_number "1"; oId "CUFF.53.1"; class_code "u";
20chr1	Cufflinks	exon	3197090	3197116	.	.	.	gene_id "XLOC_000020"; transcript_id "TCONS_00000016"; exon_number "1"; oId "CUFF.55.1"; class_code "u";
21chr1	Cufflinks	exon	3197247	3197273	.	.	.	gene_id "XLOC_000021"; transcript_id "TCONS_00000017"; exon_number "1"; oId "CUFF.57.1"; class_code "u";
22chr1	Cufflinks	exon	3197347	3197373	.	.	.	gene_id "XLOC_000022"; transcript_id "TCONS_00000018"; exon_number "1"; oId "CUFF.59.1"; class_code "u";
23chr1	Cufflinks	exon	3197426	3197452	.	.	.	gene_id "XLOC_000023"; transcript_id "TCONS_00000060"; exon_number "1"; oId "CUFF.19.1"; class_code "u";
24chr1	Cufflinks	exon	3200023	3200191	.	.	.	gene_id "XLOC_000024"; transcript_id "TCONS_00000019"; exon_number "1"; oId "CUFF.7.1"; class_code "u";
25chr1	Cufflinks	exon	3200326	3200352	.	.	.	gene_id "XLOC_000025"; transcript_id "TCONS_00000020"; exon_number "1"; oId "CUFF.5.1"; class_code "u";
26chr1	Cufflinks	exon	3200431	3200457	.	.	.	gene_id "XLOC_000026"; transcript_id "TCONS_00000062"; exon_number "1"; oId "CUFF.21.1"; class_code "u";
27chr1	Cufflinks	exon	3201008	3201039	.	.	.	gene_id "XLOC_000027"; transcript_id "TCONS_00000063"; exon_number "1"; oId "CUFF.26.1"; class_code "u";
28chr1	Cufflinks	exon	3201078	3201481	.	.	.	gene_id "XLOC_000028"; transcript_id "TCONS_00000021"; exon_number "1"; oId "CUFF.9.1"; class_code "u";
29chr1	Cufflinks	exon	3201597	3201666	.	.	.	gene_id "XLOC_000029"; transcript_id "TCONS_00000065"; exon_number "1"; oId "CUFF.29.1"; class_code "u";
30chr1	Cufflinks	exon	3201673	3201699	.	.	.	gene_id "XLOC_000030"; transcript_id "TCONS_00000022"; exon_number "1"; oId "CUFF.11.1"; class_code "u";
31chr1	Cufflinks	exon	3201726	3201809	.	.	.	gene_id "XLOC_000031"; transcript_id "TCONS_00000066"; exon_number "1"; oId "CUFF.31.1"; class_code "u";
32chr1	Cufflinks	exon	3204755	3204833	.	.	.	gene_id "XLOC_000032"; transcript_id "TCONS_00000023"; exon_number "1"; oId "CUFF.13.1"; class_code "u";
33chr1	Cufflinks	exon	3211522	3211561	.	.	.	gene_id "XLOC_000033"; transcript_id "TCONS_00000067"; exon_number "1"; oId "CUFF.33.1"; class_code "u";
34chr1	Cufflinks	exon	3212214	3212292	.	.	.	gene_id "XLOC_000034"; transcript_id "TCONS_00000024"; exon_number "1"; oId "CUFF.15.1"; class_code "u";
35chr1	Cufflinks	exon	3212368	3212439	.	.	.	gene_id "XLOC_000035"; transcript_id "TCONS_00000025"; exon_number "1"; oId "CUFF.19.1"; class_code "u";
36chr1	Cufflinks	exon	3212718	3212801	.	.	.	gene_id "XLOC_000036"; transcript_id "TCONS_00000068"; exon_number "1"; oId "CUFF.35.1"; class_code "u";
37chr1	Cufflinks	exon	3213096	3213192	.	.	.	gene_id "XLOC_000037"; transcript_id "TCONS_00000026"; exon_number "1"; oId "CUFF.17.1"; class_code "u";
