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/test-data/chr22_5sp.maf

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 1814 lines | 1650 code | 164 blank | 0 comment | 0 complexity | 2fba0aa875846904534d084a55e23f2d MD5 | raw file

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  1##maf version=1
  2a score=72335.0
  3s ponAbe2.chr14_random   4420348 101 +   7454900 ggTGAGatgctcactaccttagtgacggcttcaatcgtaccccaaaactcagtatcacacaat------------aaacctgcacatttttatttaatctaaaataaaagttg 
  4s hg18.chr22            14689667 101 +  49691432 ggTGAGatgctcattaccttagtgatggcttcaatcataccccaaaactcagtatcacacgat------------aaacctgcacatttttattcagtctaaaataaaagttg 
  5i hg18.chr22                                     C 0 C 0                                                                                                           
  6s panTro2.chr14         18511284 101 + 107349158 AGTGAGatgctcactaccttagtgatggcttcaatcataccccaaaactcagtatcacacaat------------aaacctgcacatttttattcaatctaaaataaaagttg 
  7i panTro2.chr14                                  C 0 C 0                                                                                                           
  8s rheMac2.chr13        136584868 100 + 138028943 -GTGAGatgctcactaacttagtgatggctttaatcataccccaaaactcagtatcacacaat------------aaacttgcacatttttgttcaatctaaaataaaagttg 
  9i rheMac2.chr13                                  C 0 C 0                                                                                                           
 10s calJac1.Contig8413       25710 112 +     95389 ggtactattcttgcta-cttggcgatggcttcaatcctatcccaaaattcagcatcacacaatataccctgtaacaaacctgcacatctaccccgaatctaaaataaaagttg 
 11i calJac1.Contig8413                             N 0 I 1443                                                                                                        
 12
 13a score=23402.0
 14s ponAbe2.chr14_random   4421542 33 +   7454900 AACACTGACCTAAGTGGATAAACACATGGCAAC 
 15s hg18.chr22            14690862 33 +  49691432 AACGTTGACCTAAGTGGATAAACGCATGGCAAC 
 16i hg18.chr22                                    C 0 C 0                           
 17s panTro2.chr14         18512475 33 + 107349158 AACGTTGACCTAAGTGGATAAACGCATGGCAAC 
 18i panTro2.chr14                                 C 0 C 0                           
 19s rheMac2.chr13        136586050 33 + 138028943 AACATTGACCGAAGTGGATAAATGCATGGCAAT 
 20i rheMac2.chr13                                 C 0 C 0                           
 21s calJac1.Contig8413       27265 33 +     95389 AGCATTGACCTAAGAGAGTAAATGGATGGCAAG 
 22i calJac1.Contig8413                            I 1443 N 0                        
 23
 24a score=37887.0
 25s ponAbe2.chr22      13585900 69 +  46535552 ggtcttccggatttctaaaccattttcAAAGAGTAAGTGATTCACATTAAAAAGGCATATTTcagctgc 
 26s rheMac2.chr9       37387610 69 + 133323859 ggtctcctggatttctaaactattttcAAAGAGTAAGCGATTCACATTAAGAAGACATATTTcagttgc 
 27i rheMac2.chr9                               C 0 C 0                                                               
 28s panTro2.chr10      27717141 69 + 135001995 GGTCTTCTGGATTTCTAAACCATCTTCAAAGAGTAAGTGATTCACATTAAAAAGACATATTTcggctgc 
 29i panTro2.chr10                              I 856 C 0                                                             
 30s hg18.chr22         14865624 69 +  49691432 ggtcttctgggtttctaaaccattttcAAAGAGTAAGTGATTCACATTAAAAAGACATATTTcagctgc 
 31i hg18.chr22                                 C 0 C 0                                                               
 32s calJac1.Contig7684    73267 52 -    101326 ----------------aaaccatcttcAAA-AGTAAGTAAGTAACATTAAAAAGACATATTTTAgctgc 
 33i calJac1.Contig7684                         N 0 C 0                                                               
 34
 35a score=28433.0
 36s ponAbe2.chr22      13585969 53 +  46535552 tctgcctatagagtagccattccattcttttattcctttaccttcttaataaa 
 37s rheMac2.chr9       37387679 48 + 133323859 tctgcctatggagtagcca-----ttcttttattcctttactttgttaataaa 
 38i rheMac2.chr9                               C 0 C 0                                               
 39s panTro2.chr10      27717210 48 + 135001995 tctgcctatggagtagcca-----ttcttttattcctttactttcttaataaa 
 40i panTro2.chr10                              C 0 I 218                                             
 41s hg18.chr22         14865693 53 +  49691432 tctgcctatggagtagccattccgttcttttattcctttaccttcttaataaa 
 42i hg18.chr22                                 C 0 C 0                                               
 43s calJac1.Contig7684    73319 42 -    101326 tctgcctatggagtagcca-----ttcttttattcctttactttctt------ 
 44i calJac1.Contig7684                         C 0 N 0                                               
 45
 46a score=31907.0
 47s ponAbe2.chr22    13601555 113 +  46535552 AAATGTCCTGTTTAGTTTCTGGATACAAGtttttgagttttagttttcctaatctttaaaaagagttaatattagttaggcaccctggctcatgcctgtaatcccagtacttt 
 48s hg18.chr22       14879601 113 +  49691432 AAATGTCCTGTTTAGTTTCTGGATACAAGTTTTTGAGCTTTAGTTTTCCTAATCTTTAAAAAGAGTTAATATTagtcggacagcgtggctcacaattgtaatcccagcacttt 
 49i hg18.chr22                                C 0 C 0                                                                                                           
 50s panTro2.chr10    28793519  57 + 135001995 AAAGGTCCAGTTTCATTTCTGGATACAAGtttttgagctttaattttcttaatcttt-------------------------------------------------------- 
