/test-data/maf_reverse_complement_out.dat

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 55 lines · 46 code · 9 blank · 0 comment · 0 complexity · 9c60e4e3b9e2cf7e72e749894107bf11 MD5 · raw file 

    

  1. ##maf version=1
    2. 

  2. a score=60426.0
    3. 

  3. s hg17.chr7     31156613 331 - 158628139 TTAGTGGATGTT-------------------TTCA-------TACCTCCAT-----CAGGACATCAGTGGC-AGTATTT-------------------------------GGGAAGTTTTAAAAGGTGGTCTTTATAGCATCTCTTCCTCCAGTCAACAAACACACAGTCTTATATGTTTGTGAGAtacataacacactatgcctaaaacttagtggcttaacccaagactatttatttagctcataattctgtgggtccagcaatatggcctgactcaTGCCTGTGGTGGCTGGCTGGCTATCAGCTAAGATGATGAGGGTAACtggtctagcctgggcttgtttacatggtgacagctgctggattccctagagcagcaaaagatggcaaac 
    4. 

  4. s panTro1.chr6  31691568 331 - 161576975 TTAGTGGATGTT-------------------TTCA-------TACCTCCAT-----CAGGACATCAGTGGC-AGTATTT-------------------------------GGGAAGTTTCAAAAGGTGGTCTTTATAGCATCTCTTCCTCCAGTCAACAAACACACAGTCTTATATGTTTGTGAGAtacataacacactatgcctaaaacttagtggcttaacccaagactatttatttagctcataattctgtgggtccagcaatatggcctgactcaTGCCTGTGGTGGCTGGCTGGCTATCAGCTAAGATGATGAGGGTAACtggtctagcctgggcttgtttacatggtgacagctgctggattcccaagagcagcaaaagatggcaaac 
    5. 

  5. s mm5.chr6     120816603 357 - 149721531 TTAGTGATTTTTAAAAAAACAGTTACAGTGTCTCACTAATGCTACCTCCATGAGTTCAGCCCATTACTAGTGAGTATTTTTACACCTGTTGGCCTGCCTATAGCTAAACTGGGGGCTTTTTAAATGTAACCCCCTTGCTGTCTCTTCCTGCAG----CAAGCACACGATCTTAGAG--TCATGAGTAACACCGCAAACTGGCCCCAAGGCTTG-------AAACAACAGCCAGGTTTCCAGATCACGGTTCAGTGGATC-AATGGCATAGCCTTATTCCTG-----AGTGGC-AACTGACTGCCAGCTGCAGTCAAGATAGTAACTGGACCACCCTCG-TTTGTTTCCATGGTGACAG----------------AACAGCAAACGAGAGTGGAG 
    6. 

  6. s rn3.chr4     131192656 282 - 187371129 TTAGTGAGTATT-------------------GTTA-------TACC--CAT-----TGGGCTGTCTACAGCTAGACTCC---------------------------------GAACCTTTTAAAGGTAATCCTCTTGCCGTCTCTTCCTGGAG----CAAACACACAATCTTAGAG--TCATGAGTGACACCGCAAACTGGCCCCA----------------------GCCAAATTCCTAGATCAAGGTTCAGTGGATC-AATGGTATGGCCTTATTCCTGTGAGTGGCAGCTAGCTGAC-AGCTGCTGTGATCAAGATAGTAACTGGGCTAGCCTGTGTTTGTCTCCATAGTGACAG----------------AACAGCAAATGAGAGTGAAG 
    7. 

  7. 

  8. a score=8157.0
    9. 

  9. s hg17.chr7     31156555 58 - 158628139 CCTCTTCCACTATAGACCTCCTTAAACAAAATAATGAAAAATGAATAAACCACAAATT 
    10. 

  10. s panTro1.chr6  31691510 58 - 161576975 CCTCTTCCACTATAGACCTCCTTAAACAAAATAATGAAAAACGAATAAACCACAAATT 
    11. 

