/test-data/blat_wrapper_test1.fa

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 200 lines · 200 code · 0 blank · 0 comment · 0 complexity · 8575cec2bde56efd9a24c302cf9b659b MD5 · raw file 

    

  1. >0_0.666667
    2. 

  2. CGGACAGCGCCGCCACCAACAAAGCCACCA
    3. 

  3. >1_0.600000
    4. 

  4. AAAACACCGGATGCTCCGGCGCTGGCAGAT
    5. 

  5. >2_0.400000
    6. 

  6. TTTGCTTTTAGTACACCGGATTCAGAACCA
    7. 

  7. >3_0.566667
    8. 

  8. CCGTCCCCATGAATACACCTTTCTGGACGG
    9. 

  9. >4_0.766667
    10. 

  10. CACGCTACGTGCGCCCCCGCCCAGAAGGCG
    11. 

  11. >5_0.533333
    12. 

  12. AAACAAAACCCGCCGAAGCGGGTTAAGTGC
    13. 

  13. >6_0.533333
    14. 

  14. TAAGCCGTTACTGGCAGCAAGTGCAGGCAA
    15. 

  15. >7_0.400000
    16. 

  16. TGAATTTACCGTTATCTATCTTGCCTGCCT
    17. 

  17. >8_0.500000
    18. 

  18. TTAGCGGGAATAAAACAGGCTGTCAGCCAG
    19. 

  19. >9_0.400000
    20. 

  20. GCGTTTTGCTAAACTTCTGCCGGAATATAA
    21. 

  21. >10_0.500000
    22. 

  22. AAAGAGGCGAGCAGAGTAAAACGCAGGCAA
    23. 

  23. >11_0.533333
    24. 

  24. CAAAAGCAGAGTCTGTTGACCCATACGCGC
    25. 

  25. >12_0.700000
    26. 

  26. GCGGACGATCTTCACGGTCGCCACGCGGAC
    27. 

  27. >13_0.533333
    28. 

  28. TTCTTGTTGGATGGCATACTCCGGCAGCCA
    29. 

  29. >14_0.666667
    30. 

  30. ACCCCGATATCGTCGCAGGCGTTGCCGCAC
    31. 

  31. >15_0.666667
    32. 

  32. GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC
    33. 

  33. >16_0.566667
    34. 

  34. ATGTCCTGATCGAGCGGCGTTTTACCGACC
    35. 

  35. >17_0.533333
    36. 

  36. GGTGTTGAGTGTCCAGGTAATACGCTCTCG
    37. 

  37. >18_0.566667
    38. 

  38. GTGGTCTCAAGCCCAAAGGAAGAGTGAGGC
    39. 

  39. >19_0.566667
    40. 

  40. GTTGTAAGCGTCAGAACCGATGCGGTCGGT
    41. 

  41. >20_0.566667
    42. 

  42. CGACATCCTGTAGGCTGGCTTCAATGCGAC
    43. 

  43. >21_0.733333
    44. 

  44. GGGAAGGCTGACGGGCGTCCACACCACGGC
    45. 

  45. >22_0.566667
    46. 

  46. CGGTATTCCTCAGTTCTCGCTGCATGCCTG
    47. 

  47. >23_0.600000
    48. 

  48. TTGCCGTTACGCACCACGCCTTCAGTAGCG
    49. 

  49. >24_0.733333
    50. 

  50. CGCGGGCGCACCACGTCGCTGCTGCTGTTC
    51. 

  51. >25_0.266667
    52. 

  52. TTTTGGGAAAACTAAATACGCATCAAAAAT
    53. 

  53. >26_0.566667
    54. 

  54. CAACGAGGCGCTACCGAGTTGTTCAATGCG
    55. 

  55. >27_0.600000
    56. 

  56. TTACCGAGGCCAGAACCGATACCACGACCC
    57. 

  57. >28_0.666667
    58. 

  58. CGCTCAATCTGCTCGCGCCTGGCTGGCGTT
    59. 

  59. >29_0.700000
    60. 

  60. CTCGTCCGGCGGGCGGTTTTGCCGACAAGG
    61. 

  61. >30_0.233333
    62. 

  62. GGAAATTGTACAATAGAAAAATTACTGTAT
    63. 

  63. >31_0.533333
    64. 

  64. GTGCTGAACTGTTCCACGACCATGGAGATG
    65. 

  65. >32_0.600000
    66. 