 51i panTro2.chr10                             C 0 C 0                                                                                                           
 52s rheMac2.chr9     37402661 113 + 133323859 AAATGTCCTGTTTAGTTTCTGGATACATGtttttgagctttagttttcctaatctttagaaagaattaatattagttgggcacggtggctcacacctgtaatcccagcacttt 
 53i rheMac2.chr9                              C 0 C 0                                                                                                           
 54s calJac1.Contig31   207366  51 +   1545170 AGACGTACTAT--------------------------------------------------------------ggccgggagcggtggctcaagcctgtaatcccagcacttt 
 55i calJac1.Contig31                          N 0 C 0                                                                                                           
 56
 57a score=1818.0
 58s ponAbe2.chr22      13762172 93 + 46535552 AGTTCCTtcctc---aaagtgtggtctgggtcaggccacctgcattagaatccacaggaagggggctgggagaggggt--gctagtta--tttttacagc 
 59s rheMac2.chr10      61844509 88 + 94855758 aatc-----ctc---aaagtgtggtctgggtcaggccaactgcattagaatccataggaagggggctgggagaggggt--gctagtta--tttttacagc 
 60i rheMac2.chr10                             I 309 C 0                                                                                            
 61s panTro2.chr22      16069569 79 + 50165558 aaTCACCTGCTCTGGGAAGTGCAGTTTCTTCCAGCCTACCT---------------------AGGCCAGGAGCAAAGTCAGCTCATCAATTTTTGCCAGC 
 62i panTro2.chr22                             C 0 I 185                                                                                            
 63s hg18.chr22         16061104 79 + 49691432 aaTCACCTGCTCTGGGAAGTGCAGTTTCTTCCAGCCTACCT---------------------AGGCCAGGAGCAAAGTCAGCTCATCAATTTTTGCCAGC 
 64i hg18.chr22                                C 0 I 185                                                                                            
 65s calJac1.Contig6986   119247 53 -   144597 -------tccta---accttgtgatct------gcctgcct----tggcctcccaaa-----gtgctgagattacagg---------------------- 
 66i calJac1.Contig6986                        N 0 C 0                                                                                              
 67
 68a score=24071.0
 69s ponAbe2.chr22      13762515 81 + 46535552 TGCATTCAGGCTACTGAACAGAACTACATTACAGGGAACAAAGGAAGGAGTGAAGTGGAAAACCAT---GGTCCCAGAAAGGAT 
 70s hg18.chr22         16061368 70 + 49691432 TGCACTCAG----------AGAGTTAAA--ATAGAAAACAAGCAACAGATCCAAGTGGAGA--CATGCAGATCACACAAGAGAT 
 71i hg18.chr22                                I 185 N 0                                                                            
 72s panTro2.chr22      16069833 70 + 50165558 TGCACTCAG----------AGAGTTAAA--ATAGAAAACAAGCAACAGATCCAAGTGGAGA--CATGCAGATCACACAAGAGAT 
 73i panTro2.chr22                             I 185 N 0                                                                            
 74s rheMac2.chr10      61845162 79 + 94855758 TGCATTCAGGCTACCGAAAAGAAACATT--ATAGGGAACAAAGGAAGGAGGGAACTGGAAAGCCAT---GGTCCCAGAAAGCAC 
 75i rheMac2.chr10                             C 0 C 0                                                                              
 76s calJac1.Contig6986   119509 79 -   144597 TGCATTTGGGCTACTGAAAAGAAACGTT--ACAGGGAACGAAGGAATGAGGGAAGTGGAAAGCCCT---GGTCCCAGACAGAAT 
 77i calJac1.Contig6986                        C 0 C 0                                                                              
 78
 79a score=273897.0
 80s ponAbe2.chr22      13767485 392 + 46535552 agtaaCCTCAGGGGAGCACTCTGTAGACATTTCTGTG-ATCAAACTAATTGTCACTTAT--AATATTACTATACAAggccaggcacaatggctcggctcatgcccgtagttctagcactttgggaggccaaggcgagaggatggcttgagccccagagttcaagaccagcctgggcaacacggcaaaaccccatctc-acaaaaaaatacaaaaaattagctgggcatgatggtgcacacctctagggtgctgacacaggaggattgcttcagctgacacaggaggctgacacaggaggattgcttcagcctgggaggttgagtctgaagtgagccgagattttgccactgcactccagcctagatgatagaatgagaccctgtcttaaaTAG------TAG 
 81s panTro2.chr22      16075328 390 + 50165558 agtaacctcaggggagcactctgtagacatttctgtg-atcaaattaattgtcacttat--aatattactatacaatgccaggcacaATGGCTCggctcatgcctgtagtcctagcactttgggaggccaaggcgagaggacggcttgagccgcagagttcaagaccagcctgggcaacatggcaaaactccatctc-ac-aaaaaatac-aaaaattagctgggcatgatggtgcacacctctagtgtgctgacacaggaggattgcttcagctgacacaggaggctgacacaggaggattgcttcagcctgggaggttgagtctgaagtgagccgagattgtgccactgcactccagcctagatgatagaatgagaccctgtcttaaaTAG------TAA 
 82i panTro2.chr22                              C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                            
 83s rheMac2.chr10      61852204 358 + 94855758 aataacctcaggggagcactctctagacatctgtgtg-accaaactaattgtcacttat--aATATTACTATACAAggccaggcacaa-----cggctcgtgcctgtagtcctagcactttgggaggccaaggcgacaggatggcttgagccccagagttcaagaccagcctgggcaacatggcaacaccccatctctac-aaaaaatac-aaaaattagctgggcgtgatggtgcgtacctctagcgtgctgac----------------------------------acacaggaggattgcttcagcctgggaggttgagtctgcagtgagccgagattgtgccactgcactccagcctagatggtagaatgagaccctgtcttaaatagtaataataa 
 84i rheMac2.chr10                              C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                            
 85s hg18.chr22         16066508 390 + 49691432 agtaacctcaggggggcactctgtagacatttctgtg-accaaattaattgtcacttat--aatattactatacaatgccaggcacaATGGCTCggctcatgcctgtagtcctagcactttgggaggccaaggtgagaggacggcttgagccgcagagttcaagaccagcctgggcaacacggcaaaaccccatctc-ac-aaaaaatac-aaaaattagctgggcatgatggtgcacacctctagtgtgctgacacaggaggattgcttcagctgacacaggaggctgacacaggaggattgcttcagcctgggaggttgagtctgaagtgagccgagattgtgccactgcactccagcctagatgatagaatgagaccctgtcttaaaTAG------TAA 