  11. s mm5.chr6     120816549 54 - 149721531 CCTCTTCCACTGAGGAATTTCTTTTTTTAAATGATGAGCAATCAATGAAACG----TT 
    12. 

  12. 

  13. a score=43613.0
    14. 

  14. s hg17.chr7      31156451 104 - 158628139 aaaaataaggaagaatttctg-tgtaactgcaagaccattatcacacaataataattccctaacatcgtgaaagctagtctatacaa---aatttccCCAAATATCTC 
    15. 

  15. s panTro1.chr6   31691406 104 - 161576975 aaaaataaggaagaatttctg-tgtaactgcaagaccattatcacacaataataactccctaacatcgtgaaagctagtctatacaa---aatttccCCAAATGTCTC 
    16. 

  16. s mm5.chr6      120812304 102 - 149721531 AAAAGTAAGGGTTTTTTTTTAATTTAACCATAATATCACTATCAAACAATAGCAATTCTTTAAGATCATGAAAG------TATACATCGTATTTCCCCCAAATGTCTC 
    17. 

  17. s rn3.chr4      131188834  99 - 187371129 ACAACTAAG--ATTTTTTTTA-TTTAACCATAAGATCACTATCAAACAGTAGCAATTCTTTAAGATCATGGAAG------TGCACATCATATTTCCCCCAAATATCTC 
    18. 

  18. s canFam1.chr14  10685009 108 +  63549963 AAAAATAAGGAAGCATTTCCCCCATAACCACGAGACTATCATCAGACAATTATAATTTCTTAGCATCACAAAAGAGCAACACTACATTCAAATTCCCCCAAATATCTC 
    19. 

  19. 

  20. a score=63217.0
    21. 

  21. s hg17.chr7      31156268 183 - 158628139 tttttaaatgaaaaatttaaacatacagaaaagtgtgcaatactatagtgaactacaatatacccatcacctagatttaataattattat-tttccatattt--gcttcatt----------------aattattttgg-----caaaaacattttaaagtgtattgcacacatcatgacatttt---atcccta----ctttggtgc---ttccca 
    22. 

  22. s panTro1.chr6   31691223 183 - 161576975 tttttaaatgaaaattttaaacatacagaaaagtgtgcaatactatagtgaactacaatatacccatcacctagatttaataattattat-tttccatattt--gcttcatt----------------aattattttgg-----caaaaatattttaaagcgtattgcacacatcatgacatttt---atcccta----ctttggtgt---ttccca 
    23. 

  23. s mm5.chr6      120812128 176 - 149721531 TTTTAAAATGAAAATTTCAAACACA----ATAGTGAAAAATAATATAGTGAGTTA-----TACTTATTACCCATATGTAATAATTGCTAT-TTCCCATAGTTTAGCCTCAG---------------------GTTTT-------CAAAATTATTTTAAAGCAAATTGCAGACACTATGACATTGTCATACCCCTAAATATTTGAGTAT---TTTATG 
    24. 

  24. s rn3.chr4      131188640 194 - 187371129 TTTTCAAATGAAAAATTCTAAGAAA-------------AATAATATAACGAATTA-----TACTTATTACCCATATGTAACAATTACCAC-TTCCCATAGTGTAGCTTCAGTTTTTCAAAATTATTAAAACTTTTTTAAATATTTAAAAAT-CTTTAAAGCAAATTGCAGACACTGTGACATTGTCACGCCCCTAAATATTTGAGTAT---TTTCTA 
    25. 

  25. s canFam1.chr14  10684651 163 +  63549963 TTTTTAAATGAAAATTTCAAACATATGGAAAAG---------------------------TATGCAtcacctagatttaatgattattgtcttcccatattt--gcttcatt----------------tact-ttttgg-----ctaaaatattttaaagccaattgcaaacatcatgacatttc---atccttaaatacttcagtttgtgtctcta 
    26. 

  26. 

  27. a score=8913.0
    28. 