  66. TGAGGATGGTCCTCTGACTCTGCAGGCGCA
    67. 

  67. >33_0.300000
    68. 

  68. TAGTAACCCTTTAATAAGATTGTCGATTAG
    69. 

  69. >34_0.533333
    70. 

  70. TGATGTTAAATGCATGGCACCTGCCGGTGC
    71. 

  71. >35_0.466667
    72. 

  72. ACTGCTTTGCCGAGATATTCGAGGTTAACC
    73. 

  73. >36_0.433333
    74. 

  74. TGTTGGCAACATGGCGAGCGTAATCAATTA
    75. 

  75. >37_0.366667
    76. 

  76. ACTTCGTCAGTAAGGATGAGATTAGCAAAT
    77. 

  77. >38_0.533333
    78. 

  78. GCAGCAGGATCGGATCGAACTCTGGTTTCT
    79. 

  79. >39_0.400000
    80. 

  80. TAATGCGGCATTCTCCTGATTTATTGTCAC
    81. 

  81. >40_0.400000
    82. 

  82. AGCGTAATGATAATCGCTATCACTGCGATT
    83. 

  83. >41_0.566667
    84. 

  84. AGCTGACGGTCAGCAGGGATACTTCCTGCA
    85. 

  85. >42_0.566667
    86. 

  86. GCAGTGACTACATCCGCGAGGTGAATGTGG
    87. 

  87. >43_0.466667
    88. 

  88. GCTTTTTCCAGCATCAACGCCACTGAACAA
    89. 

  89. >44_0.433333
    90. 

  90. AAAGTGGTAGATAACGTGGTGCAGACTATG
    91. 

  91. >45_0.500000
    92. 

  92. TTCCTGATACCGGATGACCTTATCGCGGAT
    93. 

  93. >46_0.466667
    94. 

  94. ACCTGTACCCCAGGACCATGGTACATTTAT
    95. 

  95. >47_0.533333
    96. 

  96. ACAATGCAACCAGACCAGCCCGGATCGATA
    97. 

  97. >48_0.500000
    98. 

  98. GGGTAACCAGCTGATGATGGCCATTAACCT
    99. 

  99. >49_0.433333
    100. 

  100. CGTTATACGGAACAACATTTAACTCCAGCG
    101. 

  101. >50_0.466667
    102. 

  102. TTGCTGTTGCCATCGCTTTTCAGGACATAC
    103. 

  103. >51_0.533333
    104. 

  104. CGACGGTATCGGTACGCAGATTGTGATGGA
    105. 

  105. >52_0.366667
    106. 

  106. ATGAGCATCAACATCGAAATCTCAAACCAA
    107. 

  107. >53_0.533333
    108. 

  108. CCAGGCACTCCGCCATATTTTTGCCATGAC
    109. 

  109. >54_0.400000
    110. 

  110. GTATTCTTCATTGATTTGTAAGCGGGTACC
    111. 

  111. >55_0.466667
    112. 

  112. AAGCGCTGTTCAACATAAATTGGCTGACGG
    113. 

  113. >56_0.433333
    114. 

  114. AACCGTCAGCTCTTTACGCAATATTTTGCC
    115. 

  115. >57_0.566667
    116. 

  116. CGCGAAATCCTCGACGTCCAGGCACGTATT
    117. 

  117. >58_0.300000
    118. 

  118. GTTATCCATTAAAATAGATCGGATCGATAT
    119. 

  119. >59_0.300000
    120. 

  120. AAAATCTGCATATCATGATAAGAGTGGTTA
    121. 

  121. >60_0.533333
    122. 

  122. AATCTGGCGAATGCTGATAGCGTGACCGGT
    123. 

  123. >61_0.366667
    124. 

  124. TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT
    125. 

  125. >62_0.366667
    126. 

  126. AATCCTAAACCTAGGAATGCCAGAATATCT
    127. 

  127. >63_0.566667
    128. 

  128. TCACGCTCGCAGTCAAGCTGGCTTATGCCA
    129. 

  129. >64_0.500000
    130. 

  130. GAGATGACGGTTGCAGAGTCATGCGTTTGA
    131. 

  131. >65_0.533333
    132. 

  132. TCTGGATCACGCGCAAACACTGGCTATCGT
    133. 

  133. >66_0.466667
    134. 