 86i hg18.chr22                                 C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                            
 87s calJac1.Contig6986   125582 350 -   144597 --------------aGCACTCTGTAGACATTTCTGTGAATCAAACTAATGGTCACTTATAAAATATTACTATACAAggccaggtacga-----tggctcatctttgtagtcctagcactttgggaggccaaggcgagaggacggcttgagcccaggagttcaggaccaggctgagcaacatggcaaaaccccatctctac-aaaaaatac-gaaaattagctgggcgtcatgctgcacacctctag----------------------tcccagttactctgagggctgacac--gaagattgcttcatcctgggaggttgaggctgcagtgagccgacattgtgccactgcgctccagcccagatgatagaattagaccctgtcttaaaTGG------TA- 
 88i calJac1.Contig6986                         I 5892 I 1                                                                                                                                                                                                                                                                                                                                                                                                         
 89
 90a score=44055.0
 91s ponAbe2.chr22      13767877 56 + 46535552 TAATAATAATGATACTATACAAGTCTGTTAGGAAGTTGCTGCATCAGGTTTTCAAG 
 92s panTro2.chr22      16075718 53 + 50165558 TAATAATAATGATACTATACAAGTCTGTTAGGAAGTTGCTGCATCAGATTTTC--- 
 93i panTro2.chr22                             C 0 C 0                                                  
 94s rheMac2.chr10      61852562 56 + 94855758 taataataataataCTATACAAGTCTGTTAGGAAGTTGCTCCAACAGGTTTTCAAG 
 95i rheMac2.chr10                             C 0 C 0                                                  
 96s hg18.chr22         16066898 56 + 49691432 TAATAATAATGATACTATACAAGTCTGTTAGGAAGTTGCTGCATCAGATTTTCAAG 
 97i hg18.chr22                                C 0 C 0                                                  
 98s calJac1.Contig6986   125933 56 -   144597 TAATAGTAATGATACTATACAAGTCTGTTAGGAAATTGCTCCATCACGTTTTCAAG 
 99i calJac1.Contig6986                        I 1 I 315                                                
100
101a score=223423.0
102s ponAbe2.chr22      13767933 295 + 46535552 AAGATTTATCTTCCAGCTAGGTTGTCATCACTTCAGAGCTAGGAACTTGTATTCTCTCTGGTCTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAATAGTGTTGCTggctaggcacggtcactcatgcctgtaatcccagcact--------------------------------------------------------ttgggaggctgagatgggcagatcacctaaggtcaggagttcaagaccagcctggccaacatggtgaaa----ccctgtctctactaaaaatacaaaaattagccaggcgtggtggcacatgtctgtaatcccagctactcagaaagctga 
103s panTro2.chr22      16075771 295 + 50165558 AAGATTTATCTTCCAGCTAGATTGTCATCACTTCAGAGCTAGGAACTTTTATTCTCTCTGGTCTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAATAGTGTTGCTGACTAggcacggtcactcatgcctgtaatctcagcact--------------------------------------------------------ttgggaggccgagatgggcagatctcctgaggtcaggagttcaagaccagcctggccaacatggtgaaa----acctgtctctactaaaaatacaaaaattagccaggcatggtggcacatgtctgtaatcccagctactcagaaagctga 
104i panTro2.chr22                              C 0 C 0                                                                                                                                                                                                                                                                                                                                                             
105s rheMac2.chr10      61852618 286 + 94855758 AAGATTTATCTTCCAGCTAGATTGTCATCACTTCAGAGCTAGGAACTTTTATTCTCTCTGGTTTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAACAGTGTTGCTggcgaggcgcggtcactcacacctgtaatcccagcact--------------------------------------------------------ttcggaggccgagatgcacagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa----ccctgtttctactaaaaatacaa---------aggcgtggtggcacatgtctgtaaccccagctactcagaaggctga 
106i rheMac2.chr10                              C 0 C 0                                                                                                                                                                                                                                                                                                                                                             
107s hg18.chr22         16066954 295 + 49691432 AAGATTTATCTTCCAGCTAGATTGTCATCACTTCAGAGCTAGGAACTTTTATTCTCTCTGGTTTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAATAGTGTTGCTGACTAggcatggtcactcatgcctgtaatctcagcact--------------------------------------------------------ttgggaggccaagatgggcagatctcctgaggtcaggagttcaagaccagcctggccaacatggtgaaa----ccctgtctctactaaaaatacaaaaattagccaggcatggtggcacatgtctgtaatcccagctactcagaaagctga 
108i hg18.chr22                                 C 0 C 0                                                                                                                                                                                                                                                                                                                                                             
109s calJac1.Contig6986   126304 352 -   144597 aagaTTCATCTTCCAGCAAGATCGTCACCACTTCAGATCTAGGAACTTTTATTCGCTCTGGTCTTACTGAGCATCAGACAAATCTCATTTGCT---GCCATAGAGTTGCTggccaggcgcagcgtctcacgcccgtaatcccagcactttgggaggccgaggtgggggccgggctcagcggctcacgcccgtaatcccagcacgttgggaggccgaggtgggtggattaactgaagtcaggagttcaggaccagcctgatcaagagactgaaaccctccctgtttctactgaaaatacaaagattagccatgcatggtggtacatgcctgtaatcccagctactcagatggctga 
