/test-data/extract_genomic_dna_out5.fasta
https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 258 lines · 258 code · 0 blank · 0 comment · 0 complexity · db07dc8d87c22de24b74b320d3095b2b MD5 · raw file
- >mm9_chr10_62044837_62045189_+
- AATTACAAGATCGACACACCAAGATAGGCAGATCCATGGTTGGTTTTACT
- TTGTAAATCTAAAAGTATGTTGGAAAACGATGCAATGAATTCTTATCCTT
- TTTCAAAATGAAGAATTTGTGATGGTTAGTGGACAGTTCAGAAGCCTCTC
- TGCAAGAAAGGGGGCGCTGAGAAGTGGTAAAAAAAGGAAGGAAGCACTCG
- GGCTTTGTCAGCAGGGTGGACCCTGGGGTCCACAGTGGGAACAGTCCCTT
- CTGGCCTCTACTCACTGACCAAACGCTTTACTAAAACTCCGCTTCTGGCC
- TCTGTTGCCACCTCCTGGTCGCTGTCCTCGGAAGTTTCTACTTCCTCCTC
- GCT
- >mm9_chr10_75372919_75373002_+
- GCGTCTCGCAGCTTCTGCCCGTCGATCTCCATGTCGAGCCGGATGGGCAC
- CAGCACCTCAGGCTGTGACGCATTCTCATGGATC
- >mm9_chr10_80362428_80363292_-
- ATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTT
- GGATAACTCGGAGCAGGTGAGACATCTCGGGAACCCGGGGTGGTGAGGGG
- CGCGGGGTCAGGAGCGTCTAGGAGGTTGAGAGATGTGCGCGTGCGCGGCC
- TCTAGCCTTAGCTACTGAGGAAGTTGTGCGCGTGCGCGGGGTGAGGACCC
- GGCTTCTGTGCCTAGATCGGTGCAGCCTTCATGGGTGATCCTCGGGTCGT
- GTGACCGTCAGTCAGGGATCCCCCTCCACGCTTTGCAGAAATGCATCGCC
- ATGTGCATGGACCGCTACATGGACGCCTGGAATACCGTGTCCCGCGCCTA
- CAACTCTCGACTGCAGCGGGAACGAGCCAACATGTGACCGGGACCTGTGC
- CTCGGGACACCGTGCTTATGGTCTGAACTGTTTTCCCTGCCAGTTAGGGT
- GTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATC
- GAGGCCTCTCCCCTGGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTG
- AGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCT
- CAGGAGAGCAGGCCAATAAATCGCTGCTGGGGCAGTAAAGCAGGCGTGTC
- ACCTCACTGCTTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGG
- TATCTTTCCCCTTGGGGTCAGTGGGCTGCTGGCTCTCAGGGAATTCGGAG
- CATGATCTCAGGTGTTTGGTCATCCCGGGGAGACCAGCCGAGGTTAAGAA
- GCAAGGCTTCATGTagccttcacctatcatgcatgaggcccagggtgctg
- accttaactctgaat
- >mm9_chr11_7904565_7904642_+
- CATCTTCTATTTGAGCCTCCATCCAGGCACCTCTGAAACAAAGGTGCACT
- CACTGCATGTCCACTTGTCACAGGAGCC
- >mm9_chr11_78140156_78140259_+
- CTGCTTGCTAATTTTCTCTCTTGGGATCAGGGGGACGTGAACTCCAGCCC
- TGACTCGTGCTCCTTATGCTCTGAGTACATAGCAAATAAATGAGAGCAAA
- ACAC
- >mm9_chr11_105616462_105616737_+
- TAGGTGTAATAGTGGAAAACAATAGTTTTTAAACTTCAGAGTCCAGGGCT
- GTAACTCAGTAGTAACAGTGTTCTCTAAGTATGTTATTCTTCCTCTACAT
- GCTGAAATTTTTCATATTTGGAGCATTCACTGTTCCATGTATCAGTAAAT
- TATATTGTGAGCTGTCATCATATCTAAGCACCATATTGAATATTTTTCAT
- GATTAAAATTTGTTGAAACAACAATTCTATGACCGAAAAAAGCAAGGCTT
- TGTAAATAACATGTTTGTTACTAGTA
- >mm9_chr12_30701762_30702509_+
- TGTGGAGTGTACTTATATGATCCCTATGCTGATAGGATTACCTTCCTAGA
- CATAGCTAGACGCAAAGCCACATGTGTAAGGCTGCTGAGCAAAGACAGCA
- TCCCAGCATGGGTGTGTTCACGGTGGATTCACCACGTTGCATATGTAAAG
