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/test-data/ortho_ms.tab

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 151 lines | 151 code | 0 blank | 0 comment | 0 complexity | 62f381a155bed4e32fbccc500be31f06 MD5 | raw file
  1#Block	Seq1_Name	Seq1_Start	Seq1_End	Seq1_Type	Seq1_Length	Seq1_RepeatNumber	Seq1_Unit	Seq2_Name	Seq2_Start	Seq2_End	Seq2_Type	Seq2_Length	Seq2_RepeatNumber	Seq2_Unit
  25	hg18.chr1	6483	6496	trinucleotide	13	4	GCT	panTro2.chr15	100042575	100042588	trinucleotide	13	4	GCT
  35	hg18.chr1	7111	7119	dinucleotide	8	4	CT	panTro2.chr15	100043212	100043220	dinucleotide	8	4	CT
  45	hg18.chr1	6483	6496	trinucleotide	13	4	GCT	panTro2.chr15	100042575	100042588	trinucleotide	13	4	GCT
  55	hg18.chr1	7111	7119	dinucleotide	8	4	CT	panTro2.chr15	100043212	100043220	dinucleotide	8	4	CT
  69	hg18.chr1	11258	11267	dinucleotide	9	4	CT	panTro2.chr9_random	4677431	4677440	dinucleotide	9	4	CT
  710	hg18.chr1	11881	11889	dinucleotide	8	4	TC	panTro2.chr15	100031465	100031473	dinucleotide	8	4	TC
  810	hg18.chr1	18275	18284	mononucleotide	9	9	A	panTro2.chr15	100037854	100037863	mononucleotide	9	9	A
  910	hg18.chr1	11881	11889	dinucleotide	8	4	TC	panTro2.chr15	100031465	100031473	dinucleotide	8	4	TC
 1010	hg18.chr1	16317	16329	dinucleotide	12	6	GT	panTro2.chr15	100035910	100035921	dinucleotide	11	5	TG
 1110	hg18.chr1	18275	18284	mononucleotide	9	9	A	panTro2.chr15	100037854	100037863	mononucleotide	9	9	A
 1210	hg18.chr1	18452	18467	mononucleotide	15	15	T	panTro2.chr15	100038029	100038042	mononucleotide	13	13	T
 1312	hg18.chr1	20736	20756	dinucleotide	20	10	TC	panTro2.chr15_random	1091184	1091198	dinucleotide	14	7	TC
 1413	hg18.chr1	20799	20812	dinucleotide	13	6	TC	panTro2.chrUn	1510811	1510831	dinucleotide	20	10	TC
 1513	hg18.chr1	21563	21572	dinucleotide	9	4	AG	panTro2.chrUn	1511572	1511581	dinucleotide	9	4	AG
 1613	hg18.chr1	21671	21681	dinucleotide	10	5	AC	panTro2.chrUn	1511678	1511688	dinucleotide	10	5	AC
 1714	hg18.chr1	23313	23328	mononucleotide	15	15	A	panTro2.chrUn	1508926	1508942	mononucleotide	16	16	A
 1816	hg18.chr1	26215	26228	mononucleotide	13	13	A	panTro2.chrUn	135175	135189	mononucleotide	14	14	A
 1916	hg18.chr1	26657	26667	dinucleotide	10	5	TG	panTro2.chrUn	135618	135628	dinucleotide	10	5	TG
 2016	hg18.chr1	27104	27114	mononucleotide	10	10	T	panTro2.chrUn	136064	136073	mononucleotide	9	9	T
 2116	hg18.chr1	27291	27299	dinucleotide	8	4	CT	panTro2.chrUn	136251	136259	dinucleotide	8	4	CT
 2216	hg18.chr1	30483	30495	trinucleotide	12	4	TTC	panTro2.chrUn	139435	139447	trinucleotide	12	4	TTC
 2316	hg18.chr1	30503	30522	mononucleotide	19	19	T	panTro2.chrUn	139457	139482	mononucleotide	25	25	T