110i calJac1.Contig6986                         I 315 I 1658                                                                                                                                                                                                                                                                                                                                                        
111
112a score=39158.0
113s ponAbe2.chr22      13770129 48 + 46535552 aaaaaaaCagccgggcacggtggctcactcctgtaaccccagcacttt 
114s hg18.chr22         16069025 48 + 49691432 aaaaaaaCagctgggcacagtggctcactcctgtaaccccagcacttt 
115i hg18.chr22                                C 0 I 351                                        
116s panTro2.chr22      16077844 48 + 50165558 aaaaaaaCagctgggcacagtggctcactcctgtaaccccagcacttt 
117i panTro2.chr22                             C 0 I 345                                        
118s rheMac2.chr10      61854937 48 + 94855758 AAGAAAACagccaggcatggtggctcgctcctgtaaccccagcacttt 
119i rheMac2.chr10                             C 0 I 351                                        
120s calJac1.Contig6986   128314 48 -   144597 TAAAAATCggctgggcacagtggctcacccctgtaatcccagcacttt 
121i calJac1.Contig6986                        I 1658 I 944                                     
122
123a score=210038.0
124s ponAbe2.chr22      13770841 304 + 46535552 gctcacacctgtaatctcagcactttgcgaggccgaggagtgaagattacatgagctcaggagttggagatcagcctgccccacattgtgacaccccgtctataccaaacgtacaaaaa----------------ttatccacgcgtggtggtgcatgcctgtaatcccagctactcaggagcctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaagatagcaccagtgcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaatttttttaat-aaaagaaaaaaaTTAAC 
125s hg18.chr22         16069424 303 + 49691432 gctcacacctgtaatcccagcactttgggaggccgaggagtgtggattgcctgagctcaggtgttcgagatcagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaa----------------ttatccaggtgtggtggttcatgcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcacaccagtgcacttcagcctgggcaacagagtgagactctgtctcaaaaaaaattttttttaat--aaaaaaaaaaaTTAAC 
126i hg18.chr22                                 I 351 C 0                                                                                                                                                                                                                                                                                                                         
127s panTro2.chr22      16078237 301 + 50165558 gctcacacctgtaatcccagcactttgagaggccgaggagtgtggattgcctgagctcaggtgttcgagatcagcctggccaacatggtgaaaccccgtctctactgaaagtacaaaaa----------------ttatccaggtgtggtggttcatgcacgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcacaccagtgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaaatttttttaat----aaaaaaaaaTTAAC 
128i panTro2.chr22                              I 345 C 0                                                                                                                                                                                                                                                                                                                         
129s rheMac2.chr10      61855336 303 + 94855758 gctcacacctgtaatcccagcactttgggaggccgaggtgggtggattgcctgagctcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaagtacaaaaa----------------tcacctaggtgtgatggtgcatgcctgtaatcccagctactcaggagactgaggcaggagaatcacttgaacccaagaggcagaggttgcagtgagccgagatagcaccagtgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaattttttttaat--ttaaaaaaaaaaaaac 
130i rheMac2.chr10                              I 351 C 0                                                                                                                                                                                                                                                                                                                         
131s calJac1.Contig6986   129306 311 -   144597 gctcaagcctgtaatcccagcactttgggaggccgagatgggtggatcacacag--tcaagagatcaagaccatcctggccaacatggagaaaccccgtctttactaaaaatacaaaaaaaaaaaaaaaaaaaatttagccaggcatggtggcacgtgcctgtggtcccagctactcgggaggctgaggtggaagaatcacttgaacccaggaggtggacgttgcagtgagccgagactgtgccaccgcactccagcct-ggtgacagagcaagaatccatctcaaaaaaaaa-------aaccaaaaaacaaaaaTTAGC 
132i calJac1.Contig6986                         I 944 C 0                                                                                                                                                                                                                                                                                                                         
133
134a score=195144.0
135s ponAbe2.chr22      13771276 279 + 46535552 caggtacaccaccacccctggctaTTTATATGTGCAGGATGCTAATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCACATTATATCCTATGTGGTAGCTTAACCCCTG--------------------------GGAAAACTATAAAGGGAA-AGCAAAGTCTCAGGGCTGGATGCTTTT----------------------------------CCAATCCTGACTGTCTGCGAGTCCCCCAGGAAGCAGGGGTTTTGGTTTCCAACACCCTTTTCCTAGTCTACCCATAAGGACAGAGGAGGAGAACAGCTGAGGGAGG 