38chr1	Cufflinks	exon	3213119	3213242	.	.	.	gene_id "XLOC_000037"; transcript_id "TCONS_00000069"; exon_number "1"; oId "CUFF.37.1"; class_code "u";
39chr1	Cufflinks	exon	3240607	3240633	.	.	.	gene_id "XLOC_000038"; transcript_id "TCONS_00000070"; exon_number "1"; oId "CUFF.39.1"; class_code "u";
40chr1	Cufflinks	exon	3242480	3242512	.	.	.	gene_id "XLOC_000039"; transcript_id "TCONS_00000071"; exon_number "1"; oId "CUFF.41.1"; class_code "u";
41chr1	Cufflinks	exon	3242634	3242923	.	.	.	gene_id "XLOC_000040"; transcript_id "TCONS_00000027"; exon_number "1"; oId "CUFF.25.1"; class_code "u";
42chr1	Cufflinks	exon	3242925	3243005	.	.	.	gene_id "XLOC_000041"; transcript_id "TCONS_00000072"; exon_number "1"; oId "CUFF.43.1"; class_code "u";
43chr1	Cufflinks	exon	3243019	3243079	.	.	.	gene_id "XLOC_000042"; transcript_id "TCONS_00000028"; exon_number "1"; oId "CUFF.21.1"; class_code "u";
44chr1	Cufflinks	exon	3243109	3243154	.	.	.	gene_id "XLOC_000043"; transcript_id "TCONS_00000073"; exon_number "1"; oId "CUFF.45.1"; class_code "u";
45chr1	Cufflinks	exon	3243348	3243401	.	.	.	gene_id "XLOC_000044"; transcript_id "TCONS_00000029"; exon_number "1"; oId "CUFF.23.1"; class_code "u";
46chr1	Cufflinks	exon	3254080	3254106	.	.	.	gene_id "XLOC_000045"; transcript_id "TCONS_00000074"; exon_number "1"; oId "CUFF.47.1"; class_code "u";
47chr1	Cufflinks	exon	3256975	3257011	.	.	.	gene_id "XLOC_000046"; transcript_id "TCONS_00000030"; exon_number "1"; oId "CUFF.27.1"; class_code "u";
48chr1	Cufflinks	exon	3277156	3277182	.	.	.	gene_id "XLOC_000047"; transcript_id "TCONS_00000075"; exon_number "1"; oId "CUFF.49.1"; class_code "u";
49chr1	Cufflinks	exon	3277191	3277218	.	.	.	gene_id "XLOC_000048"; transcript_id "TCONS_00000031"; exon_number "1"; oId "CUFF.61.1"; class_code "u";
50chr1	Cufflinks	exon	3277914	3278390	.	.	.	gene_id "XLOC_000049"; transcript_id "TCONS_00000076"; exon_number "1"; oId "CUFF.51.1"; class_code "u";
51chr1	Cufflinks	exon	3280118	3280144	.	.	.	gene_id "XLOC_000050"; transcript_id "TCONS_00000077"; exon_number "1"; oId "CUFF.53.1"; class_code "u";
52chr1	Cufflinks	exon	3280499	3280525	.	.	.	gene_id "XLOC_000051"; transcript_id "TCONS_00000078"; exon_number "1"; oId "CUFF.55.1"; class_code "u";
53chr1	Cufflinks	exon	3280687	3280741	.	.	.	gene_id "XLOC_000052"; transcript_id "TCONS_00000033"; exon_number "1"; oId "CUFF.65.1"; class_code "u";
54chr1	Cufflinks	exon	3282505	3282531	.	.	.	gene_id "XLOC_000053"; transcript_id "TCONS_00000079"; exon_number "1"; oId "CUFF.57.1"; class_code "u";