 2416	hg18.chr1	26657	26667	dinucleotide	10	5	TG	panTro2.chrUn	135618	135628	dinucleotide	10	5	TG
 2516	hg18.chr1	27104	27114	mononucleotide	10	10	T	panTro2.chrUn	136064	136073	mononucleotide	9	9	T
 2616	hg18.chr1	27291	27299	dinucleotide	8	4	CT	panTro2.chrUn	136251	136259	dinucleotide	8	4	CT
 2716	hg18.chr1	30483	30495	trinucleotide	12	4	TTC	panTro2.chrUn	139435	139447	trinucleotide	12	4	TTC
 2817	hg18.chr1	33660	33676	mononucleotide	16	16	A	panTro2.chrUn	9698149	9698162	mononucleotide	13	13	A
 2917	hg18.chr1	33660	33676	mononucleotide	16	16	A	panTro2.chrUn	9698149	9698162	mononucleotide	13	13	A
 3019	hg18.chr1	35586	35595	dinucleotide	9	4	AT	panTro2.chrUn	9700318	9700327	dinucleotide	9	4	AT
 3119	hg18.chr1	36427	36435	dinucleotide	8	4	GT	panTro2.chrUn	9701160	9701168	dinucleotide	8	4	GT
 3219	hg18.chr1	37182	37192	mononucleotide	10	10	A	panTro2.chrUn	9701917	9701928	mononucleotide	11	11	A
 3319	hg18.chr1	37620	37628	dinucleotide	8	4	TA	panTro2.chrUn	9702357	9702365	dinucleotide	8	4	TA
 3419	hg18.chr1	41199	41207	dinucleotide	8	4	CT	panTro2.chrUn	9705949	9705957	dinucleotide	8	4	CT
 3519	hg18.chr1	41728	41741	mononucleotide	13	13	A	panTro2.chrUn	9706479	9706495	mononucleotide	16	16	A
 3619	hg18.chr1	35586	35595	dinucleotide	9	4	AT	panTro2.chrUn	9700318	9700327	dinucleotide	9	4	AT
 3719	hg18.chr1	36427	36435	dinucleotide	8	4	GT	panTro2.chrUn	9701160	9701168	dinucleotide	8	4	GT
 3819	hg18.chr1	37182	37192	mononucleotide	10	10	A	panTro2.chrUn	9701917	9701928	mononucleotide	11	11	A
 3919	hg18.chr1	37620	37628	dinucleotide	8	4	TA	panTro2.chrUn	9702357	9702365	dinucleotide	8	4	TA
 4019	hg18.chr1	41199	41207	dinucleotide	8	4	CT	panTro2.chrUn	9705949	9705957	dinucleotide	8	4	CT
 4119	hg18.chr1	41728	41741	mononucleotide	13	13	A	panTro2.chrUn	9706479	9706495	mononucleotide	16	16	A
 4221	hg18.chr1	47418	47426	dinucleotide	8	4	TA	panTro2.chrUn	9713027	9713035	dinucleotide	8	4	TA
 4321	hg18.chr1	47950	47959	dinucleotide	9	4	TC	panTro2.chrUn	9713559	9713568	dinucleotide	9	4	TC
 4421	hg18.chr1	47418	47426	dinucleotide	8	4	TA	panTro2.chrUn	9713027	9713035	dinucleotide	8	4	TA
 4521	hg18.chr1	47950	47959	dinucleotide	9	4	TC	panTro2.chrUn	9713559	9713568	dinucleotide	9	4	TC
 4625	hg18.chr1	56744	56752	dinucleotide	8	4	GA	panTro2.chrUn	9723923	9723931	dinucleotide	8	4	GA
 4725	hg18.chr1	60215	60224	mononucleotide	9	9	A	panTro2.chrUn	9727396	9727405	mononucleotide	9	9	A
 4825	hg18.chr1	56744	56752	dinucleotide	8	4	GA	panTro2.chrUn	9723923	9723931	dinucleotide	8	4	GA
 4925	hg18.chr1	60215	60224	mononucleotide	9	9	A	panTro2.chrUn	9727396	9727405	mononucleotide	9	9	A
 5025	hg18.chr1	61039	61050	mononucleotide	11	11	A	panTro2.chrUn	9728220	9728230	mononucleotide	10	10	A