136s calJac1.Contig6986   129617 291 -   144597 CAGGCAT-----------------------------GGATGCTAATTATTTCATCATTCATGGAGGTGTGTTTATACCA-TCCAGGATGCTATATCATATTAT---------GGTAGCTTAGCCCCTGGGAAAGGCGTAGAAGAAAGATTGTAAGGAAAGCTATGAAGGGAATAGCACAGTCTCAAGGCTGGATGCTTTTCCAACTTTTCCAGGGAAGACCAGGAATATTCAGGCCCATCCTGATTGTC-GCAAGTCCCCTA---------GGTCTTGGTTTCTGACACCCTTCTCCTAGTCTACCCGTAAGGACAGCGGAGCAGAGCGGCTGAGTGAGG 
137i calJac1.Contig6986                         C 0 C 0                                                                                                                                                                                                                                                                                                                                              
138s rheMac2.chr10      61855767 314 + 94855758 caggtgcaccaccgctcctggctatttatatGTGCAGGATGCTGATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCGTATTGTATCCTATGCGGTAGCTTAGCCCCTG--------------------------GGAAAACTATGAAGGGAATAGCAAAGTCTCAGGGTTGGATGCTTTTCCAACTTTTCCAGGGAAGACCAGGAATATTCAGGCCAATCATGACTGTCTGCGAGTCCCCCAGGAAGCAGGGGTTCTGGTTTCCAACACCCTTTACCTAGTCTACCTAAAAGGACAGAGGAGCAGAGCAGCCGAGTGAGG 
139i rheMac2.chr10                              C 0 C 0                                                                                                                                                                                                                                                                                                                                              
140s panTro2.chr22      16078669 280 + 50165558 caggtgcaccaccacccctggctatttatatGTGCAGGATGCTAATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCACATTGTATCCTATGTGGTAGCTTAGCCCCTG--------------------------GGAAAACTAAAAAGGGAATAGCAAAGTCTCAGGGCTGGATGCTTTT----------------------------------CCAATCCTGACTGTCTGCGAGTCCCCCAAGAAGCAGGGGTTTTGGTTTTCAACACCCTTTTCCTAGTCTACCCATAAGGACAGAGGAGCAGAACAGCTGAGTGAGG 
141i panTro2.chr22                              C 0 C 0                                                                                                                                                                                                                                                                                                                                              
142s hg18.chr22         16069858 280 + 49691432 caggtgcaccaccacccctggctatttatatGTGCGGGATGCTAATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCACATTGTATCCTATGTGGTAGCTTAGCCCCTG--------------------------GGAAAACTAAAAAGGGAATAGCAAAGTCTCAGGGCTGGATGCTTTT----------------------------------CCAATCCTGACTGTCTGCGAGTCCCCCAGGAAGCAGGGGTTTTGGTTTTCAACACCCTTTTCCTAGTCTACCCATAAGGACAGAGGAGCAGAACAGCTGAGTGAGG 
143i hg18.chr22                                 C 0 C 0                                                                                                                                                                                                                                                                                                                                              
144
145a score=43910.0
146s ponAbe2.chr22      13771555 56 + 46535552 CTTTCTCTGCTCCATCTAGAATAGCAACAGCCACAAGCACAGTAATAGCCCCAAGA 
147s hg18.chr22         16070138 56 + 49691432 CTTTCTCTGCTCCATCTAGAATAGCAACAGCCACAAGCACAGTAATAGCCCCAAGA 
148i hg18.chr22                                C 0 C 0                                                  
149s panTro2.chr22      16078949 56 + 50165558 CTTTCTCTGCTCCACCTAGAATAGCAACAGCCGCAAGCACAGTAATAGCCCCAAGA 
150i panTro2.chr22                             C 0 C 0                                                  
151s rheMac2.chr10      61856081 56 + 94855758 CTTTCTCTGCTCCACCTAGAATAGCAACAGCCGCAAGCACAGTAGTAGCCCCAAGA 
152i rheMac2.chr10                             C 0 C 0                                                  
153s calJac1.Contig6986   129908 55 -   144597 -TCTCTGTGCTCTGTCTAAAATAGAAACAGCTACAAGCACGACAGCAGCTCCGAGA 
154i calJac1.Contig6986                        C 0 I 7490                                               
155
156a score=1046331.0
157s ponAbe2.chr22      13794262 1386 + 46535552 aagaacttgaaaatcactgcctctaagaagCTAACAGTGTTTGGTATTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGTGCACAGCCCCAGTTAGGGGCCTTCTTCCTGTTTTTTGGCTGTTGAGATGCTGATAAGGTGACCTTGGAGCAGAATGGAGAAATGAACGGTGTTATACACAAACCACAGATGCTACACCCGAGCAGAACCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCATGACTGTAAGGGGCAAACTGAAAAGTAAGACTGAGGCCTGCAGCAACTCGTGACTCTTGAAGCTATTTGCTCCCTGTCCAGCTTCCCCATTAGATTGCAACACTCATTAAATATTTGCTAAAAAGTTgctcacagttagtgagcacttactatgtgctggacactggactagagtgcgtggtctacgccatctcatgcggtcctcaggacaactctgtgagggagatgatctgcccatt--------------ttatagatgcagaagtccaggACCCACTAAGTAAAATATTGGAACTGGGGAGGCAGTCTTGGGGCCATGCTGCTCATGGCTCTGTTCCACTGTCTTCCTTGTTGCTTCTCCCTGCTGAACTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCTTTTTT-TGGGAATGCAAATGCTCAAACATATACTCAGTGAGAGAGGAGCTGGTTAGTT--TATCTCTGTCCTCATATTGTGACAGTGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgacttttccattttccctccccacaaaagctattcttcttccaactttccccttcccagtgagtggcacctccatccacccagttgtttctgccagaaacctgatttccactctagaaaatgaggaggagttagcggatatcttccacatctcccaccccaaacctccaccagg-------------cccccatgtttacccttcaacctgcccactccttccatctccgcgattgcaacccaatgcaaggtcccatcatcccgcagctgctcacttcagcagcttctacttttgtcccctttccattaattttccactctgcagatctaaaaacacaaatttcagcatgcccctcatgttccttcctgctgaaaacctttcaaagtctacccactacacagtgagtaaaatgcaagctcttttccttggcctgctgggccAGCCTCATCATGGGCCTGGGgaccatgtctccaccctctcccccagctcccgacctgctggccagccttcctgtagcctctcaagtgaggaggcccttcacttccaaggcactgctgtgctatccgctttacaggcgagctccttccc----------------------------ctccttgacc--------------agtgcag 