55chr1	Cufflinks	exon	3282651	3282677	.	.	.	gene_id "XLOC_000054"; transcript_id "TCONS_00000080"; exon_number "1"; oId "CUFF.59.1"; class_code "u";
56chr1	Cufflinks	exon	3282761	3282832	.	.	.	gene_id "XLOC_000055"; transcript_id "TCONS_00000081"; exon_number "1"; oId "CUFF.61.1"; class_code "u";
57chr1	Cufflinks	exon	3284967	3284993	.	.	.	gene_id "XLOC_000056"; transcript_id "TCONS_00000082"; exon_number "1"; oId "CUFF.63.1"; class_code "u";
58chr1	Cufflinks	exon	3290489	3290553	.	.	.	gene_id "XLOC_000057"; transcript_id "TCONS_00000034"; exon_number "1"; oId "CUFF.67.1"; class_code "u";
59chr1	Cufflinks	exon	3290799	3290859	.	.	.	gene_id "XLOC_000058"; transcript_id "TCONS_00000083"; exon_number "1"; oId "CUFF.65.1"; class_code "u";
60chr1	Cufflinks	exon	3290920	3291273	.	.	.	gene_id "XLOC_000059"; transcript_id "TCONS_00000084"; exon_number "1"; oId "CUFF.69.1"; class_code "u";
61chr1	Cufflinks	exon	3299444	3299640	.	.	.	gene_id "XLOC_000060"; transcript_id "TCONS_00000085"; exon_number "1"; oId "CUFF.67.1"; class_code "u";
62chr1	Cufflinks	exon	3299610	3299664	.	.	.	gene_id "XLOC_000060"; transcript_id "TCONS_00000037"; exon_number "1"; oId "CUFF.73.1"; class_code "u";
63chr1	Cufflinks	exon	3299692	3299733	.	.	.	gene_id "XLOC_000061"; transcript_id "TCONS_00000086"; exon_number "1"; oId "CUFF.71.1"; class_code "u";
64chr1	Cufflinks	exon	3300052	3300078	.	.	.	gene_id "XLOC_000062"; transcript_id "TCONS_00000038"; exon_number "1"; oId "CUFF.75.1"; class_code "u";
65chr1	Cufflinks	exon	3307749	3307775	.	.	.	gene_id "XLOC_000063"; transcript_id "TCONS_00000087"; exon_number "1"; oId "CUFF.73.1"; class_code "u";
66chr1	Cufflinks	exon	3318621	3318647	.	.	.	gene_id "XLOC_000064"; transcript_id "TCONS_00000088"; exon_number "1"; oId "CUFF.75.1"; class_code "u";
67chr1	Cufflinks	exon	3319000	3319051	.	.	.	gene_id "XLOC_000065"; transcript_id "TCONS_00000039"; exon_number "1"; oId "CUFF.77.1"; class_code "u";
68chr1	Cufflinks	exon	3330528	3330554	.	.	.	gene_id "XLOC_000066"; transcript_id "TCONS_00000089"; exon_number "1"; oId "CUFF.77.1"; class_code "u";
69chr1	Cufflinks	exon	3351241	3351311	.	.	.	gene_id "XLOC_000067"; transcript_id "TCONS_00000090"; exon_number "1"; oId "CUFF.79.1"; class_code "u";
70chr1	Cufflinks	exon	3355888	3355914	.	.	.	gene_id "XLOC_000068"; transcript_id "TCONS_00000040"; exon_number "1"; oId "CUFF.79.1"; class_code "u";
71chr1	Cufflinks	exon	3355908	3356119	.	.	.	gene_id "XLOC_000068"; transcript_id "TCONS_00000091"; exon_number "1"; oId "CUFF.81.1"; class_code "u";
72chr1	Cufflinks	exon	3356181	3356225	.	.	.	gene_id "XLOC_000069"; transcript_id "TCONS_00000092"; exon_number "1"; oId "CUFF.83.1"; class_code "u";