  134. TCTGCTTTAGCAAACAGAGTGTGGTCACGA
    135. 

  135. >67_0.400000
    136. 

  136. GCCTTTTGTCTGATCATCCACAATAATGAC
    137. 

  137. >68_0.566667
    138. 

  138. GAAGGATAGTTGGTCAGCAACACCAGCGGC
    139. 

  139. >69_0.733333
    140. 

  140. GGCGCGCTGTCGGCCACGGCGAAATCGACC
    141. 

  141. >70_0.466667
    142. 

  142. TGGTGTTCAGCATCTCAACGGTAATTCGCT
    143. 

  143. >71_0.533333
    144. 

  144. CAGGATGCAAACTGCCGGGAGATCCAGTTA
    145. 

  145. >72_0.533333
    146. 

  146. AACTGGAAGGGCTTGGGATGACACAACAGC
    147. 

  147. >73_0.500000
    148. 

  148. TTTAAGCGCCAACCAGGCTTCTTTGGTTGC
    149. 

  149. >74_0.433333
    150. 

  150. ACCCTTCTTTCGCCATATCAAACTGATGTC
    151. 

  151. >75_0.533333
    152. 

  152. ATAACCCTCTGCAACCGCCGCTTCAGCAAA
    153. 

  153. >76_0.600000
    154. 

  154. TGAAGCCGTACAACGGGCGCTGGAATTCGC
    155. 

  155. >77_0.700000
    156. 

  156. GAGCTGCAACGCGGTCAGCCAGCTGGCGGT
    157. 

  157. >78_0.566667
    158. 

  158. CGGAGTATCCGTTCCCCAACGACAAGCATC
    159. 

  159. >79_0.500000
    160. 

  160. AATACCGGGAAGAGACAACGGGGTCTCTTT
    161. 

  161. >80_0.500000
    162. 

  162. TAATGACAGGGTTGCGAAGCCCTGATTCTC
    163. 

  163. >81_0.433333
    164. 

  164. ATTAATGTTGCCGGCACAACATAATAGGGC
    165. 

  165. >82_0.500000
    166. 

  166. ACTGGGTTGCTCTGAACAAGAAAGGCGCTA
    167. 

  167. >83_0.533333
    168. 

  168. CGCCAGGGACGTATCGCGTCGATATCTATT
    169. 

  169. >84_0.533333
    170. 

  170. TGCTCGTTCCCGTCGTGATGAAGCTCGAAA
    171. 

  171. >85_0.500000
    172. 

  172. AGGAAAGCAAACAACACGACCACCATCAGC
    173. 

  173. >86_0.566667
    174. 

  174. GGCAACGCAGGCGCATGATTCTGCTTGGAA
    175. 

  175. >87_0.433333
    176. 

  176. CGCTGGATGAAAANCGTGAATATCACACCA
    177. 

  177. >88_0.533333
    178. 

  178. CGTACCGGGCTGAAAGTAGAAGAGCGTTTC
    179. 

  179. >89_0.466667
    180. 

  180. ATTAAAAAACAGGCGGTGCGTTTTCCCTGG
    181. 

  181. >90_0.466667
    182. 

  182. ATCACCGTTTCGCTAACCGGTACGTTTAAC
    183. 

  183. >91_0.566667
    184. 

  184. TTCGCCCGGCAAGCTTACCCAACGCTTATC
    185. 

  185. >92_0.533333
    186. 

  186. TTTTCCCCGCCGTTAGTAGCGACTGCAGTT
    187. 

  187. >93_0.400000
    188. 

  188. TTATTTGCCCGATGAGTCAGTTTATTGCAG
    189. 

  189. >94_0.466667
    190. 

  190. CCACGGTGATATCTGGTGCCATACTGATAA
    191. 

  191. >95_0.466667
    192. 

  192. TCCCCCGTAAGGCCTTTCTTTTTCTTTCGT
    193. 

  193. >96_0.533333
    194. 

  194. TTGCCGGGAAGAGAGATATCAATGGCAGGC
    195. 

  195. >97_0.566667
    196. 

  196. TGCGCCGCCGGATTGTTGCTCAACATGCTT
    197. 

  197. >98_0.366667
    198. 

  198. AACGCGCTAACCGCCAATAATAACAAAATT
    199. 

  199. >99_0.366667
    200. 

  200. TAAGAGTTTATTCATGATGTCATCCTGCGA
    201.