158s hg18.chr22         16089475 1362 + 49691432 aagaacttgaaaatcactgcctctaagaagCTAACAATGTTTGGTATTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGTGCACAGCCCCAGTTAGGGGCCTTCTTCCTGCTTTTTGGCTGATAA--------------------GGAGCAGAATGGAGAAATGAACGGTGTTATACACAAACCACAGATGCTACACCCGAGCAGAACCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCATGACTCTAAGGGGCAAACTGAAAAGTAAGACTGAGGCTTGCAGCAACTTGTGACTCTTGAAGCTATTTGCTCCCTGTCCAGCTTCCCCATTCGATTGCAACACTCGTTAAATATTTGCTCAAAAGTTgctcacagttagtgggcacttactatgtgctgggcactggactaaaggtcgtggtctacgccatctcatgcggtcctcaggacaattctgtgaggtaggtgatctgcccatt--------------ttacagatgcagaaGTCCAGGACCCACTAAGTAAAATATTGGAACTGGGGAGGCAGTCTTGGGGCCATGCTGCCCATGGCTCTGTTCCA--GTCTTCCTTGTTGCTTCTCCCTGCTGAATTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCTTTTTT-TGGGAATGCAAATGCTCAAACATATACTCAGTGAGAGAGGAGCTGGTGAGTT--TGTCTCTGTCCTCATATTGTGACAGTGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgacttttccattttccctccccacaaaagctgttcttcttccaactttccccttcccagtgagtggcacctccatccacccagttgtttctgccagaaacctgatttccactctagaaaatgaggaggagttagcggatatcttccacatctcccaccccaaatctccaccagg-------------cccccatgtttacccttcaacctgcccactccttccatctccacagttgcaacccaatgcaaggccccatcatccctcagctgctcacttcagcagcttctacttttgtcccctttccattaattttccactctgcagatctaaaaacacaaatttcagcatgcccctcatgttccttcctgctgaaaacctttcaaagtctacccactacacagtgagcaaaatgcaagctctttttcttggcctgctgggccagccttatc--tggcctggagaccatgtctccaccctctcccccagctcccgacctgctggccagccttcctgtggcctctcaagtgagggggcccttcacttccaaggcgctgctgtgcaatcccctttacgggggagctccttccc----------------------------ctccttgact--------------agtgcag 
159i hg18.chr22                                  C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
160s panTro2.chr22      16100440 1396 + 50165558 aagaacttgaaaatcactgcctctaagaagCTAACAATGTTTGGTATTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGTGCACAGCCCCAGTTAGGGGCCTTCTTCCTGCTTTTTGGCTGTTGAGATGCTGATAAGGTGACCTTGGAGCAGAATGGAGAAATGAACGGTGTTATACACAAACCACAGATGGTACACCCGAGCAGAACCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCATGACTCTAAGGGGCAAACTGAAAAGTAAGACTGAGGCCTGCAGCAACTCGTGACTCTTGAAGCTATTTGCTCCCTGTCCAGCTTCCCCATTCGATTGCAACACTCATTAAATATTTGCTCAAAAGTTgctcacagttagtgagcacttactatgtgctggacactggactaaaggtcgtggtctacgccatctcatgcggtcctcaggacaactctgtgaggtaggtgatctgcccattttatagatgcagaattatagatgcagaAGTCCAGGACCCACTAAGTAAAATATTGGAACTGGGGAGGCAGTCTTGGGGCCATGCTGCCCATGGTTCTGTTCCA--GTCTTCCTTGTGGCTTCTCCCTGCTGAACTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCGTTTTT-TGGGAATGCAAATGCTCAAACATACACTCAGTGAGAGAGGAGCTGGTGAGTT--TGTCTCTGTCCTCATATTGTGACAGGGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgacttttccattttccctccccacaaaagctgttcttcttccaactttccccttcccagtgagtggcacctccatccacccagttgtttctgccagaaacctgatttccactctagcaaatgaggaggagttagcgggtatcttccacatctcccaccccaaatctccaccagg-------------cccccatgtttacccttcaacctgcccactccttccatctccacagttgcaacccaatgcaaggccccattatccctcagctgctcacttcagcagcttctacttttgtcccgtctccattaattttccactctgcagatctaaaaacacaaatttcagcatgcccctcatgttccttcctgctgaaaacctttcaaagtctacccaccacacagtgagtaaaatgcaagctctttttcttggcctgctgggccagccttatc--tggcctggagaccatgtctccaccctctcccccagctcccgacctgctggccagccttcctgtggcctctcaagtgagggggcccttcacttccaaggcactgccgtgcaatcccctttacgggggagctccttccc----------------------------ctccttgacc--------------agtgcag 
161i panTro2.chr22                               C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
162s rheMac2.chr10      61887207 1386 + 94855758 aaagaCTTGAAAATCACTGCCTCTAAAAGGCTAAGAATGTTTGGCGTTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGGGCACAGCCTCAGTTACGGGCCTTCCTCCTGTGTTTTGGCTGTTGAGCTGCTGCTAAGGTGACGTTGGAGCAGAATGGAGAAATGAACGATGCCATACACAAACCACAGATGCTACACCGGAGCAGAGTCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCACGACTCTAAGGGGCAAACTGAAAAGTAAGACTGAGACCCGCAGCAACTCATAACCCTTGAAGCTATTTGCTCCCTGTCCGGCTT-CCCATTAGATTGCAGCGCTCATTAAATATTTGCTCAAAAGTTGCACAcagttagtgagcacttaccacgtgctggacactggactaaagtgcgtggtctacaccatctcatgcggtcctcaggacaactctgtgagggaggtgatctgcccatt--------------ttacagatgcggaaGTCCAGTACCCACTAAGTAAAATATTGGAAGCGGGGAGGCAGTCTTGGGGCCATGCTGTCCATGGCTCTGTTCCACTGTCTTCCTTGTTGCTTCTCCCTGCTGAACTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCTTTTTA-TTTAGATGCAAATGCTCAAACATATACTCAGTGAGAGAGGAGCTGGTGAGTTTATGTCTCTCTCCTCATATGGTGACAGTGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgagttttccactttccctccccacaaaagctgttctgcttccaactttccccttcccagtgagtggcacctccatccacctagttgcttctgccagaaacctgatttccactctagaaaat---gaggagttagctgatatcttccacatctcccaccccaaacctccaccaggccctgcctgtcgtcccccatgtttacccttcaacctgcccactccttccatctccacaactg-aaaccaatgcaaggccccatcatccctcagctgcccatttcagcagcttctacttttgtcccctttccattaattttccactctgtagatctaaaaacacaaatttcagcatgcccttcatgttccttcctgctaaaaacctttcaaagtctacccactacacagtgagtaaaatgcaagttctttttcttggcctgctgggccagcctcatc--tggcctggggaccatgtctccaccctctccccca-ttcccgacccgctggccggccttcctgtgccctcaaaagtgagggggtccttcgcttccaaggcattgccatgcaatcccctttacggggcagctccttccc----------------------------cTCCTTGACC--------------------- 
163i rheMac2.chr10                               I 30626 C 0                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
