/test-data/maf_reverse_complement_out.dat
Unknown | 55 lines | 46 code | 9 blank | 0 comment | 0 complexity | 9c60e4e3b9e2cf7e72e749894107bf11 MD5 | raw file
1##maf version=1 2a score=60426.0 3s hg17.chr7 31156613 331 - 158628139 TTAGTGGATGTT-------------------TTCA-------TACCTCCAT-----CAGGACATCAGTGGC-AGTATTT-------------------------------GGGAAGTTTTAAAAGGTGGTCTTTATAGCATCTCTTCCTCCAGTCAACAAACACACAGTCTTATATGTTTGTGAGAtacataacacactatgcctaaaacttagtggcttaacccaagactatttatttagctcataattctgtgggtccagcaatatggcctgactcaTGCCTGTGGTGGCTGGCTGGCTATCAGCTAAGATGATGAGGGTAACtggtctagcctgggcttgtttacatggtgacagctgctggattccctagagcagcaaaagatggcaaac 4s panTro1.chr6 31691568 331 - 161576975 TTAGTGGATGTT-------------------TTCA-------TACCTCCAT-----CAGGACATCAGTGGC-AGTATTT-------------------------------GGGAAGTTTCAAAAGGTGGTCTTTATAGCATCTCTTCCTCCAGTCAACAAACACACAGTCTTATATGTTTGTGAGAtacataacacactatgcctaaaacttagtggcttaacccaagactatttatttagctcataattctgtgggtccagcaatatggcctgactcaTGCCTGTGGTGGCTGGCTGGCTATCAGCTAAGATGATGAGGGTAACtggtctagcctgggcttgtttacatggtgacagctgctggattcccaagagcagcaaaagatggcaaac 5s mm5.chr6 120816603 357 - 149721531 TTAGTGATTTTTAAAAAAACAGTTACAGTGTCTCACTAATGCTACCTCCATGAGTTCAGCCCATTACTAGTGAGTATTTTTACACCTGTTGGCCTGCCTATAGCTAAACTGGGGGCTTTTTAAATGTAACCCCCTTGCTGTCTCTTCCTGCAG----CAAGCACACGATCTTAGAG--TCATGAGTAACACCGCAAACTGGCCCCAAGGCTTG-------AAACAACAGCCAGGTTTCCAGATCACGGTTCAGTGGATC-AATGGCATAGCCTTATTCCTG-----AGTGGC-AACTGACTGCCAGCTGCAGTCAAGATAGTAACTGGACCACCCTCG-TTTGTTTCCATGGTGACAG----------------AACAGCAAACGAGAGTGGAG 6s rn3.chr4 131192656 282 - 187371129 TTAGTGAGTATT-------------------GTTA-------TACC--CAT-----TGGGCTGTCTACAGCTAGACTCC---------------------------------GAACCTTTTAAAGGTAATCCTCTTGCCGTCTCTTCCTGGAG----CAAACACACAATCTTAGAG--TCATGAGTGACACCGCAAACTGGCCCCA----------------------GCCAAATTCCTAGATCAAGGTTCAGTGGATC-AATGGTATGGCCTTATTCCTGTGAGTGGCAGCTAGCTGAC-AGCTGCTGTGATCAAGATAGTAACTGGGCTAGCCTGTGTTTGTCTCCATAGTGACAG----------------AACAGCAAATGAGAGTGAAG 7 8a score=8157.0 9s hg17.chr7 31156555 58 - 158628139 CCTCTTCCACTATAGACCTCCTTAAACAAAATAATGAAAAATGAATAAACCACAAATT 10s panTro1.chr6 31691510 58 - 161576975 CCTCTTCCACTATAGACCTCCTTAAACAAAATAATGAAAAACGAATAAACCACAAATT 11s mm5.chr6 120816549 54 - 149721531 CCTCTTCCACTGAGGAATTTCTTTTTTTAAATGATGAGCAATCAATGAAACG----TT 12 13a score=43613.0 14s hg17.chr7 31156451 104 - 158628139 aaaaataaggaagaatttctg-tgtaactgcaagaccattatcacacaataataattccctaacatcgtgaaagctagtctatacaa---aatttccCCAAATATCTC 15s panTro1.chr6 31691406 104 - 161576975 aaaaataaggaagaatttctg-tgtaactgcaagaccattatcacacaataataactccctaacatcgtgaaagctagtctatacaa---aatttccCCAAATGTCTC 16s mm5.chr6 120812304 102 - 149721531 AAAAGTAAGGGTTTTTTTTTAATTTAACCATAATATCACTATCAAACAATAGCAATTCTTTAAGATCATGAAAG------TATACATCGTATTTCCCCCAAATGTCTC 17s rn3.chr4 131188834 99 - 187371129 