/test-data/motifs1.tabular
https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 122 lines · 122 code · 0 blank · 0 comment · 0 complexity · ba061e703bf1942ea65a7d0a6689ea91 MD5 · raw file
- deletionHoptspot1 [A/C][G/T][A/G][A/G]GT
- deletionHoptspot1rev TG[A/G][A/G][G/T][A/C]
- deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA
- deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T]
- deletionHoptspot2 [C/T][C/T][C/T]TG
- deletionHoptspot2rev GT[C/T][C/T][C/T]
- deletionHoptspot2comp [A/G][A/G][A/G]AC
- deletionHoptspot2revcomp CA[A/G][A/G][A/G]
- deletionHoptspot3 CAG[A/G]
- deletionHoptspot3rev [A/G]GAC
- deletionHoptspot3comp GTC[C/T]
- deletionHoptspot3revcomp [C/T]CTG
- dnaPolPauseFrameshift1 GAG
- dnaPolPauseFrameshift1comp CTC
- dnaPolPauseFrameshift2 ACG
- dnaPolPauseFrameshift2rev GCA
- dnaPolPauseFrameshift2comp TGC
- dnaPolPauseFrameshift2revcomp CGT
- dnaPolPauseFrameshift3 GC[G/C]
- dnaPolPauseFrameshift3rev [G/C]CG
- dnaPolPauseFrameshift3comp CG[G/C]
- dnaPolPauseFrameshift3revcomp [G/C]GC
- dnaPolPauseFrameshift4 [A/T]GGAG
- dnaPolPauseFrameshift4rev GAGG[A/T]
- dnaPolPauseFrameshift4comp [A/T]CCTC
- dnaPolPauseFrameshift4revcomp CTCC[A/T]
- dnaPolPauseFrameshift5 TCCCCC
- dnaPolPauseFrameshift5rev CCCCCT
- dnaPolPauseFrameshift5comp AGGGGG
- dnaPolPauseFrameshift5revcomp GGGGGA
- dnaPolPauseFrameshift6 CTGGCG
- dnaPolPauseFrameshift6rev GCGGTC
- dnaPolPauseFrameshift6comp GACCGC
- dnaPolPauseFrameshift6revcomp CGCCAG
- dnaPolPauseFrameshift7 ACCC[A/T][A/G]
- dnaPolPauseFrameshift7rev [A/G][A/T]CCCA
- dnaPolPauseFrameshift7comp TGGG[A/T][T/C]
- dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT
- dnaPolPauseFrameshift8 TTTT
- dnaPolPauseFrameshift8comp AAAA
- dnaPolPauseFrameshift9 TGG[A/C/G/T]GT
- dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT
- dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA
- dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA
- dnaPolPauseFrameshift10 ACCCCA
- dnaPolPauseFrameshift10comp TGGGGT
- indelHotspot1 GTAAGT
- indelHotspot1rev TGAATG
- indelHotspot1comp CATTCA
- indelHotspot1revcomp ACTTAC
- insertionHotspot1 AT[A/C][A/C]GCC
- insertionHotspot1rev CCG[A/C][A/C]TA
- insertionHotspot1comp TA[T/G][T/G]CGG
- insertionHotspot1revcomp GGC[T/G][T/G]AT
- insertionHotspot2 TACC[A/G]C
- insertionHotspot2rev C[A/G]CCAT
- insertionHotspot2comp ATGG[T/C]G
- insertionHotspot2revcomp G[T/C]GGTA
- topoisomeraseCleavageSite1 CAT
- topoisomeraseCleavageSite1rev TAC
- topoisomeraseCleavageSite1comp GTA
- topoisomeraseCleavageSite1revcomp ATG
- topoisomeraseCleavageSite2 CT[T/C]
- topoisomeraseCleavageSite2rev [T/C]TC
- topoisomeraseCleavageSite2comp GA[A/G]
- topoisomeraseCleavageSite2revcomp [A/G]AG
- topoisomeraseCleavageSite3 GT[T/C]
- topoisomeraseCleavageSite3rev [T/C]TG
- topoisomeraseCleavageSite3comp CA[A/G]
- topoisomeraseCleavageSite3revcomp [A/G]AC
- topoisomeraseCleavageSite4 [A/G]A[T/G]
- topoisomeraseCleavageSite4rev [T/G]A[A/G]
- topoisomeraseCleavageSite4comp [T/C]T[A/C]
- topoisomeraseCleavageSite4revcomp [A/C]T[T/C]
- topoisomeraseCleavageSite5 [T/C]CCTT
- topoisomeraseCleavageSite5rev TTCC[T/C]
- topoisomeraseCleavageSite5comp [A/G]GGAA
- topoisomeraseCleavageSite5revcomp AAGG[A/G]
- topoisomeraseCleavageSite6 [T/C]TA
- topoisomeraseCleavageSite6rev AT[T/C]
- topoisomeraseCleavageSite6comp [A/G]AT
- topoisomeraseCleavageSite6revcomp TA[A/G]
- translinTarget1 ATGCAG
- translinTarget1rev GACGTA
- translinTarget1comp TACGTC
- translinTarget1revcomp CTGCAT
- translinTarget2 GCCC[A/T][G/C][G/C][A/T]
- translinTarget2rev [A/T][G/C][G/C][A/T]CCCG
- translinTarget2comp CGGG[A/T][G/C][G/C][A/T]
- translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC
- vDjRecombinationSignal1 CACAGTG
- vDjRecombinationSignal1rev GTGACAC
- vDjRecombinationSignal1comp GTGTCAC
- vDjRecombinationSignal1revcomp CACTGTG
- vDjRecombinationSignal2 ACAAAAACC
- vDjRecombinationSignal2rev CCAAAAACA
- vDjRecombinationSignal2comp TGTTTTTGG
- vDjRecombinationSignal2revcomp GGTTTTTGT
- x-likeSite1 CCG
- x-likeSite1rev GCC
- x-likeSite1comp GGC
- x-likeSite1revcomp CGG
- x-likeSite2 GCTGGTGG
- x-likeSite2rev GGTGGTCG
- x-likeSite2comp CGACCACC
- x-likeSite2revcomp CCACCAGC
- x-likeSite3 GGGCAGGA[A/C/G/T]G
- x-likeSite3rev G[A/C/G/T]AGGACGGG
- x-likeSite3comp CCCGTCCT[A/C/G/T]C
- x-likeSite3revcomp C[A/C/G/T]TCCTGCCC
- x-likeSite4 GC[A/T]GG[A/T]GG
- x-likeSite4rev GG[A/T]GG[A/T]CG
- x-likeSite4comp CG[A/T]CC[A/T]CC
- x-likeSite4revcomp CC[A/T]CC[A/T]GC
- x-likeSite5 GGAGGTGGGCAGGA[A/G]G
- x-likeSite5rev G[A/G]AGGACGGGTGGAGG
- x-likeSite5comp CCTCCACCCGTCCT[T/C]C
- x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC
- x-likeSite6 AGAGGTGGGCAGGTGG
- x-likeSite6rev GGTGGACGGGTGGAGA
- x-likeSite6comp TCTCCACCCGTCCACC
- x-likeSite6revcomp CCACCTGCCCACCTCT