164s calJac1.Contig5889    56093 1410 +   156393 aagaaagagaaag---------CAAGCAAGCTAAGACTGGTTGGCATGGGGATCAACTCTTGGGAACCTGACTC--TAAACGATGAGTGTGAGTGCACAGCCCCAGCGAGGAGCCTTCTTTCTGTTTTTTGGCTGTTGAGCTGCTGATAAGGTAAACTTGGAGCAGAATAAAGAAATGAACACTGTCACACACAAACCACAGATGCTACACCTGAGCGGAGCCCAGCAGATCATCACTAACCCAGGAGGGGAGAACACTTGACTTCATGACTCTAAGGGGCAGACTGTAAAGTAAGATTGACTACTTCAGCAACTCGTGACTCTTGAAGCCATTTTCTCCCTGTCCATCTTCCCCATTAGAGTGCAACACTCATTAAACATTTGCTCACAAGTTgctttcaatgagtgagcacttactatgcact-gacactggactaaagtgcatggtccacaccgtctcatgtggtcctcaggacaaccctataagggaggtaatctgcccatt--------------ttacagatgtggaaGTCCATTCTCCACTAAG-----TATTGCAACCAGACAGGCAGTCTCAGGGCTGTGCTGCCCATG--TCTGTTTCACTGTCTTCCTTGTCTCTTCCCCCTGCTGAATTCCCAGAAGCTGCCAAAAAAATATTTTTTTTGATTGTCCTTTTTTGTCGGAATGCAAATGTTCAAACATACGTTGGGTGAGAGAGGAGCTGGTGAGTTTATGTCTCTCTCCTCATGTCATGACAGTGAACATGCAAACATTGAGATTTCAAACTCAACTTGG-CCACATTGACTTTTCTACCTTCCCTCCCCACAAAATCTGGTGTTATTCCAAC--TCCACTTCTCAGTGAGTGGCACCTCCATCCACCCAGTGGTTTCTGCCATAAACCTGATTTCCATTCTAGAAAATGAGGAGGAGTTAGCTGATACTTTCTGCATCTCCCACACAA------CAGCGGGCCCTGACTGTGGTGTCCCATGTTTACCCTTCAGCCTGCCCACTCCTTCCATCTCCACAATGGCAACCCAGCACAAGACTCCATCGTCCCCCAGCCACTCACTTCAGTAGTTTCTACTTTTGACCCCTTTTGATTAATCTTTTACTCTGCA-ATCTAAAAGCACAAATCTCAGCATGCCCCTCATGCTCCTTTCTGCTGAAAACCTTTCAAAGTCTACCCACAACACAGCAAGTAAAATGCAAGCTCTTTTTCTGGGCCTGCTAGGCCAGCCTTATC--TGGCCTGGGAACCATGTCTCCATCACCTCCTCCAGCTCCTGACCGGCTGGCCAGCCTTTCTGTGGCC-CTCAAGTGAGGGG--CCTTCActtccaaggctttgacatgcaatcccctttgccagaagcttctttcccctttccttttttttgagacagagtctcactccatcaccaggcaccagactggagtgcag 
165i calJac1.Contig5889                          C 0 I 198                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
166
167a score=81430.0
168s ponAbe2.chr22      13795648 146 + 46535552 ctcccacccatccttcagatcccaacggaaatg--tgtcttcctggggagggcttcagggaacacccctataggaagttagc------------cccagttccagtcttcacaatacccttttatcttcttcctcaacatgtatcacagcttgtgatttt 
169s hg18.chr22         16090837 146 + 49691432 ctcccacccatccttgagatcccgatggaaatg--tgtcttcctggggagggcttcAGGGAACACCCCTATAGGAAGTTAGC------------CCCGGTTCCACTCTTCACAATACCCTTTTATCTTCTTCCACAACATGTATCACAGCTTGTGATTTT 
170i hg18.chr22                                 C 0 C 0                                                                                                                                                          
171s panTro2.chr22      16101836 146 + 50165558 ctcccacccatccttcagatcccgatggaaatg--tgtcttcctggggagggcttcAGGGAACACCCCTATAGGAAGTTAGC------------CCTGCTTCCACTCTTCACAATACCCTTTTATCTTCTTCCACAACATGTATCACAGCTTGTGATTTT 
172i panTro2.chr22                              C 0 C 0                                                                                                                                                          
173s rheMac2.chr10      61888593 115 + 94855758 ------------------------------ATG--TGTCTTCCTGGGGAGGGCTTCAGGGAACACCCCTATAGGAAGTTAGC------------CCCGGTTCCACTCTTCACAATACCCTTTTATCTTCTCCCACCACATGTATC-CAGTTTGTGATTTT 
174i rheMac2.chr10                              C 0 C 0                                                                                                                                                          
175s calJac1.Contig5889    57770 159 +   156393 ttcctgcccatccttgagatccagatgaaaagggtttttttctcagggaaggcttcAGGGAATGCCCCGTTTGAAAGGCAGCCCTGGCTGCACTCCCAGTTCCACTCCT-ATGATACCGTTTTCTCTTCTTCCACAACTTGCATCACAGTTTGTGATTTT 
176i calJac1.Contig5889                         I 198 I 689                                                                                                                                                      
177
178a score=389155.0
179s ponAbe2.chr22      13795794 506 + 46535552 gtattcatggatttctatgactgttcgtttcatatatatttgcatagtggatggaaagctgttgtttaccttggggtcttcatagtgccaggctcagaggaaggacccaaacgtctgctgTGGGAAGGCACACATGATTGAAAGTATGGAGGAAAAGAGTGGATGTCTGGGTGTATGAGCGTTTGTTAGACATTCAGGTCTCCTCAACCTGGTGTAACAGAGAAGAGGCAAATG-ACACCAGGGTGCCTTGCAAGGAGTGGCCAGTCAGCCCAGCCATTCACTGTGTGGCTTCTT-GTGtgccactggccaaaacttgtcataaatagatgagcctacaatgccaggagtgtacacagtgcctcctggaatcgggcagcactccacttgtgcaaTCACACCACAATCTTGGAGATCACGATAAATGCCAACAGCAAATGGATAAGCCTGGGCGAGGTCTTCTTGTTTGTTTGCATTTAGCTCTTCATTTTCttttttttctttctt-------tt 
180s hg18.chr22         16090983 510 + 49691432 GTATTCATAGATTTCTATGACTGTTCGTTTCATATATATTCGCATAGCAGATGGAAAGCTGTTGTTTACCTTGGGGTCTTCATAGTGCCAGGCTCAGAGGAAGGACCCAAACGTCTGCTGCGGGAAGGCACGCATGATTGAAAGTATGGAGGAAAAGAGCGGGTGTTTGGGTGTATGAGTGTTTGTTAGACATTTAGGTCTCCTCAACCTGGTGTAACACAGAAGAGGCAAATG-ACACCAGGGTGCCTTGCAAGGAGTGGCCAATCAGCCCAGCCATTCGCTGTGTGGCTTCTT-GTGtgccattggccaaaacttgtcataaatagatgagcctacaatgccagcagtgtacacagtgcctcctggaatcgggcagcactctacttgtgcaatcatacCACAATCTTAGAGATCATGATAAATGCCAACAGCAAATGGATAAGCCTGGGCAAGTTCTTCTTGTTTGTTTGCATTTAGCTCTTCAttttcttttttttcttttcttttc---tt 
181i hg18.chr22                                 C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
182s panTro2.chr22      16101982 513 + 50165558 GTATTCATAGATTTCTATGGCTGTTCGTTTCACATATATTCGCATAGCAGATGGAAAGCTGTTGTTTACCCTGGGGTCTTCATAATGCCAGGCTCAGAGGAAGGACCCAAACGTCTGCTGCGGGAAGGCACACATGATTGAAAGTATGGAGGAAAAGAGTGGGTGTTTGGGTGTATGAGTGTTTGTTAGACATTTAGTTCTCCTCAACCTGGTGTAACAGGGAAGAGGCAATTG-ACACCAGGGTGCCTTGCAAGGAGTGGCCAATCAGCCCAGCCATTCACTGTGTGGCTTCTT-GTGtgccattggccaaaacttgtcataaatagatgagcctacaatgccagcagtgtacacagtgcctcctggaatcgggcagcactctacttgtgcaatcatacCACAATCTTAGAGATCATGATAAATGCCAACAGCAAATGGATAAGCCTGGGCAAGGTCTTCTTGTTTGTTTGCATTTAGCTCTTCATTTTCTTTTTTttcttttcttttcttttt 
183i panTro2.chr22                              C 0 C 0                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
