/test-data/motifs1.tabular

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 122 lines · 122 code · 0 blank · 0 comment · 0 complexity · ba061e703bf1942ea65a7d0a6689ea91 MD5 · raw file

  1. deletionHoptspot1 [A/C][G/T][A/G][A/G]GT
  2. deletionHoptspot1rev TG[A/G][A/G][G/T][A/C]
  3. deletionHoptspot1comp [G/T][A/C][C/T][C/T]CA
  4. deletionHoptspot1revcomp AC[C/T][C/T][A/C][G/T]
  5. deletionHoptspot2 [C/T][C/T][C/T]TG
  6. deletionHoptspot2rev GT[C/T][C/T][C/T]
  7. deletionHoptspot2comp [A/G][A/G][A/G]AC
  8. deletionHoptspot2revcomp CA[A/G][A/G][A/G]
  9. deletionHoptspot3 CAG[A/G]
  10. deletionHoptspot3rev [A/G]GAC
  11. deletionHoptspot3comp GTC[C/T]
  12. deletionHoptspot3revcomp [C/T]CTG
  13. dnaPolPauseFrameshift1 GAG
  14. dnaPolPauseFrameshift1comp CTC
  15. dnaPolPauseFrameshift2 ACG
  16. dnaPolPauseFrameshift2rev GCA
  17. dnaPolPauseFrameshift2comp TGC
  18. dnaPolPauseFrameshift2revcomp CGT
  19. dnaPolPauseFrameshift3 GC[G/C]
  20. dnaPolPauseFrameshift3rev [G/C]CG
  21. dnaPolPauseFrameshift3comp CG[G/C]
  22. dnaPolPauseFrameshift3revcomp [G/C]GC
  23. dnaPolPauseFrameshift4 [A/T]GGAG
  24. dnaPolPauseFrameshift4rev GAGG[A/T]
  25. dnaPolPauseFrameshift4comp [A/T]CCTC
  26. dnaPolPauseFrameshift4revcomp CTCC[A/T]
  27. dnaPolPauseFrameshift5 TCCCCC
  28. dnaPolPauseFrameshift5rev CCCCCT
  29. dnaPolPauseFrameshift5comp AGGGGG
  30. dnaPolPauseFrameshift5revcomp GGGGGA
  31. dnaPolPauseFrameshift6 CTGGCG
  32. dnaPolPauseFrameshift6rev GCGGTC
  33. dnaPolPauseFrameshift6comp GACCGC
  34. dnaPolPauseFrameshift6revcomp CGCCAG
  35. dnaPolPauseFrameshift7 ACCC[A/T][A/G]
  36. dnaPolPauseFrameshift7rev [A/G][A/T]CCCA
  37. dnaPolPauseFrameshift7comp TGGG[A/T][T/C]
  38. dnaPolPauseFrameshift7revcomp [T/C][A/T]GGGT
  39. dnaPolPauseFrameshift8 TTTT
  40. dnaPolPauseFrameshift8comp AAAA
  41. dnaPolPauseFrameshift9 TGG[A/C/G/T]GT
  42. dnaPolPauseFrameshift9rev TG[A/C/G/T]GGT
  43. dnaPolPauseFrameshift9comp ACC[A/C/G/T]CA
  44. dnaPolPauseFrameshift9revcomp AC[A/C/G/T]CCA
  45. dnaPolPauseFrameshift10 ACCCCA
  46. dnaPolPauseFrameshift10comp TGGGGT
  47. indelHotspot1 GTAAGT
  48. indelHotspot1rev TGAATG
  49. indelHotspot1comp CATTCA
  50. indelHotspot1revcomp ACTTAC
  51. insertionHotspot1 AT[A/C][A/C]GCC
  52. insertionHotspot1rev CCG[A/C][A/C]TA
  53. insertionHotspot1comp TA[T/G][T/G]CGG
  54. insertionHotspot1revcomp GGC[T/G][T/G]AT
  55. insertionHotspot2 TACC[A/G]C
  56. insertionHotspot2rev C[A/G]CCAT
  57. insertionHotspot2comp ATGG[T/C]G
  58. insertionHotspot2revcomp G[T/C]GGTA
  59. topoisomeraseCleavageSite1 CAT