 5125	hg18.chr1	61710	61725	mononucleotide	15	15	T	panTro2.chrUn	9728890	9728903	mononucleotide	13	13	T
 5226	hg18.chr1	67953	67961	dinucleotide	8	4	AT	panTro2.chrUn	9735669	9735677	dinucleotide	8	4	AT
 5326	hg18.chr1	68606	68614	dinucleotide	8	4	AT	panTro2.chrUn	9736324	9736332	dinucleotide	8	4	AT
 5426	hg18.chr1	67038	67059	mononucleotide	21	21	A	panTro2.chrUn	9734760	9734777	mononucleotide	17	17	A
 5526	hg18.chr1	67953	67961	dinucleotide	8	4	AT	panTro2.chrUn	9735669	9735677	dinucleotide	8	4	AT
 5626	hg18.chr1	68606	68614	dinucleotide	8	4	AT	panTro2.chrUn	9736324	9736332	dinucleotide	8	4	AT
 5727	hg18.chr1	72077	72088	dinucleotide	11	5	AC	panTro2.chrUn	9742946	9742957	dinucleotide	11	5	AC
 5832	hg18.chr1	81043	81052	dinucleotide	9	4	GA	panTro2.chrUn	1797450	1797459	dinucleotide	9	4	GA
 5939	hg18.chr1	87721	87729	dinucleotide	8	4	AG	panTro2.chr1_random	7074333	7074341	dinucleotide	8	4	AG
 6039	hg18.chr1	88697	88707	dinucleotide	10	5	TG	panTro2.chr1_random	7075309	7075319	dinucleotide	10	5	TG
 6139	hg18.chr1	87721	87729	dinucleotide	8	4	AG	panTro2.chr1_random	7074333	7074341	dinucleotide	8	4	AG
 6239	hg18.chr1	88697	88707	dinucleotide	10	5	TG	panTro2.chr1_random	7075309	7075319	dinucleotide	10	5	TG
 6340	hg18.chr1	91199	91212	mononucleotide	13	13	A	panTro2.chr1_random	7089889	7089900	mononucleotide	11	11	A
 6442	hg18.chr1	93838	93847	dinucleotide	9	4	CT	panTro2.chr1_random	7090757	7090768	dinucleotide	11	5	CT
 6542	hg18.chr1	93838	93847	dinucleotide	9	4	CT	panTro2.chr1_random	7090757	7090768	dinucleotide	11	5	CT
 6643	hg18.chr1	97391	97399	dinucleotide	8	4	AG	panTro2.chr1	244578	244586	dinucleotide	8	4	AG
 6744	hg18.chr1	98409	98425	mononucleotide	16	16	A	panTro2.chr1_random	7095323	7095342	mononucleotide	19	19	A
 6844	hg18.chr1	98409	98425	mononucleotide	16	16	A	panTro2.chr1_random	7095323	7095342	mononucleotide	19	19	A
 6946	hg18.chr1	101851	101859	dinucleotide	8	4	CA	panTro2.chr1_random	7109861	7109869	dinucleotide	8	4	CA
 7047	hg18.chr1	103743	103753	dinucleotide	10	5	CT	panTro2.chr1	250633	250643	dinucleotide	10	5	CT
 7147	hg18.chr1	104174	104182	dinucleotide	8	4	GA	panTro2.chr1	251064	251072	dinucleotide	8	4	GA
 7247	hg18.chr1	107676	107685	dinucleotide	9	4	AG	panTro2.chr1	254594	254603	dinucleotide	9	4	AG
 7347	hg18.chr1	107735	107743	dinucleotide	8	4	AG	panTro2.chr1	254653	254661	dinucleotide	8	4	AG
 7447	hg18.chr1	108222	108231	dinucleotide	9	4	AT	panTro2.chr1	255140	255148	dinucleotide	8	4	AT
 7547	hg18.chr1	108253	108261	dinucleotide	8	4	AT	panTro2.chr1	255171	255179	dinucleotide	8	4	AT
 7647	hg18.chr1	103743	103753	dinucleotide	10	5	CT	panTro2.chr1	250633	250643	dinucleotide	10	5	CT