184s rheMac2.chr10      61888708 511 + 94855758 GTATTCATAGATTTCTATGACTGTTCGTCTCATATCTATTCCCATAGCAGATGGAAAGCTGTTGTTTACCTTAGGGTCTTCATAGTGCCAGGTTCAGAGGAAGGACCCAAATGTCTGCTGTGGGAAGGCACGCATGATTGAAAGTATGGAGGAAAAGAGTGGGTGTTTGGGTGTGTGGGTGTTTGTTAGACATTTAGGTCTCCTCAACCTGGTATAAGAGAGAAGAGGCAAATATACAC---GGTGCCTTGCAAGGAGTGGCCAGTCGGCCCAGCCATTCACTGTGTGGCTTCTT-GTGtgccattggccaaaacttgtcataaatagatgagcctacaatgccagcagtgtacacggtgcctcctggaatcgggcagcattccacttgtgcaaTCACACCACAATCTTGGAGAGCATGATAAATGCCAACAGCACATGGATAAGCCTGGGCGAGGTTTTCTTGTTTGTTTGCATTCAACTCTTCACTTTCTTTTTTTTCCttttttctttcttt 
185i rheMac2.chr10                              C 0 I 300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
186s calJac1.Contig6986   137453 503 -   144597 GTGTTCATAGATGTCTATGACCTTTCATTCCGTATACATTCCCATAGCAGATGGAGAGCTGCTGTTTACCGCGGGGTCTTCATAGTGCCAGACTCAGACCAAGGACCCAAACGTCTGCCGTGGGAAGGCGCGCCTGATTGAAAGTGTGGAGAAAAACAGTAGGTATTTGGGTGTGTGGG----TGTTGGACATTTGGGTCTCCTCAACCTGGTGTCACAAGGAAGAGGCAGATG-ACGCCA-GGTGTCTTGAAAGGAATGGCCAGTTAGCTCAGCCGTTCACTGTATGGCTTCTTCGTGtgccattggctgacaattgtcataaacagataagtctaaaatgctggcagtgtgcacagtgcctcccggacctgggcagccctccacctgtgcaatcacactgcggctctgGAGATCATGACAAATGCCAACAGCACATGGATGAGCCTGGGAGAGGCTTTCTTGTTTGTTTGCATTTAGCTCTTCATTTTAtttatttatttttaattt------ 
187i calJac1.Contig6986                         I 7490 C 0                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
188
189a score=210330.0
190s ponAbe2.chr22      13796300 325 + 46535552 ttttttttttttgagacaaagtttcactcttgttgctcaggctggagtgtaatggcacgatctcagctcactgcaacctccgcctcctgggttcaaagtgattctcctgcctcagcctcccgcgtaggtgggattacaggcatgtgccaccacgcccggctaatt--ttgc-atttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgggattaca-ggcatgagccactgcacctggc----tTTTTAAAtttttttattttttatttttatt 
191s hg18.chr22         16091493 325 + 49691432 ttttttttttttgagacaaagtttcactcttgttgcccaggctggagtgtaatggcacgatctcagctcactgcaacctccgtctcctgggttcaaagcaattctcctgcctcggcctcccgcgtagctggtattatagccatgcgccaccacgcctggctaatt--ttgc-attttcagtagagatggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattata-ggcatgagtcaccgcacccggc----tTTTTAAAtttttttattttttacttttatt 
192i hg18.chr22                                 C 0 C 0                                                                                                                                                                                                                                                                                                                                       
193s panTro2.chr22      16102495 325 + 50165558 ttttttttttttgagacgaagtttcactcttgttgcccaggctggagtgtaatggcacgatctcagctcactgcaacctccgtctcctgggttcaaagcaattctcctgcctcggcctcccgcgtagctgggattacagccatgcgccaccacgcccggctaatt--ttgc-attttcagtagagatggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattata-ggcatgagtcaccgcaccgggc----tTTTTAAAtttttttattttttatttttatt 
194i panTro2.chr22                              C 0 C 0                                                                                                                                                                                                                                                                                                                                       
195s rheMac2.chr10      61889519 304 + 94855758 tttttttttttttagatggagtcttgctc-cattgctcaggctggagtgcaatggcacaatctcgg--------------------ctgagtc--aagcaattct-ctgactcagcctcccaagtagctggaattacaggtgcctgccaccacatcgggctaatt--tttctatttttagtagagatggtgtttcaccatcttggccaggctggtcttgaactcctgacctt--gtgatccacccaccttgacctcccaaagtgctgggattaca-ggcatgagccaccgcgcccagccTAGCTCTTCAttttcttttttttttttttttttt 
196i rheMac2.chr10                              I 300 C 0                                                                                                                                                                                                                                                                                                                                     
197s calJac1.Contig6986   137956 318 -   144597 ttttttttttttgagacagagtttcgtgcttgttacccaggctggagtgcaatggcgtgatctcggctcacggcaacctccgcctcctgggttc-aggcaattctcctgcctcagcctcccgagtagctgggactacaggcacgcgccaccgtgcccagctaatttattgt-atttttagtagagacggggtgtcaccatgttgaccaggacggtctcgatctcttgacctc--atgatccacccgcctcagcctcccaaagtgctgggattacagggcgtgagccactgcgcccggc--------cAATTTTCTTTATTCATTCCTATT--- 
198i calJac1.Contig6986                         C 0 M 888                                                                                                                                                                                                                                                                                                                                     
199
200a score=320686.0
201s ponAbe2.chr22      13796625 431 + 46535552 ttttagatggagtctcactctgtcacccaggctggagtgcaatggcgcaatctcggctcactgcaacctctgccttccaggttcaagcaattct-ctgactcagcctcccgagtagctgggattataggcacccaccaccacaccgggcgaatttttc-tattttttagtagagat-ggggtttcatcatcttggccaggctggtcttgaactcctgaccttgtgatccactcaccttggcctcccaaagtgctgggattacaggcattagccactgcgcccggccTAGCTCGTCATTTTCAGTGCAACACTGAAACACCCCTAGGGATCAAGCCCAAGCCACTTGCCT-CCATTTTTCTGTTTCTCGTCTCCCACACACtctttttttgttttttttgagacgggagtctcgctctgtcacccaggctggagtg 
202s hg18.chr22         16091818 432 + 49691432 ttttagatggagtc…

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