ACAACTAAG--ATTTTTTTTA-TTTAACCATAAGATCACTATCAAACAGTAGCAATTCTTTAAGATCATGGAAG------TGCACATCATATTTCCCCCAAATATCTC 18s canFam1.chr14 10685009 108 + 63549963 AAAAATAAGGAAGCATTTCCCCCATAACCACGAGACTATCATCAGACAATTATAATTTCTTAGCATCACAAAAGAGCAACACTACATTCAAATTCCCCCAAATATCTC 19 20a score=63217.0 21s hg17.chr7 31156268 183 - 158628139 tttttaaatgaaaaatttaaacatacagaaaagtgtgcaatactatagtgaactacaatatacccatcacctagatttaataattattat-tttccatattt--gcttcatt----------------aattattttgg-----caaaaacattttaaagtgtattgcacacatcatgacatttt---atcccta----ctttggtgc---ttccca 22s panTro1.chr6 31691223 183 - 161576975 tttttaaatgaaaattttaaacatacagaaaagtgtgcaatactatagtgaactacaatatacccatcacctagatttaataattattat-tttccatattt--gcttcatt----------------aattattttgg-----caaaaatattttaaagcgtattgcacacatcatgacatttt---atcccta----ctttggtgt---ttccca 23s mm5.chr6 120812128 176 - 149721531 TTTTAAAATGAAAATTTCAAACACA----ATAGTGAAAAATAATATAGTGAGTTA-----TACTTATTACCCATATGTAATAATTGCTAT-TTCCCATAGTTTAGCCTCAG---------------------GTTTT-------CAAAATTATTTTAAAGCAAATTGCAGACACTATGACATTGTCATACCCCTAAATATTTGAGTAT---TTTATG 24s rn3.chr4 131188640 194 - 187371129 TTTTCAAATGAAAAATTCTAAGAAA-------------AATAATATAACGAATTA-----TACTTATTACCCATATGTAACAATTACCAC-TTCCCATAGTGTAGCTTCAGTTTTTCAAAATTATTAAAACTTTTTTAAATATTTAAAAAT-CTTTAAAGCAAATTGCAGACACTGTGACATTGTCACGCCCCTAAATATTTGAGTAT---TTTCTA 25s canFam1.chr14 10684651 163 + 63549963 TTTTTAAATGAAAATTTCAAACATATGGAAAAG---------------------------TATGCAtcacctagatttaatgattattgtcttcccatattt--gcttcatt----------------tact-ttttgg-----ctaaaatattttaaagccaattgcaaacatcatgacatttc---atccttaaatacttcagtttgtgtctcta 26 27a score=8913.0 28s hg17.chr7 31156227 40 - 158628139 tgctatgctcctagctcatagcctggtgtcta-----gctcaaag 29s panTro1.chr6 31691182 40 - 161576975 tgctatgctcctagctcatagcctggtgtcta-----gctcaaag 30s mm5.chr6 120810825 44 - 149721531 CGCTGTA-TCCAATTTAAGAGCTCAGTGCCTACCTAAGCACAAAG 31s canFam1.chr14 10684385 40 + 63549963 tgctatatacccagctcatagtccaggatcta-----gcaTGATG 32 33a score=91878.0 34s hg17.chr7 31155892 335 - 158628139 tcccggtacttttccagtgccaagaacacatgggtgcc-cagggaaaatttgctgaatTGAACCCCAGGAACAACACACACCATAGAGATGATT-TTTGTTATGTGTTATATTCATGT-ACCACTATACAGGGATTCCTCTAGACGCAAGGCCACTGGGAAGG------TAAATGTTTAAAACTTGGGAAAACACACCTGCAGTGATGATG---CGGAGGGAACAGGAAAAGCCAGGATCACA-CAGGTCCTGGAGACCACAGTCACATTGCATTCGAGGCTTCCTAATGGAAACATGTTTCCCAGagaatgtgcattcttt-gag--------------------------------------------------ttggtaggagtctat----------------------------------------------------------------------------------------------ttggtcat 35s panTro1.chr6 31690847 335 - 161576975 tcccggtacttttccagtgccaagaacacatgggtgcc-caggaaaaatttgctgaatTGAACCCCAGGAACAACACACACCATAGAGATGATT-TTTGTTATGTGTTATATTCATGT-ACCACTATACAGGGATTCCTCTAGACGCAAGGCCACTGGGAAGG------TAAATGTTTAAAACTTGGGAAAATACACCTGCAGTGATGATG---CAGAGGGAACAGGAAAAGCCAGGATCACA-CATGTCCTGGAGACCACAGTCACATTGCATTCGAGGCTTCCTAATGGAAACATGTTTCCCAGagaatgtgcattcttt-gag--------------------------------------------------ttggtaggagtctat----------------------------------------------------------------------------------------------ttggtcat 