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/test-data/gd.extract_primers.txt

https://bitbucket.org/cistrome/cistrome-harvard/
Plain Text | 119 lines | 70 code | 49 blank | 0 comment | 0 complexity | 9110c0416c562c38d7c4858516cc1396 MD5 | raw file
  1> chr18_57379354_57380496 315 C T 0.014036
  2 BanI
  3  1 CAGACTAGGCTTGGGGGTCTTGTCTCTGAACCAGAAGCCGTAAGCTGGGGTGGTGGAACT
  4       >>>>>>>>>>>>>>>>>>>>                                     
  5
  6 61 CCATCCTCTGGAGGGGTAGAAGACAGAGCAGGGCACnACCACGCACAGGCCTTCTTGCAC
  7                                                                
  8
  9121 CATCACAAACTCCTGCATCTGCAGC
 10      <<<<<<<<<<<<<<<<<<<<   
 11
 12> chr18_48070585_48071386 514 C T 0.163186
 13 
 14  1 ATTTCTCTTCTCAGGCCGGTTTAGTTGCACATGCAGAACATGTTTCTGGGCAGCTGTCAC
 15       >>>>>>>>>>>>>>>>>>>>                                     
 16
 17 61 CCGAAGGGACTCATAGCTGTGGCCTGGGGCTTCCTCTGGGGATGCTTnGGAGGCTTCCTC
 18                                                                
 19
 20121 TTGTGCAGAGGCACTCATTGGGCGAAGGCTGAGACCCAGGTTGGTGGAGGCTGTCAGTCC
 21                                                           <<<<<
 22
 23181 TGGGGAGACAGAGGTAGG
 24    <<<<<<<<<<<<<<<   
 25
 26> chr14_80021455_80022064 138 G A 0.194886
 27 Hsp92II
 28  1 CGGGGCTGAAGGGATGGTTATGAAGGTGAGAAACAGGGGCCACCTGTCCCCAAGGTACCT
 29       >>>>>>>>>>>>>>>>>>>>                                     
 30
 31 61 TGCGACnTGCCATCTGCGCTCCACCAGTAAATGGACGTCTTCGATCCTTCTGTTGTTGGC
 32                                                   <<<<<<<<<<<<<
 33
 34121 GTAGTGCAAA
 35    <<<<<<<   
 36
 37> chr19_39866997_39874915 3117 C T 0.946156
 38 BstOI
 39  1 TTTCTCTTGAGTGGGAGTGACGGAAGGGCTGCTGTCCCCAGCCATGGGCACCCCnGGCAG
 40       >>>>>>>>>>>>>>>>>>>>                                     
 41
 42 61 CGGGGGCAGGTCTGTGAGGGTGGGCTGCGTCTCCACCCTCAGCTGGTGCTCCAGCAGGGC
 43                                                                
 44
 45121 TGTCTGCTGCCTGAGCTCCCGGTGCTTGCTCATTTCCTGCTCCAGCTCCTT
 46                                <<<<<<<<<<<<<<<<<<<<   
 47
 48> chr15_64470252_64471048 89 G A 1.325099
 49 
 50  1 GTGTGTGTGTGTGTGCCTGTGTCTGTACATGCACACCACGTGGCCTCACCCAGTGCCCTC
 51       >>>>>>>>>>>>>>>>>>>>                                     
 52
 53 61 AGCTCCATGGTGATGTCCACnTAGCCGTGCTCCGCGCTGTAGTACATGGCCTCCTGGAGG
 54                                                                
 55
 56121 GCCTTGGTGCGCGTCCGGCTCAGGCGCATGGGCCCCTCGCTGCCGCTGCCCTGGCTGGAT
 57                                                          <<<<<<
 58
 59181 GCATCGCTCTCTTCCAC
 60    <<<<<<<<<<<<<<   
 61
 62> chr18_50154905_50155664 304 A G 0.578070
 63 
 64  1 TGGTTTCTCTCTCCCCAGTACGCCCAGCAGTGGAACCAGTACTATCAGAACCAGGGCCAG
 65       >>>>>>>>>>>>>>>>>>>>                                     
 66
 67 61 TGGCCGCCGTACTACGGGAACTATGACTnCGGGAGCTACTCCGGGAACACACAGGGGGGC
 68                                                                
 69
 70121 ACAAGCGCACAGTAGCCACGTGCCCTGGAGGCCCCTGCCGGCTTCCTCCACCAGCGCCCG
 71                                                                
 72
 73181 CCTCAGTCCTCCTCATCCATCCCTC
 74      <<<<<<<<<<<<<<<<<<<<   
 75
 76> chr2_75111355_75112576 314 A C 0.613831
 77 
 78  1 TTTGCCCTGAGGCAGACTTTTTAAAGTACTGTGTAATGTATGAAGTCCTTCTGCTCAAGC
 79       >>>>>>>>>>>>>>>>>>>>                                     
 80
 81 61 AAATCATTGGCATGAAAACAGTTGCAAACTTATTGTGAGAGAAGAGTCCAAGAGTTTTAA
 82                                                                
 83
 84121 CAGTCTGTAAGTATATAGCCTGTGAGTTTGATTTCCTTCTTGTTTTTnTTCCAGAAACAT
 85                                                                
 86
 87181 GATCAGGGGCAAGTTCTATTGGATA
 88      <<<<<<<<<<<<<<<<<<<<   
 89
 90> chr8_93901796_93905612 2471 A C 0.322555
 91 MboI,Sau3AI
 92  1 GGGTTCATGGCAGAGTTGAGCACGGCCAGCACGATGAACCACTGGGCCTTGAACAGGATn
 93       >>>>>>>>>>>>>>>>>>>>                                     
 94
 95 61 GCGCACTCCTTCACCTTGCAGGCCACATCCACAAGGAAAAGGATGAAGAGTGGGGACCAG
 96                                          <<<<<<<<<<<<<<<<<<<<  
 97
 98121 C
 99     
100
101> chr10_7434473_7435447 524 T C 1.119264
102 
103  1 CCTGGCAAAAGCAAAAGAGCAAAAATCTAGAAGnGGTAAGCATCTTCACTGTTTAGCACA
104       >>>>>>>>>>>>>>>>>>>>                                     
105
106 61 AATTAAATAGCACTTTGAATATGATGATTTCTGTGGTATTGTGTTATCTTACTTTTGAGA
107                                                                
108
109121 CAAATAATCGCTTTCAAATGAATATTTCTGAATGTTTGTCATCTCTGGCAAGGAAAT
110                                      <<<<<<<<<<<<<<<<<<<<   
111
112> chr19_14240610_14242055 232 C T 0.835026
113 
114  1 TTTCTGTCATTGTTTGTGACGCAGAAGGGnTGCTGATGTGGAAAGCCTCAAGATGGAGAC
115       >>>>>>>>>>>>>>>>>>>>                                     
116
117 61 GGAAATGCTTTATCCCGAGATAACCGTAGAAGTGGGCAGAGTCACT
118                           <<<<<<<<<<<<<<<<<<<<   
119