  60. topoisomeraseCleavageSite1rev TAC
  61. topoisomeraseCleavageSite1comp GTA
  62. topoisomeraseCleavageSite1revcomp ATG
  63. topoisomeraseCleavageSite2 CT[T/C]
  64. topoisomeraseCleavageSite2rev [T/C]TC
  65. topoisomeraseCleavageSite2comp GA[A/G]
  66. topoisomeraseCleavageSite2revcomp [A/G]AG
  67. topoisomeraseCleavageSite3 GT[T/C]
  68. topoisomeraseCleavageSite3rev [T/C]TG
  69. topoisomeraseCleavageSite3comp CA[A/G]
  70. topoisomeraseCleavageSite3revcomp [A/G]AC
  71. topoisomeraseCleavageSite4 [A/G]A[T/G]
  72. topoisomeraseCleavageSite4rev [T/G]A[A/G]
  73. topoisomeraseCleavageSite4comp [T/C]T[A/C]
  74. topoisomeraseCleavageSite4revcomp [A/C]T[T/C]
  75. topoisomeraseCleavageSite5 [T/C]CCTT
  76. topoisomeraseCleavageSite5rev TTCC[T/C]
  77. topoisomeraseCleavageSite5comp [A/G]GGAA
  78. topoisomeraseCleavageSite5revcomp AAGG[A/G]
  79. topoisomeraseCleavageSite6 [T/C]TA
  80. topoisomeraseCleavageSite6rev AT[T/C]
  81. topoisomeraseCleavageSite6comp [A/G]AT
  82. topoisomeraseCleavageSite6revcomp TA[A/G]
  83. translinTarget1 ATGCAG
  84. translinTarget1rev GACGTA
  85. translinTarget1comp TACGTC
  86. translinTarget1revcomp CTGCAT
  87. translinTarget2 GCCC[A/T][G/C][G/C][A/T]
  88. translinTarget2rev [A/T][G/C][G/C][A/T]CCCG
  89. translinTarget2comp CGGG[A/T][G/C][G/C][A/T]
  90. translinTarget2revcomp [A/T][G/C][G/C][A/T]GGGC
  91. vDjRecombinationSignal1 CACAGTG
  92. vDjRecombinationSignal1rev GTGACAC
  93. vDjRecombinationSignal1comp GTGTCAC
  94. vDjRecombinationSignal1revcomp CACTGTG
  95. vDjRecombinationSignal2 ACAAAAACC
  96. vDjRecombinationSignal2rev CCAAAAACA
  97. vDjRecombinationSignal2comp TGTTTTTGG
  98. vDjRecombinationSignal2revcomp GGTTTTTGT
  99. x-likeSite1 CCG
  100. x-likeSite1rev GCC
  101. x-likeSite1comp GGC
  102. x-likeSite1revcomp CGG
  103. x-likeSite2 GCTGGTGG
  104. x-likeSite2rev GGTGGTCG
  105. x-likeSite2comp CGACCACC
  106. x-likeSite2revcomp CCACCAGC
  107. x-likeSite3 GGGCAGGA[A/C/G/T]G
  108. x-likeSite3rev G[A/C/G/T]AGGACGGG
  109. x-likeSite3comp CCCGTCCT[A/C/G/T]C
  110. x-likeSite3revcomp C[A/C/G/T]TCCTGCCC
  111. x-likeSite4 GC[A/T]GG[A/T]GG
  112. x-likeSite4rev GG[A/T]GG[A/T]CG
  113. x-likeSite4comp CG[A/T]CC[A/T]CC
  114. x-likeSite4revcomp CC[A/T]CC[A/T]GC
  115. x-likeSite5 GGAGGTGGGCAGGA[A/G]G
  116. x-likeSite5rev G[A/G]AGGACGGGTGGAGG
  117. x-likeSite5comp CCTCCACCCGTCCT[T/C]C
  118. x-likeSite5revcomp C[T/C]TCCTGCCCACCTCC
  119. x-likeSite6 AGAGGTGGGCAGGTGG
  120. x-likeSite6rev GGTGGACGGGTGGAGA
  121. x-likeSite6comp TCTCCACCCGTCCACC
  122. x-likeSite6revcomp CCACCTGCCCACCTCT