73chr1	Cufflinks	exon	3363077	3363176	.	.	.	gene_id "XLOC_000070"; transcript_id "TCONS_00000093"; exon_number "1"; oId "CUFF.85.1"; class_code "u";
74chr1	Cufflinks	exon	3363215	3363278	.	.	.	gene_id "XLOC_000071"; transcript_id "TCONS_00000041"; exon_number "1"; oId "CUFF.81.1"; class_code "u";
75chr1	Cufflinks	exon	3363388	3363446	.	.	.	gene_id "XLOC_000072"; transcript_id "TCONS_00000094"; exon_number "1"; oId "CUFF.87.1"; class_code "u";
76chr1	Cufflinks	exon	3363754	3363849	.	.	.	gene_id "XLOC_000073"; transcript_id "TCONS_00000042"; exon_number "1"; oId "CUFF.83.1"; class_code "u";
77chr1	Cufflinks	exon	3364872	3364919	.	.	.	gene_id "XLOC_000074"; transcript_id "TCONS_00000095"; exon_number "1"; oId "CUFF.89.1"; class_code "u";
78chr1	Cufflinks	exon	3367136	3367162	.	.	.	gene_id "XLOC_000075"; transcript_id "TCONS_00000043"; exon_number "1"; oId "CUFF.85.1"; class_code "u";
79chr1	Cufflinks	exon	3367211	3367237	.	.	.	gene_id "XLOC_000076"; transcript_id "TCONS_00000096"; exon_number "1"; oId "CUFF.91.1"; class_code "u";
80chr1	Cufflinks	exon	3367334	3367382	.	.	.	gene_id "XLOC_000077"; transcript_id "TCONS_00000044"; exon_number "1"; oId "CUFF.87.1"; class_code "u";
81chr1	Cufflinks	exon	3369581	3369607	.	.	.	gene_id "XLOC_000078"; transcript_id "TCONS_00000097"; exon_number "1"; oId "CUFF.93.1"; class_code "u";
82chr1	Cufflinks	exon	3375002	3375028	.	.	.	gene_id "XLOC_000079"; transcript_id "TCONS_00000098"; exon_number "1"; oId "CUFF.95.1"; class_code "u";
83chr1	Cufflinks	exon	3377212	3377262	.	.	.	gene_id "XLOC_000080"; transcript_id "TCONS_00000045"; exon_number "1"; oId "CUFF.89.1"; class_code "u";
84chr1	Cufflinks	exon	3379889	3379915	.	.	.	gene_id "XLOC_000081"; transcript_id "TCONS_00000099"; exon_number "1"; oId "CUFF.97.1"; class_code "u";
85chr1	Cufflinks	exon	3386740	3386836	.	.	.	gene_id "XLOC_000082"; transcript_id "TCONS_00000100"; exon_number "1"; oId "CUFF.99.1"; class_code "u";
86chr1	Cufflinks	exon	3391326	3391352	.	.	.	gene_id "XLOC_000083"; transcript_id "TCONS_00000046"; exon_number "1"; oId "CUFF.91.1"; class_code "u";
87chr1	Cufflinks	exon	3435842	3435880	.	.	.	gene_id "XLOC_000084"; transcript_id "TCONS_00000047"; exon_number "1"; oId "CUFF.93.1"; class_code "u";
88chr1	Cufflinks	exon	3447762	3447788	.	.	.	gene_id "XLOC_000085"; transcript_id "TCONS_00000048"; exon_number "1"; oId "CUFF.95.1"; class_code "u";
89chr1	Cufflinks	exon	3450907	3450965	.	.	.	gene_id "XLOC_000086"; transcript_id "TCONS_00000049"; exon_number "1"; oId "CUFF.97.1"; class_code "u";
90chr1	Cufflinks	exon	3451052	3451109	.	.	.	gene_id "XLOC_000087"; transcript_id "TCONS_00000050"; exon_number "1"; oId "CUFF.99.1"; class_code "u";