  28. s hg17.chr7      31156227 40 - 158628139 tgctatgctcctagctcatagcctggtgtcta-----gctcaaag 
    29. 

  29. s panTro1.chr6   31691182 40 - 161576975 tgctatgctcctagctcatagcctggtgtcta-----gctcaaag 
    30. 

  30. s mm5.chr6      120810825 44 - 149721531 CGCTGTA-TCCAATTTAAGAGCTCAGTGCCTACCTAAGCACAAAG 
    31. 

  31. s canFam1.chr14  10684385 40 +  63549963 tgctatatacccagctcatagtccaggatcta-----gcaTGATG 
    32. 

  32. 

  33. a score=91878.0
    34. 

  34. s hg17.chr7      31155892 335 - 158628139 tcccggtacttttccagtgccaagaacacatgggtgcc-cagggaaaatttgctgaatTGAACCCCAGGAACAACACACACCATAGAGATGATT-TTTGTTATGTGTTATATTCATGT-ACCACTATACAGGGATTCCTCTAGACGCAAGGCCACTGGGAAGG------TAAATGTTTAAAACTTGGGAAAACACACCTGCAGTGATGATG---CGGAGGGAACAGGAAAAGCCAGGATCACA-CAGGTCCTGGAGACCACAGTCACATTGCATTCGAGGCTTCCTAATGGAAACATGTTTCCCAGagaatgtgcattcttt-gag--------------------------------------------------ttggtaggagtctat----------------------------------------------------------------------------------------------ttggtcat 
    35. 

  35. s panTro1.chr6   31690847 335 - 161576975 tcccggtacttttccagtgccaagaacacatgggtgcc-caggaaaaatttgctgaatTGAACCCCAGGAACAACACACACCATAGAGATGATT-TTTGTTATGTGTTATATTCATGT-ACCACTATACAGGGATTCCTCTAGACGCAAGGCCACTGGGAAGG------TAAATGTTTAAAACTTGGGAAAATACACCTGCAGTGATGATG---CAGAGGGAACAGGAAAAGCCAGGATCACA-CATGTCCTGGAGACCACAGTCACATTGCATTCGAGGCTTCCTAATGGAAACATGTTTCCCAGagaatgtgcattcttt-gag--------------------------------------------------ttggtaggagtctat----------------------------------------------------------------------------------------------ttggtcat 
    36. 

  36. s mm5.chr6      120810475 350 - 149721531 TCCTGGTGCCTTCACAGCACCAA----------------CAGGAAAGATTTGCAGAGGTGACTTCCAG-ATTACCATGCACCACCCGGCTG------------------------TGC-ACTTCACTATGAATATTCTTCTAGATTTGAGGC-ACTGGAAAGGAGGGGGTACTTTCTTTAAACTTGAGGAAATATATTCGTGGTAATGATG---TGAAAGAAACCAGGAAAACCAGGTTTAAGGCGGGGCCTGGG--CAACTGTCATAGTGTACTTGGGACTTTCTAGCGGATGCATGTTCCTCAAAGACAACCCACCCTGT-GAGGCTATAGGTTTTTTTGGTTTTTGGTTTTTGGTTTTTTTGTTTGTTTGTTTTTTGTTGTTGTTTTT----------------------------------------------------------------------------------------------TTGCTCAT 
    37. 

  37. s rn3.chr4      131187261 420 - 187371129 ACCTGGTACCTTCACAGCACCAACACCATGTAGGTTCCCCGGGAAAGGTTTGCTGAGGTGACTTCCGG-GATACCATATACCACACAGCTG---------------TCGGGTTAGTGT-ACATCATTATGAATGTGCTTCTAGATCTAGGGC-ACTGGAAAGGAGTGG-GACTTCTTTTAAACCTGAGAAAATGTATTTGTGGTAATGGTG---TGAAAGAAACCAGGAAGACCAGGTTCAAGGTGGTGCCTGGGGGCAACCATCACATTGTATTTGAGACTTCCTAGGGTTAGCACGCTCCTCAAAGACAACCCACCCTGT-GAG--------------------------------------------------GTTATAGGTTTCTGCCCAGCACTGTTAAGAGCTCAGCACCTACCTAGCACAAAGCTAGATTATCTTTTTATGTCTCCATTCACAATGCTATACATGTAAACAGTGTATATTGGTCAT 
    38. 