36s mm5.chr6 120810475 350 - 149721531 TCCTGGTGCCTTCACAGCACCAA----------------CAGGAAAGATTTGCAGAGGTGACTTCCAG-ATTACCATGCACCACCCGGCTG------------------------TGC-ACTTCACTATGAATATTCTTCTAGATTTGAGGC-ACTGGAAAGGAGGGGGTACTTTCTTTAAACTTGAGGAAATATATTCGTGGTAATGATG---TGAAAGAAACCAGGAAAACCAGGTTTAAGGCGGGGCCTGGG--CAACTGTCATAGTGTACTTGGGACTTTCTAGCGGATGCATGTTCCTCAAAGACAACCCACCCTGT-GAGGCTATAGGTTTTTTTGGTTTTTGGTTTTTGGTTTTTTTGTTTGTTTGTTTTTTGTTGTTGTTTTT----------------------------------------------------------------------------------------------TTGCTCAT 37s rn3.chr4 131187261 420 - 187371129 ACCTGGTACCTTCACAGCACCAACACCATGTAGGTTCCCCGGGAAAGGTTTGCTGAGGTGACTTCCGG-GATACCATATACCACACAGCTG---------------TCGGGTTAGTGT-ACATCATTATGAATGTGCTTCTAGATCTAGGGC-ACTGGAAAGGAGTGG-GACTTCTTTTAAACCTGAGAAAATGTATTTGTGGTAATGGTG---TGAAAGAAACCAGGAAGACCAGGTTCAAGGTGGTGCCTGGGGGCAACCATCACATTGTATTTGAGACTTCCTAGGGTTAGCACGCTCCTCAAAGACAACCCACCCTGT-GAG--------------------------------------------------GTTATAGGTTTCTGCCCAGCACTGTTAAGAGCTCAGCACCTACCTAGCACAAAGCTAGATTATCTTTTTATGTCTCCATTCACAATGCTATACATGTAAACAGTGTATATTGGTCAT 38s canFam1.chr14 10684049 336 + 63549963 TCCTGGTACGTTTGCAGTGCCAGGTGCAT----GTGCT-CAGAAGAAGTTTCCCGAACAGAACCTCAGGGGCAACATGCACCACAGAACTGATTATTTCTGACCTTCAGTATTAGTGCCACCATAGTGGGGGGACTCCTCTAGACTCAAGGCCACCGGGAAG-------CAGATATTTAAAATGTGGGAAAACACACCTGCAGTGATGATGGTGTGGAGGGGACATGGAACGGTAGGCTGACA-TAGGTCCTGGCGGC-ACCATCAGATCACATTGGAGACTTTCTTATGGAAACATGTTCCCCAAAGGTtgtgtgctccatcaag--------------------------------------------------actgcagggctctgtt---------------------------------------------------------------------------------------------ttgttcac 39 40a score=82819.0 41s hg17.chr7 31155458 423 - 158628139 acaggaaatttgcatttctgtgtct----ataaagttttgaattctgtcaacaaaaaattgtgta---aattgtttattcttgttgtataagtacccatgtaatatcctca-attttgc--cttggcttagaaagcctaaaatgttttctacctggccctt-tagagaaagttc-ccagcccttgAACCAGGGAACACACATACATTG-------CACATTGATTCCTCCAGGCCTTTTTTCTTTCCAGTCCGTCTGTGGGGATGCCCAACTGTGCATCCATCGCTTCTCCCGGAAGAATCTCCCC-ATTCCACTAGGGCCTCTCCATCCT---TAAAGAAGCTTTTCCTAGTTCCCCTTGCAGCTAATTCCTGTCTCTCAGTCTGGGTTGGGTG-CCCCTTTCCAtctcctcccttaggtttta---agaggacagggat-tgggccatc 42s panTro1.chr6 31690413 423 - 161576975 acaggaaatttacatttctgtgtct----ataaagttttgaattctgtcaacaaaaaattgtgta---aattgtttattcttgttgtataagtacccatgtaatatcctca-attttgc--cttggcttagaaagcctaaaatgttttctacctggccctt-tagagaaagttc-ccagcccttgAACCAGGGAACACACATACATTG-------CACATTGATTCCTCCAGGCCTTTTTTCTTTCCAGTCCGTCTGTGGGGATGCCCAACTGCGCATCCATCGCTTCTCCCGGAAGAATCTCCCC-ATTCCACTAGGGTCTCTCCATCCT---TAAAGAAGCTTTTCCTAGTTCCCCTTGCAGCTAATTCCTGTCTCTCAGTCTGGGTTGGGTG-CCCCTTTCCAtctcctcccttaggtttta---agaggacagggat-tgggccatc 