/test-data/motifs1.tabular
Unknown | 122 lines | 122 code | 0 blank | 0 comment | 0 complexity | ba061e703bf1942ea65a7d0a6689ea91 MD5 | raw file
1deletionHoptspot1 [A/C][G/T][A/G][A/G]GT 2deletionHoptspot1rev TG[A/G][A/G][G/T][A/C] 3deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA 4deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T] 5deletionHoptspot2 [C/T][C/T][C/T]TG 6deletionHoptspot2rev GT[C/T][C/T][C/T] 7deletionHoptspot2comp [A/G][A/G][A/G]AC 8deletionHoptspot2revcomp CA[A/G][A/G][A/G] 9deletionHoptspot3 CAG[A/G] 10deletionHoptspot3rev [A/G]GAC 11deletionHoptspot3comp GTC[C/T] 12deletionHoptspot3revcomp [C/T]CTG 13dnaPolPauseFrameshift1 GAG 14dnaPolPauseFrameshift1comp CTC 15dnaPolPauseFrameshift2 ACG 16dnaPolPauseFrameshift2rev GCA 17dnaPolPauseFrameshift2comp TGC 18dnaPolPauseFrameshift2revcomp CGT 19dnaPolPauseFrameshift3 GC[G/C] 20dnaPolPauseFrameshift3rev [G/C]CG 21dnaPolPauseFrameshift3comp CG[G/C] 22dnaPolPauseFrameshift3revcomp [G/C]GC 23dnaPolPauseFrameshift4 [A/T]GGAG 24dnaPolPauseFrameshift4rev GAGG[A/T] 25dnaPolPauseFrameshift4comp [A/T]CCTC 26dnaPolPauseFrameshift4revcomp CTCC[A/T] 27dnaPolPauseFrameshift5 TCCCCC 28dnaPolPauseFrameshift5rev CCCCCT 29dnaPolPauseFrameshift5comp AGGGGG 30dnaPolPauseFrameshift5revcomp GGGGGA 31dnaPolPauseFrameshift6 CTGGCG 32dnaPolPauseFrameshift6rev GCGGTC 33dnaPolPauseFrameshift6comp GACCGC 34dnaPolPauseFrameshift6revcomp CGCCAG 35dnaPolPauseFrameshift7 ACCC[A/T][A/G] 36dnaPolPauseFrameshift7rev [A/G][A/T]CCCA 37dnaPolPauseFrameshift7comp TGGG[A/T][T/C] 38dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT 39dnaPolPauseFrameshift8 TTTT 40dnaPolPauseFrameshift8comp AAAA 41dnaPolPauseFrameshift9 TGG[A/C/G/T]GT 42dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT 43dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA 44dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA 45dnaPolPauseFrameshift10 ACCCCA 46dnaPolPauseFrameshift10comp TGGGGT 47indelHotspot1 GTAAGT 48indelHotspot1rev TGAATG 49indelHotspot1comp CATTCA 50indelHotspot1revcomp ACTTAC 51insertionHotspot1 AT[A/C][A/C]GCC 52insertionHotspot1rev CCG[A/C][A/C]TA 53insertionHotspot1comp TA[T/G][T/G]CGG 54insertionHotspot1revcomp GGC[T/G][T/G]AT 55insertionHotspot2 TACC[A/G]C 56insertionHotspot2rev C[A/G]CCAT 57insertionHotspot2comp ATGG[T/C]G 58insertionHotspot2revcomp G[T/C]GGTA 59topoisomeraseCleavageSite1 CAT 60topoisomeraseCleavageSite1rev TAC 61topoisomeraseCleavageSite1comp GTA 62topoisomeraseCleavageSite1revcomp ATG 63topoisomeraseCleavageSite2 CT[T/C] 64topoisomeraseCleavageSite2rev [T/C]TC 65topoisomeraseCleavageSite2comp GA[A/G] 66topoisomeraseCleavageSite2revcomp [A/G]AG 67topoisomeraseCleavageSite3 GT[T/C] 68topoisomeraseCleavageSite3rev [T/C]TG 69topoisomeraseCleavageSite3comp CA[A/G] 70topoisomeraseCleavageSite3revcomp [A/G]AC 71topoisomeraseCleavageSite4 [A/G]A[T/G] 72topoisomeraseCleavageSite4rev [T/G]A[A/G] 73topoisomeraseCleavageSite4comp [T/C]T[A/C] 74topoisomeraseCleavageSite4revcomp [A/C]T[T/C] 75topoisomeraseCleavageSite5 [T/C]CCTT 76topoisomeraseCleavageSite5rev TTCC[T/C] 77topoisomeraseCleavageSite5comp [A/G]GGAA 78topoisomeraseCleavageSite5revcomp AAGG[A/G] 79topoisomeraseCleavageSite6 [T/C]TA 80topoisomeraseCleavageSite6rev AT[T/C] 81topoisomeraseCleavageSite6comp [A/G]AT 82topoisomeraseCleavageSite6revcomp TA[A/G] 83translinTarget1 ATGCAG 84translinTarget1rev GACGTA 85translinTarget1comp TACGTC 86translinTarget1revcomp CTGCAT 87translinTarget2 GCCC[A/T][G/C][G/C][A/T] 88translinTarget2rev [A/T][G/C][G/C][A/T]CCCG 89translinTarget2comp CGGG[A/T][G/C][G/C][A/T] 90translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC 91vDjRecombinationSignal1 CACAGTG 92vDjRecombinationSignal1rev GTGACAC 93vDjRecombinationSignal1comp GTGTCAC 94vDjRecombinationSignal1revcomp CACTGTG 95vDjRecombinationSignal2 ACAAAAACC 96vDjRecombinationSignal2rev CCAAAAACA 97vDjRecombinationSignal2comp TGTTTTTGG 98vDjRecombinationSignal2revcomp GGTTTTTGT 99x-likeSite1 CCG 100x-likeSite1rev GCC 101x-likeSite1comp GGC 102x-likeSite1revcomp CGG 103x-likeSite2 GCTGGTGG 104x-likeSite2rev GGTGGTCG 105x-likeSite2comp CGACCACC 106x-likeSite2revcomp CCACCAGC 107x-likeSite3 GGGCAGGA[A/C/G/T]G 108x-likeSite3rev G[A/C/G/T]AGGACGGG 109x-likeSite3comp CCCGTCCT[A/C/G/T]C 110x-likeSite3revcomp C[A/C/G/T]TCCTGCCC 111x-likeSite4 GC[A/T]GG[A/T]GG 112x-likeSite4rev GG[A/T]GG[A/T]CG 113x-likeSite4comp CG[A/T]CC[A/T]CC 114x-likeSite4revcomp CC[A/T]CC[A/T]GC 115x-likeSite5 GGAGGTGGGCAGGA[A/G]G 116x-likeSite5rev G[A/G]AGGACGGGTGGAGG 117x-likeSite5comp CCTCCACCCGTCCT[T/C]C 118x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC 119x-likeSite6 AGAGGTGGGCAGGTGG 120x-likeSite6rev GGTGGACGGGTGGAGA 121x-likeSite6comp TCTCCACCCGTCCACC 122x-likeSite6revcomp CCACCTGCCCACCTCT