  38. s canFam1.chr14  10684049 336 +  63549963 TCCTGGTACGTTTGCAGTGCCAGGTGCAT----GTGCT-CAGAAGAAGTTTCCCGAACAGAACCTCAGGGGCAACATGCACCACAGAACTGATTATTTCTGACCTTCAGTATTAGTGCCACCATAGTGGGGGGACTCCTCTAGACTCAAGGCCACCGGGAAG-------CAGATATTTAAAATGTGGGAAAACACACCTGCAGTGATGATGGTGTGGAGGGGACATGGAACGGTAGGCTGACA-TAGGTCCTGGCGGC-ACCATCAGATCACATTGGAGACTTTCTTATGGAAACATGTTCCCCAAAGGTtgtgtgctccatcaag--------------------------------------------------actgcagggctctgtt---------------------------------------------------------------------------------------------ttgttcac 
    39. 

  39. 

  40. a score=82819.0
    41. 

  41. s hg17.chr7      31155458 423 - 158628139 acaggaaatttgcatttctgtgtct----ataaagttttgaattctgtcaacaaaaaattgtgta---aattgtttattcttgttgtataagtacccatgtaatatcctca-attttgc--cttggcttagaaagcctaaaatgttttctacctggccctt-tagagaaagttc-ccagcccttgAACCAGGGAACACACATACATTG-------CACATTGATTCCTCCAGGCCTTTTTTCTTTCCAGTCCGTCTGTGGGGATGCCCAACTGTGCATCCATCGCTTCTCCCGGAAGAATCTCCCC-ATTCCACTAGGGCCTCTCCATCCT---TAAAGAAGCTTTTCCTAGTTCCCCTTGCAGCTAATTCCTGTCTCTCAGTCTGGGTTGGGTG-CCCCTTTCCAtctcctcccttaggtttta---agaggacagggat-tgggccatc 
    42. 

  42. s panTro1.chr6   31690413 423 - 161576975 acaggaaatttacatttctgtgtct----ataaagttttgaattctgtcaacaaaaaattgtgta---aattgtttattcttgttgtataagtacccatgtaatatcctca-attttgc--cttggcttagaaagcctaaaatgttttctacctggccctt-tagagaaagttc-ccagcccttgAACCAGGGAACACACATACATTG-------CACATTGATTCCTCCAGGCCTTTTTTCTTTCCAGTCCGTCTGTGGGGATGCCCAACTGCGCATCCATCGCTTCTCCCGGAAGAATCTCCCC-ATTCCACTAGGGTCTCTCCATCCT---TAAAGAAGCTTTTCCTAGTTCCCCTTGCAGCTAATTCCTGTCTCTCAGTCTGGGTTGGGTG-CCCCTTTCCAtctcctcccttaggtttta---agaggacagggat-tgggccatc 
    43. 

  43. s mm5.chr6      120810130 334 - 149721531 TTAAGAAATTAAAACTTTAGCATCCTCAAATAAAGTTCTGAATTTGGTCAACCAAAAATTGT-------CTTGTTTTCTCTTGT---ATAAGTACCCACGGGGTAACCTTT-ATTTCCC-TCTTGGCCTGCCAAGCGAGAATTGTTTGCTAACCTGC---------------------------AAACTATGAAACCTACACACACC--------TGCGCTGGCTGCTCCTGGCTCCCAGTCCTGCCCGTCTCT-TATGGGCGTTCCTGGAGTCAGGTCCATCCCTTCTGCCCACAGAACCCCCCCTGTTTTGCATAGGCCCTGCTCTCCA-----------------------CCACTGGCAG---------GCTTCCTTGTCTA---TGGAC----------------------------------AGAGAACAGAGCCCTCTGCCATT 
    44. 

