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/test-data/motifs1.tabular

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 122 lines | 122 code | 0 blank | 0 comment | 0 complexity | ba061e703bf1942ea65a7d0a6689ea91 MD5 | raw file
  1deletionHoptspot1	[A/C][G/T][A/G][A/G]GT
  2deletionHoptspot1rev	TG[A/G][A/G][G/T][A/C]
  3deletionHoptspot1comp	[G/T][A/C][C/T][C/T]CA
  4deletionHoptspot1revcomp	AC[C/T][C/T][A/C][G/T]
  5deletionHoptspot2	[C/T][C/T][C/T]TG
  6deletionHoptspot2rev	GT[C/T][C/T][C/T]
  7deletionHoptspot2comp	[A/G][A/G][A/G]AC
  8deletionHoptspot2revcomp	CA[A/G][A/G][A/G]
  9deletionHoptspot3	CAG[A/G]
 10deletionHoptspot3rev	[A/G]GAC
 11deletionHoptspot3comp	GTC[C/T]
 12deletionHoptspot3revcomp	[C/T]CTG
 13dnaPolPauseFrameshift1	GAG
 14dnaPolPauseFrameshift1comp	CTC
 15dnaPolPauseFrameshift2	ACG
 16dnaPolPauseFrameshift2rev	GCA
 17dnaPolPauseFrameshift2comp	TGC
 18dnaPolPauseFrameshift2revcomp	CGT
 19dnaPolPauseFrameshift3	GC[G/C]
 20dnaPolPauseFrameshift3rev	[G/C]CG
 21dnaPolPauseFrameshift3comp	CG[G/C]
 22dnaPolPauseFrameshift3revcomp	[G/C]GC
 23dnaPolPauseFrameshift4	[A/T]GGAG
 24dnaPolPauseFrameshift4rev	GAGG[A/T]
 25dnaPolPauseFrameshift4comp	[A/T]CCTC
 26dnaPolPauseFrameshift4revcomp	CTCC[A/T]
 27dnaPolPauseFrameshift5	TCCCCC
 28dnaPolPauseFrameshift5rev	CCCCCT
 29dnaPolPauseFrameshift5comp	AGGGGG
 30dnaPolPauseFrameshift5revcomp	GGGGGA
 31dnaPolPauseFrameshift6	CTGGCG
 32dnaPolPauseFrameshift6rev	GCGGTC
 33dnaPolPauseFrameshift6comp	GACCGC
 34dnaPolPauseFrameshift6revcomp	CGCCAG
 35dnaPolPauseFrameshift7	ACCC[A/T][A/G]
 36dnaPolPauseFrameshift7rev	[A/G][A/T]CCCA
 37dnaPolPauseFrameshift7comp	TGGG[A/T][T/C]
 38dnaPolPauseFrameshift7revcomp	[T/C][A/T]GGGT
 39dnaPolPauseFrameshift8	TTTT
 40dnaPolPauseFrameshift8comp	AAAA
 41dnaPolPauseFrameshift9	TGG[A/C/G/T]GT
 42dnaPolPauseFrameshift9rev	TG[A/C/G/T]GGT
 43dnaPolPauseFrameshift9comp	ACC[A/C/G/T]CA
 44dnaPolPauseFrameshift9revcomp	AC[A/C/G/T]CCA
 45dnaPolPauseFrameshift10	ACCCCA
 46dnaPolPauseFrameshift10comp	TGGGGT
 47indelHotspot1	GTAAGT
 48indelHotspot1rev	TGAATG
 49indelHotspot1comp	CATTCA
 50indelHotspot1revcomp	ACTTAC
 51insertionHotspot1	AT[A/C][A/C]GCC
 52insertionHotspot1rev	CCG[A/C][A/C]TA
 53insertionHotspot1comp	TA[T/G][T/G]CGG
 54insertionHotspot1revcomp	GGC[T/G][T/G]AT
 55insertionHotspot2	TACC[A/G]C
 56insertionHotspot2rev	C[A/G]CCAT
 57insertionHotspot2comp	ATGG[T/C]G
 58insertionHotspot2revcomp	G[T/C]GGTA
