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/test-data/cuffcompare_in3.gtf

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 100 lines | 100 code | 0 blank | 0 comment | 0 complexity | 78b0c818db7716bd897c64b7b1b98f87 MD5 | raw file
  1chr1	mm9_refFlat	stop_codon	3206103	3206105	0.000000	-	.	gene_id "Xkr4"; transcript_id "Xkr4"; 
  2chr1	mm9_refFlat	CDS	3206106	3207049	0.000000	-	2	gene_id "Xkr4"; transcript_id "Xkr4"; 
  3chr1	mm9_refFlat	exon	3204563	3207049	0.000000	-	.	gene_id "Xkr4"; transcript_id "Xkr4"; 
  4chr1	mm9_refFlat	CDS	3411783	3411982	0.000000	-	1	gene_id "Xkr4"; transcript_id "Xkr4"; 
  5chr1	mm9_refFlat	exon	3411783	3411982	0.000000	-	.	gene_id "Xkr4"; transcript_id "Xkr4"; 
  6chr1	mm9_refFlat	CDS	3660633	3661429	0.000000	-	0	gene_id "Xkr4"; transcript_id "Xkr4"; 
  7chr1	mm9_refFlat	start_codon	3661427	3661429	0.000000	-	.	gene_id "Xkr4"; transcript_id "Xkr4"; 
  8chr1	mm9_refFlat	exon	3660633	3661579	0.000000	-	.	gene_id "Xkr4"; transcript_id "Xkr4"; 
  9chr1	mm9_refFlat	stop_codon	4334681	4334683	0.000000	-	.	gene_id "Rp1"; transcript_id "Rp1"; 
 10chr1	mm9_refFlat	CDS	4334684	4340172	0.000000	-	2	gene_id "Rp1"; transcript_id "Rp1"; 
 11chr1	mm9_refFlat	exon	4334224	4340172	0.000000	-	.	gene_id "Rp1"; transcript_id "Rp1"; 
 12chr1	mm9_refFlat	CDS	4341991	4342162	0.000000	-	0	gene_id "Rp1"; transcript_id "Rp1"; 
 13chr1	mm9_refFlat	exon	4341991	4342162	0.000000	-	.	gene_id "Rp1"; transcript_id "Rp1"; 
 14chr1	mm9_refFlat	CDS	4342283	4342906	0.000000	-	0	gene_id "Rp1"; transcript_id "Rp1"; 
 15chr1	mm9_refFlat	start_codon	4342904	4342906	0.000000	-	.	gene_id "Rp1"; transcript_id "Rp1"; 
 16chr1	mm9_refFlat	exon	4342283	4342918	0.000000	-	.	gene_id "Rp1"; transcript_id "Rp1"; 
 17chr1	mm9_refFlat	exon	4350281	4350473	0.000000	-	.	gene_id "Rp1"; transcript_id "Rp1"; 
 18chr1	mm9_refFlat	stop_codon	4481797	4481799	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 19chr1	mm9_refFlat	CDS	4481800	4482749	0.000000	-	2	gene_id "Sox17"; transcript_id "Sox17"; 
 20chr1	mm9_refFlat	exon	4481009	4482749	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 21chr1	mm9_refFlat	CDS	4483181	4483487	0.000000	-	0	gene_id "Sox17"; transcript_id "Sox17"; 
 22chr1	mm9_refFlat	start_codon	4483485	4483487	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 23chr1	mm9_refFlat	exon	4483181	4483547	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 24chr1	mm9_refFlat	exon	4483853	4483944	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 25chr1	mm9_refFlat	exon	4485217	4486023	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 26chr1	mm9_refFlat	exon	4486372	4486494	0.000000	-	.	gene_id "Sox17"; transcript_id "Sox17"; 
 27chr1	mm9_refFlat	stop_codon	4766545	4766547	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 28chr1	mm9_refFlat	CDS	4766548	4766882	0.000000	-	2	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 29chr1	mm9_refFlat	exon	4763279	4766882	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 30chr1	mm9_refFlat	CDS	4767606	4767729	0.000000	-	0	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 31chr1	mm9_refFlat	exon	4767606	4767729	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 32chr1	mm9_refFlat	CDS	4772649	4772814	0.000000	-	1	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 33chr1	mm9_refFlat	exon	4772649	4772814	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 34chr1	mm9_refFlat	CDS	4774032	4774186	0.000000	-	0	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 35chr1	mm9_refFlat	exon	4774032	4774186	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 36chr1	mm9_refFlat	CDS	4775654	4775758	0.000000	-	0	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 37chr1	mm9_refFlat	start_codon	4775756	4775758	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 38chr1	mm9_refFlat	exon	4775654	4775807	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15"; 
 39chr1	mm9_refFlat	stop_codon	4764533	4764535	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 40chr1	mm9_refFlat	CDS	4764536	4764597	0.000000	-	2	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 41chr1	mm9_refFlat	exon	4763279	4764597	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 42chr1	mm9_refFlat	CDS	4767606	4767729	0.000000	-	0	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 43chr1	mm9_refFlat	exon	4767606	4767729	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 44chr1	mm9_refFlat	CDS	4772649	4772814	0.000000	-	1	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 45chr1	mm9_refFlat	exon	4772649	4772814	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 46chr1	mm9_refFlat	CDS	4774032	4774186	0.000000	-	0	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 47chr1	mm9_refFlat	exon	4774032	4774186	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 48chr1	mm9_refFlat	CDS	4775654	4775758	0.000000	-	0	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 49chr1	mm9_refFlat	start_codon	4775756	4775758	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 50chr1	mm9_refFlat	exon	4775654	4775807	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; 