  44. s rn3.chr4      131186910 340 - 187371129 AAAAGAAATTTAAACTTTAGCATCCTCAAATAAAGTTCTGAATTTGGTCAACCAAAAATTGT-------CTTGTTTTCTCTTGT---GTAAGCACTCACGGGGTCACCTTC-AGTTTCC-TCTTGGCCTGCAAAGCAGGAATTGTTTGCCAACCTGC---------------------------AAACTATGAAATATACACACGCCCGCACACCTGCGCTGGCTTCTCCTGGGTCTCAGTCCTGCCAGCCTCTCTATGGCTATGTCCGGAGGCTAGTCCATCCCTTCTGCCTACAGAAGCCCCCT-CTTTTGCATAGGCCCTGCTCTCCA---T----------------------CTGAGAG---------GCTTCTTTGACTA---TGGAC----------------------------------AGAGAACAGGGGCCTCTGCCATT 
    45. 

  45. s canFam1.chr14  10683450 405 +  63549963 atatgaagtttacattttggcatccctaagtaaagttttgaattttatc--caaaaaattccgggggcaacttttccctcttgt---------acctac---ataccctctgatgtcgcctcttggtctgaaaagcctaaaatgtttatcatcccacccttagagagaaagtttgccaacccTGGAACTAGAAAA------TACATTG-------CACGTTAGCTCTTCTGGGTCTTTATTCCTGCCAGTC-GTGGGCGGGCATGCAGGACTGCTCAATCAGGCCTTCTCCAAGCA--------CC---------GGGGTCTCTTCTTCCTGGTTGAAGTAGCTTGTCCTGGTCACCTTTCCAGCCAACTCCCCTCATTCCAACTGGCTTGCGTGACCTCTTCCCACCTCTGCCCACAGGCTGTAAGTGGAAGGCAGGCAT-CAAGTCTCC 
    46. 

  46. 

  47. a score=15522.0
    48. 

  48. s hg17.chr7     31154233 97 - 158628139 gcaaatgacgttggtgaaccgagcctg-ccactgccgggtttggtaatgcccaaaagctaagaatggtttctacatttgtaaaagtttgaaaaaaaaa 
    49. 

  49. s panTro1.chr6  31689192 97 - 161576975 GCAAATGATGTTGGTGAACCGAGCCTT-ccactgccgggtttggtaatgcccaaaagctaagaatggtttctacatttgtaaaagtttgaaaaaaaaa 
    50. 

  50. s canFam1.chr14 10683318 97 +  63549963 gcaagttatgtgggtgagccaaatccgaccaccaccaggaccaccatggccccga-gctaggaatggtttttgcatttttaaagagttgaaaaatata 
    51. 

  51. 

  52. a score=28088.0
    53. 

  53. s hg17.chr7    31153902 331 - 158628139 agccaggcgtggtagctcaagcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggatttcgagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaattagccaggtgtggtggtgagtgtctgtaatcccagctacttgagaggctgaggcaggagaatggcttgaacctgggaagtggaggttgcagtgagccaagatcagaccattgcactacagcctgggcaacaagagtgaaactctgtctcaat-aaaaaaaacaaaacaaaacaaaacCCATAACATAAAGcggggaact 
    54. 

  54. s panTro1.chr6 31688874 318 - 161576975 agccaggcgtggtagctcaagcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggatttcgagaccagcctggccaacatgatgaaacctcatctctactaaaaatacaaaattagccaggtgtggtggtgagtgtctgtaatcccagctacttgagaggctgaggcaggagaatggcttgaacctgggaagtggaggttgcagtgagcca--------------cactacagcctgggcaacaagagtgaaactctgtctcaataaaaaaaaaaaaaaaaaaaaaaaaCCCATAATATAAAGCGGGGAACT
    55.