 59topoisomeraseCleavageSite1	CAT
 60topoisomeraseCleavageSite1rev	TAC
 61topoisomeraseCleavageSite1comp	GTA
 62topoisomeraseCleavageSite1revcomp	ATG
 63topoisomeraseCleavageSite2	CT[T/C]
 64topoisomeraseCleavageSite2rev	[T/C]TC
 65topoisomeraseCleavageSite2comp	GA[A/G]
 66topoisomeraseCleavageSite2revcomp	[A/G]AG
 67topoisomeraseCleavageSite3	GT[T/C]
 68topoisomeraseCleavageSite3rev	[T/C]TG
 69topoisomeraseCleavageSite3comp	CA[A/G]
 70topoisomeraseCleavageSite3revcomp	[A/G]AC
 71topoisomeraseCleavageSite4	[A/G]A[T/G]
 72topoisomeraseCleavageSite4rev	[T/G]A[A/G]
 73topoisomeraseCleavageSite4comp	[T/C]T[A/C]
 74topoisomeraseCleavageSite4revcomp	[A/C]T[T/C]
 75topoisomeraseCleavageSite5	[T/C]CCTT
 76topoisomeraseCleavageSite5rev	TTCC[T/C]
 77topoisomeraseCleavageSite5comp	[A/G]GGAA
 78topoisomeraseCleavageSite5revcomp	AAGG[A/G]
 79topoisomeraseCleavageSite6	[T/C]TA
 80topoisomeraseCleavageSite6rev	AT[T/C]
 81topoisomeraseCleavageSite6comp	[A/G]AT
 82topoisomeraseCleavageSite6revcomp	TA[A/G]
 83translinTarget1	ATGCAG
 84translinTarget1rev	GACGTA
 85translinTarget1comp	TACGTC
 86translinTarget1revcomp	CTGCAT
 87translinTarget2	GCCC[A/T][G/C][G/C][A/T]
 88translinTarget2rev	[A/T][G/C][G/C][A/T]CCCG
 89translinTarget2comp	CGGG[A/T][G/C][G/C][A/T]
 90translinTarget2revcomp	[A/T][G/C][G/C][A/T]GGGC
 91vDjRecombinationSignal1	CACAGTG
 92vDjRecombinationSignal1rev	GTGACAC
 93vDjRecombinationSignal1comp	GTGTCAC
 94vDjRecombinationSignal1revcomp	CACTGTG
 95vDjRecombinationSignal2	ACAAAAACC
 96vDjRecombinationSignal2rev	CCAAAAACA
 97vDjRecombinationSignal2comp	TGTTTTTGG
 98vDjRecombinationSignal2revcomp	GGTTTTTGT
 99x-likeSite1	CCG
100x-likeSite1rev	GCC
101x-likeSite1comp	GGC
102x-likeSite1revcomp	CGG
103x-likeSite2	GCTGGTGG
104x-likeSite2rev	GGTGGTCG
105x-likeSite2comp	CGACCACC
106x-likeSite2revcomp	CCACCAGC
107x-likeSite3	GGGCAGGA[A/C/G/T]G
108x-likeSite3rev	G[A/C/G/T]AGGACGGG
109x-likeSite3comp	CCCGTCCT[A/C/G/T]C
110x-likeSite3revcomp	C[A/C/G/T]TCCTGCCC
111x-likeSite4	GC[A/T]GG[A/T]GG
112x-likeSite4rev	GG[A/T]GG[A/T]CG
113x-likeSite4comp	CG[A/T]CC[A/T]CC
114x-likeSite4revcomp	CC[A/T]CC[A/T]GC
115x-likeSite5	GGAGGTGGGCAGGA[A/G]G
116x-likeSite5rev	G[A/G]AGGACGGGTGGAGG
117x-likeSite5comp	CCTCCACCCGTCCT[T/C]C
118x-likeSite5revcomp	C[T/C]TCCTGCCCACCTCC
119x-likeSite6	AGAGGTGGGCAGGTGG
120x-likeSite6rev	GGTGGACGGGTGGAGA
121x-likeSite6comp	TCTCCACCCGTCCACC
122x-likeSite6revcomp	CCACCTGCCCACCTCT