 7747	hg18.chr1	104174	104182	dinucleotide	8	4	GA	panTro2.chr1	251064	251072	dinucleotide	8	4	GA
 7847	hg18.chr1	107676	107685	dinucleotide	9	4	AG	panTro2.chr1	254594	254603	dinucleotide	9	4	AG
 7947	hg18.chr1	107735	107743	dinucleotide	8	4	AG	panTro2.chr1	254653	254661	dinucleotide	8	4	AG
 8047	hg18.chr1	108222	108231	dinucleotide	9	4	AT	panTro2.chr1	255140	255148	dinucleotide	8	4	AT
 8147	hg18.chr1	108253	108261	dinucleotide	8	4	AT	panTro2.chr1	255171	255179	dinucleotide	8	4	AT
 8248	hg18.chr1	110072	110081	dinucleotide	9	4	TG	panTro2.chr1	258778	258787	dinucleotide	9	4	TG
 8348	hg18.chr1	110072	110081	dinucleotide	9	4	TG	panTro2.chr1	258778	258787	dinucleotide	9	4	TG
 8449	hg18.chr1	111133	111148	mononucleotide	15	15	T	panTro2.chr1	260455	260473	mononucleotide	18	18	T
 8549	hg18.chr1	111503	111515	trinucleotide	12	4	TAA	panTro2.chr1	260828	260846	trinucleotide	18	6	TAA
 8651	hg18.chr1	113280	113290	dinucleotide	10	5	AT	panTro2.chr1_random	8247726	8247736	dinucleotide	10	5	AT
 8755	hg18.chr1	114709	114728	mononucleotide	19	19	A	panTro2.chr1	262958	262973	mononucleotide	15	15	A
 8855	hg18.chr1	115520	115529	mononucleotide	9	9	A	panTro2.chr1	263765	263775	mononucleotide	10	10	A
 8955	hg18.chr1	114709	114728	mononucleotide	19	19	A	panTro2.chr1	262958	262973	mononucleotide	15	15	A
 9056	hg18.chr1	118460	118475	mononucleotide	15	15	T	panTro2.chr1	267602	267617	mononucleotide	15	15	T
 9156	hg18.chr1	119541	119556	mononucleotide	15	15	T	panTro2.chr1	268682	268695	mononucleotide	13	13	T
 9256	hg18.chr1	119775	119783	dinucleotide	8	4	GA	panTro2.chr1	268914	268922	dinucleotide	8	4	GA
 9356	hg18.chr1	123929	123958	mononucleotide	29	29	T	panTro2.chr1	273095	273130	mononucleotide	35	35	T
 9472	hg18.chr1	134751	134763	mononucleotide	12	12	A	panTro2.chr1_random	7189181	7189197	mononucleotide	16	16	A
 9572	hg18.chr1	134994	135006	trinucleotide	12	4	GTG	panTro2.chr1_random	7189427	7189439	trinucleotide	12	4	GTG
 9672	hg18.chr1	135805	135813	dinucleotide	8	4	GT	panTro2.chr1_random	7190238	7190246	dinucleotide	8	4	GT
 9772	hg18.chr1	136433	136442	dinucleotide	9	4	TC	panTro2.chr1_random	7190866	7190875	dinucleotide	9	4	TC
 9872	hg18.chr1	137771	137781	mononucleotide	10	10	A	panTro2.chr1_random	7192213	7192224	mononucleotide	11	11	A
 9972	hg18.chr1	138639	138652	trinucleotide	13	4	AAT	panTro2.chr1_random	7193082	7193095	trinucleotide	13	4	AAT
10072	hg18.chr1	140196	140205	dinucleotide	9	4	AG	panTro2.chr1_random	7194642	7194651	dinucleotide	9	4	AG
10172	hg18.chr1	141348	141361	mononucleotide	13	13	T	panTro2.chr1_random	7195790	7195814	mononucleotide	24	24	T
10272	hg18.chr1	134994	135006	trinucleotide	12	4	GTG	panTro2.chr1_random	7189427	7189439	trinucleotide	12	4	GTG