43s mm5.chr6 120810130 334 - 149721531 TTAAGAAATTAAAACTTTAGCATCCTCAAATAAAGTTCTGAATTTGGTCAACCAAAAATTGT-------CTTGTTTTCTCTTGT---ATAAGTACCCACGGGGTAACCTTT-ATTTCCC-TCTTGGCCTGCCAAGCGAGAATTGTTTGCTAACCTGC---------------------------AAACTATGAAACCTACACACACC--------TGCGCTGGCTGCTCCTGGCTCCCAGTCCTGCCCGTCTCT-TATGGGCGTTCCTGGAGTCAGGTCCATCCCTTCTGCCCACAGAACCCCCCCTGTTTTGCATAGGCCCTGCTCTCCA-----------------------CCACTGGCAG---------GCTTCCTTGTCTA---TGGAC----------------------------------AGAGAACAGAGCCCTCTGCCATT 44s rn3.chr4 131186910 340 - 187371129 AAAAGAAATTTAAACTTTAGCATCCTCAAATAAAGTTCTGAATTTGGTCAACCAAAAATTGT-------CTTGTTTTCTCTTGT---GTAAGCACTCACGGGGTCACCTTC-AGTTTCC-TCTTGGCCTGCAAAGCAGGAATTGTTTGCCAACCTGC---------------------------AAACTATGAAATATACACACGCCCGCACACCTGCGCTGGCTTCTCCTGGGTCTCAGTCCTGCCAGCCTCTCTATGGCTATGTCCGGAGGCTAGTCCATCCCTTCTGCCTACAGAAGCCCCCT-CTTTTGCATAGGCCCTGCTCTCCA---T----------------------CTGAGAG---------GCTTCTTTGACTA---TGGAC----------------------------------AGAGAACAGGGGCCTCTGCCATT 45s canFam1.chr14 10683450 405 + 63549963 atatgaagtttacattttggcatccctaagtaaagttttgaattttatc--caaaaaattccgggggcaacttttccctcttgt---------acctac---ataccctctgatgtcgcctcttggtctgaaaagcctaaaatgtttatcatcccacccttagagagaaagtttgccaacccTGGAACTAGAAAA------TACATTG-------CACGTTAGCTCTTCTGGGTCTTTATTCCTGCCAGTC-GTGGGCGGGCATGCAGGACTGCTCAATCAGGCCTTCTCCAAGCA--------CC---------GGGGTCTCTTCTTCCTGGTTGAAGTAGCTTGTCCTGGTCACCTTTCCAGCCAACTCCCCTCATTCCAACTGGCTTGCGTGACCTCTTCCCACCTCTGCCCACAGGCTGTAAGTGGAAGGCAGGCAT-CAAGTCTCC 46 47a score=15522.0 48s hg17.chr7 31154233 97 - 158628139 gcaaatgacgttggtgaaccgagcctg-ccactgccgggtttggtaatgcccaaaagctaagaatggtttctacatttgtaaaagtttgaaaaaaaaa 49s panTro1.chr6 31689192 97 - 161576975 GCAAATGATGTTGGTGAACCGAGCCTT-ccactgccgggtttggtaatgcccaaaagctaagaatggtttctacatttgtaaaagtttgaaaaaaaaa 50s canFam1.chr14 10683318 97 + 63549963 gcaagttatgtgggtgagccaaatccgaccaccaccaggaccaccatggccccga-gctaggaatggtttttgcatttttaaagagttgaaaaatata 51 52a score=28088.0 53s hg17.chr7 31153902 331 - 158628139 agccaggcgtggtagctcaagcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggatttcgagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaattagccaggtgtggtggtgagtgtctgtaatcccagctacttgagaggctgaggcaggagaatggcttgaacctgggaagtggaggttgcagtgagccaagatcagaccattgcactacagcctgggcaacaagagtgaaactctgtctcaat-aaaaaaaacaaaacaaaacaaaacCCATAACATAAAGcggggaact 54s panTro1.chr6 31688874 318 - 161576975 agccaggcgtggtagctcaagcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggatttcgagaccagcctggccaacatgatgaaacctcatctctactaaaaatacaaaattagccaggtgtggtggtgagtgtctgtaatcccagctacttgagaggctgaggcaggagaatggcttgaacctgggaagtggaggttgcagtgagcca--------------cactacagcctgggcaacaagagtgaaactctgtctcaataaaaaaaaaaaaaaaaaaaaaaaaCCCATAATATAAAGCGGGGAACT 55