 51chr1	mm9_refFlat	exon	4763279	4764597	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; 
 52chr1	mm9_refFlat	exon	4767606	4767729	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; 
 53chr1	mm9_refFlat	exon	4772649	4772814	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; 
 54chr1	mm9_refFlat	exon	4775654	4775807	0.000000	-	.	gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; 
 55chr1	mm9_refFlat	start_codon	4797995	4797997	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 56chr1	mm9_refFlat	CDS	4797995	4798063	0.000000	+	0	gene_id "Lypla1"; transcript_id "Lypla1"; 
 57chr1	mm9_refFlat	exon	4797974	4798063	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 58chr1	mm9_refFlat	CDS	4798536	4798567	0.000000	+	0	gene_id "Lypla1"; transcript_id "Lypla1"; 
 59chr1	mm9_refFlat	exon	4798536	4798567	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 60chr1	mm9_refFlat	CDS	4818665	4818730	0.000000	+	1	gene_id "Lypla1"; transcript_id "Lypla1"; 
 61chr1	mm9_refFlat	exon	4818665	4818730	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 62chr1	mm9_refFlat	CDS	4820349	4820396	0.000000	+	1	gene_id "Lypla1"; transcript_id "Lypla1"; 
 63chr1	mm9_refFlat	exon	4820349	4820396	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 64chr1	mm9_refFlat	CDS	4822392	4822462	0.000000	+	1	gene_id "Lypla1"; transcript_id "Lypla1"; 
 65chr1	mm9_refFlat	exon	4822392	4822462	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 66chr1	mm9_refFlat	CDS	4827082	4827155	0.000000	+	2	gene_id "Lypla1"; transcript_id "Lypla1"; 
 67chr1	mm9_refFlat	exon	4827082	4827155	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 68chr1	mm9_refFlat	CDS	4829468	4829569	0.000000	+	0	gene_id "Lypla1"; transcript_id "Lypla1"; 
 69chr1	mm9_refFlat	exon	4829468	4829569	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 70chr1	mm9_refFlat	CDS	4831037	4831213	0.000000	+	0	gene_id "Lypla1"; transcript_id "Lypla1"; 
 71chr1	mm9_refFlat	exon	4831037	4831213	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 72chr1	mm9_refFlat	CDS	4835044	4835094	0.000000	+	0	gene_id "Lypla1"; transcript_id "Lypla1"; 
 73chr1	mm9_refFlat	stop_codon	4835095	4835097	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 74chr1	mm9_refFlat	exon	4835044	4836816	0.000000	+	.	gene_id "Lypla1"; transcript_id "Lypla1"; 
 75chr1	mm9_refFlat	start_codon	4847995	4847997	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 76chr1	mm9_refFlat	CDS	4847995	4848057	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1"; 
 77chr1	mm9_refFlat	exon	4847775	4848057	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 78chr1	mm9_refFlat	CDS	4857551	4857613	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1"; 
 79chr1	mm9_refFlat	exon	4857551	4857613	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 80chr1	mm9_refFlat	CDS	4868108	4868213	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1"; 
 81chr1	mm9_refFlat	exon	4868108	4868213	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 82chr1	mm9_refFlat	CDS	4876825	4876912	0.000000	+	2	gene_id "Tcea1"; transcript_id "Tcea1"; 
 83chr1	mm9_refFlat	exon	4876825	4876912	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 84chr1	mm9_refFlat	CDS	4879538	4879683	0.000000	+	1	gene_id "Tcea1"; transcript_id "Tcea1"; 
 85chr1	mm9_refFlat	exon	4879538	4879683	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 86chr1	mm9_refFlat	CDS	4880821	4880877	0.000000	+	2	gene_id "Tcea1"; transcript_id "Tcea1"; 
 87chr1	mm9_refFlat	exon	4880821	4880877	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 88chr1	mm9_refFlat	CDS	4881996	4882150	0.000000	+	2	gene_id "Tcea1"; transcript_id "Tcea1"; 
 89chr1	mm9_refFlat	exon	4881996	4882150	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 90chr1	mm9_refFlat	CDS	4883498	4883644	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1"; 
 91chr1	mm9_refFlat	exon	4883498	4883644	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 92chr1	mm9_refFlat	CDS	4885015	4885086	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1"; 
 93chr1	mm9_refFlat	exon	4885015	4885086	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 94chr1	mm9_refFlat	CDS	4886437	4886442	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1"; 
 95chr1	mm9_refFlat	stop_codon	4886443	4886445	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 96chr1	mm9_refFlat	exon	4886437	4887987	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1"; 
 97chr1	mm9_refFlat	start_codon	4847995	4847997	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1_dup1"; 
 98chr1	mm9_refFlat	CDS	4847995	4848057	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1_dup1"; 
 99chr1	mm9_refFlat	exon	4847775	4848057	0.000000	+	.	gene_id "Tcea1"; transcript_id "Tcea1_dup1"; 
100chr1	mm9_refFlat	CDS	4857551	4857613	0.000000	+	0	gene_id "Tcea1"; transcript_id "Tcea1_dup1";