10372	hg18.chr1	135805	135813	dinucleotide	8	4	GT	panTro2.chr1_random	7190238	7190246	dinucleotide	8	4	GT
10472	hg18.chr1	136433	136442	dinucleotide	9	4	TC	panTro2.chr1_random	7190866	7190875	dinucleotide	9	4	TC
10572	hg18.chr1	138639	138652	trinucleotide	13	4	AAT	panTro2.chr1_random	7193082	7193095	trinucleotide	13	4	AAT
10672	hg18.chr1	140196	140205	dinucleotide	9	4	AG	panTro2.chr1_random	7194642	7194651	dinucleotide	9	4	AG
10772	hg18.chr1	142689	142699	mononucleotide	10	10	T	panTro2.chr1_random	7197149	7197158	mononucleotide	9	9	T
10873	hg18.chr1	145718	145733	mononucleotide	15	15	A	panTro2.chr1_random	7202121	7202135	mononucleotide	14	14	A
10974	hg18.chr1	146143	146155	mononucleotide	12	12	T	panTro2.chr1_random	7208622	7208632	mononucleotide	10	10	T
11074	hg18.chr1	146971	146985	mononucleotide	14	14	A	panTro2.chr1_random	7209449	7209463	mononucleotide	14	14	A
11175	hg18.chr1	150335	150351	mononucleotide	16	16	T	panTro2.chr1_random	7213029	7213047	mononucleotide	18	18	T
11275	hg18.chr1	151431	151440	mononucleotide	9	9	A	panTro2.chr1_random	7214127	7214137	mononucleotide	10	10	A
11375	hg18.chr1	153993	154017	pentanucleotide	24	4	AAAAC	panTro2.chr1_random	7216686	7216711	pentanucleotide	25	5	AAAAC
11475	hg18.chr1	155151	155174	mononucleotide	23	23	A	panTro2.chr1_random	7217843	7217867	mononucleotide	24	24	A
11575	hg18.chr1	156454	156463	mononucleotide	9	9	A	panTro2.chr1_random	7219148	7219157	mononucleotide	9	9	A
11675	hg18.chr1	156998	157017	tetranucleotide	19	4	TTTA	panTro2.chr1_random	7219691	7219710	tetranucleotide	19	4	TTTA
11775	hg18.chr1	151431	151440	mononucleotide	9	9	A	panTro2.chr1_random	7214127	7214137	mononucleotide	10	10	A
11875	hg18.chr1	153993	154017	pentanucleotide	24	4	AAAAC	panTro2.chr1_random	7216686	7216711	pentanucleotide	25	5	AAAAC
11975	hg18.chr1	154537	154559	mononucleotide	22	22	A	panTro2.chr1_random	7217231	7217251	mononucleotide	20	20	A
12075	hg18.chr1	156454	156463	mononucleotide	9	9	A	panTro2.chr1_random	7219148	7219157	mononucleotide	9	9	A
12175	hg18.chr1	156998	157017	tetranucleotide	19	4	TTTA	panTro2.chr1_random	7219691	7219710	tetranucleotide	19	4	TTTA
12276	hg18.chr1	159723	159736	mononucleotide	13	13	T	panTro2.chr1	224074251	224074269	mononucleotide	18	18	T
12376	hg18.chr1	160798	160818	pentanucleotide	20	4	GTTTT	panTro2.chr1	224075335	224075355	pentanucleotide	20	4	GTTTT
12476	hg18.chr1	159723	159736	mononucleotide	13	13	T	panTro2.chr1	224074251	224074269	mononucleotide	18	18	T
12576	hg18.chr1	160798	160818	pentanucleotide	20	4	GTTTT	panTro2.chr1	224075335	224075355	pentanucleotide	20	4	GTTTT
12677	hg18.chr1	163076	163084	dinucleotide	8	4	AT	panTro2.chr1_random	7293459	7293467	dinucleotide	8	4	AT
12777	hg18.chr1	165179	165187	dinucleotide	8	4	GC	panTro2.chr1_random	7295617	7295625	dinucleotide	8	4	GC
12877	hg18.chr1	165310	165322	mononucleotide	12	12	A	panTro2.chr1_random	7295748	7295770	mononucleotide	22	22	A
12977	hg18.chr1	163076	163084	dinucleotide	8	4	AT	panTro2.chr1_random	7293459	7293467	dinucleotide	8	4	AT
13077	hg18.chr1	165179	165187	dinucleotide	8	4	GC	panTro2.chr1_random	7295617	7295625	dinucleotide	8	4	GC
13177	hg18.chr1	165310	165322	mononucleotide	12	12	A	panTro2.chr1_random	7295748	7295770	mononucleotide	22	22	A
13283	hg18.chr1	219668	219689	tetranucleotide	21	5	TAAA	panTro2.chr3	77587413	77587435	tetranucleotide	22	5	TAAA
13383	hg18.chr1	219668	219689	tetranucleotide	21	5	TAAA	panTro2.chr3	77587413	77587435	tetranucleotide	22	5	TAAA
13487	hg18.chr1	222298	222309	mononucleotide	11	11	T	panTro2.chrUn	1781936	1781946	mononucleotide	10	10	T
13587	hg18.chr1	222298	222309	mononucleotide	11	11	T	panTro2.chrUn	1781936	1781946	mononucleotide	10	10	T
13689	hg18.chr1	224906	224915	mononucleotide	9	9	T	panTro2.chrUn	1780175	1780184	mononucleotide	9	9	T
13789	hg18.chr1	224906	224915	mononucleotide	9	9	T	panTro2.chrUn	1780175	1780184	mononucleotide	9	9	T
13893	hg18.chr1	227371	227380	dinucleotide	9	4	GA	panTro2.chr1_random	7325572	7325581	dinucleotide	9	4	GA
13993	hg18.chr1	227392	227408	mononucleotide	16	16	A	panTro2.chr1_random	7325593	7325616	mononucleotide	23	23	A
14093	hg18.chr1	227371	227380	dinucleotide	9	4	GA	panTro2.chr1_random	7325572	7325581	dinucleotide	9	4	GA
14196	hg18.chr1	234056	234064	dinucleotide	8	4	AG	panTro2.chr1_random	8589985	8589993	dinucleotide	8	4	AG
14297	hg18.chr1	235032	235042	dinucleotide	10	5	TG	panTro2.chr1_random	7331012	7331022	dinucleotide	10	5	TG
14397	hg18.chr1	237516	237529	mononucleotide	13	13	A	panTro2.chr1_random	7333512	7333527	mononucleotide	15	15	A
14499	hg18.chr1	240155	240164	dinucleotide	9	4	CT	panTro2.chr1_random	7334380	7334389	dinucleotide	9	4	CT
14599	hg18.chr1	243706	243714	dinucleotide	8	4	AG	panTro2.chr1_random	7337953	7337961	dinucleotide	8	4	AG
14699	hg18.chr1	244724	244746	mononucleotide	22	22	A	panTro2.chr1_random	7338970	7338987	mononucleotide	17	17	A
14799	hg18.chr1	240155	240164	dinucleotide	9	4	CT	panTro2.chr1_random	7334380	7334389	dinucleotide	9	4	CT
14899	hg18.chr1	243706	243714	dinucleotide	8	4	AG	panTro2.chr1_random	7337953	7337961	dinucleotide	8	4	AG
14999	hg18.chr1	244724	244746	mononucleotide	22	22	A	panTro2.chr1_random	7338970	7338987	mononucleotide	17	17	A
150100	hg18.chr1	248168	248176	dinucleotide	8	4	CA	panTro2.chr1_random	7109861	7109869	dinucleotide	8	4	CA
151100	hg18.chr1	248168	248176	dinucleotide	8	4	CA	panTro2.chr1_random	7109861	7109869	dinucleotide	8	4	CA