- TGGTCCCCTTGGCTTACCCTTCACTTTGCTCATGAGATTCAGAAGCTGGT
- GGTCCAGCAGGGGTGAGCATTTGTGAAATAGTAAGCTGAACTTAGTGGTG
- AGATTTCAGAACAGACTTCTGTGAAGTAAGAGATGTAACCATGCATCTAA
- AATCAGATGGCCGTGTAACTGCTCGGGCATAGAAATGGTGGGAGAACCTG
- TCCTGGGTACCTGGCATTTCACATGAGCCCAGGGATATGTCTTGTGCCAA
- GGCACACAAGTGTCCATGGACTTGGACAGGTGCCAAGGGTTTTTGTCTCT
- GTTCCTATGTGGGAGGCTGGCTGTGATTTACATTAATTTCTGTATTTCAA
- ACGAAGATGTCTGCAGATCTCCATTTTGATGTTACAGCCTCATTGCCCAG
- GCAGTGGGCAGTGCCCAGACACCCTTTCTGACTAGCCACTGCATTGGGCT
- TCTGTGATTCAAAGTAGTGTATATATTTATTTACTTCTCTGACTGTGGCC
- AACAGCCAAATGCCATTTTATGTTCCTTGTATTCAGTCCATTACCAAAGA
- GGTGTTTGCACTTTGTAATGATACCTTTCAGTTCAAATAAAAGGACCA
- >mm9_chr13_49159496_49159569_+
- ttttcttttggattacttgatttttttttatttgatcttatttatgatga
- ttttgagtacatttttgaacagtt
- >mm9_chr13_100200304_100200330_+
- TCTCATATGAATAGCCACCCTCTTCTG
- >mm9_chr14_31949103_31949152_+
- GGATGCTATCCGCGATGTGCATGTAAAGGGCCTCATGTACCAGTGGATCG
- >mm9_chr14_67604227_67604668_+
- TTCACCGTGAGAGTTTTCTCCATTTCACTCTTCACTGTGCTGTTCTCTGT
- GCCGCTTTCCTCTTGACTTATAAACATCTGAGCCAGTTTTCAATAAACTT
- AAAACGAAGCCTGCTTCTCATCCCAAATTGTAAACAGGAATAAAGCTTTT
- TAAACCTTATCTTAAATTTTAACTTTGTTGAATTCTGCTTTGTGATAGGA
- CAATCTGTTTCACCCAACAAGAATCTGTGTAGGAGGATGAACATCCCGCA
- TGTTGGAGCTGCAAATCAGCACTGTACAAGCTCACTGATGGACAGCTGTT
- CTGTGATGTATTCCATGATTTTACTAATACTTTCAAAAATGGCAAAACTA
- ACTTCAGTTTTAATGTTGAAAGAAAATCATAAATGTTCCCATAGTTCAAT
- GGCACTGTCGATGAAACTGCTACTGAATTTAGAGAGAAAACG
- >mm9_chr14_75165582_75165744_+
- ggccctgggatgataTAACAGAAGAGTCTAAAGGAGGCTTCTGAGATGTG
- CAGTAGGAAAGCCTGGCACATAATAGGTTATTATCTAAATCCCTTCACTA
- CTCTTCAAAGACAGCAGGATGCCTCTGCTCCCATGTTTTATCTCTACTTA
- TGTGGAATTTATG
- >mm9_chr16_57154027_57154067_+
- GTTGAGGTTTATTTAAGTAAAATGATTTTTTAAAAAAGCAA
- >mm9_chr16_74862302_74862560_+
- GCATTGGCAGCAGATATTGGTACCCAGTGGCACTGCAGAGTACTTACAAT
- CAGGACTCGCTACTGTGCTTCATTCTGCTTTTCTCTCTGCTTCTATTACA
- GTTAAAGTGTTGCTAATTATAGAAACTCTCTGTTTATTGAACCTCGGTGT
- TAAGAAAAACTTGTAATCTTCAGATATGATCCGAAAGATTCCCAAACAAA
- TGTAACAAGGTCCACTTTTGTAGCCCTTTCTACCAGAAcactggttatca
- acctgtggg
- >mm9_chr16_98168779_98168914_+
- CCTATTTATTTCACTAAACATCTGCCTGCTAGCTGAGATAAACATTCTCT
- AAAAAACTGTTTACTGCAAAAAGTGATTACTGTTTTTTATTAGTTTCTTA
- GCATTTGAAATAGTTACATGAATGGAAGGATAGAGT
- >mm9_chr17_8483212_8483268_+
- AGACTTGTCAACAGCTCACCCAATGATGGAACTGAGGCTGCCCCTCAAGT
- GGCCAGA
- >mm9_chr17_30355791_30355913_+
- atctcatacccataagctcagaactcggggtggtaacataggaggactgc
- catgagtgtgactaacctgggctataggaggaggatctaccttaagcaaa
- tgaCCAACAAAACTAACAAGCTC
- >mm9_chr18_39571718_39571880_+
- TATAACATTCCATAAATGTACAATAATCTATTTTTGAGAAGCTCATTTTG
- AAACTTAACACTGTCATTGATAATCTTCAAGTGGTATTTCTTAGGCACCA
- TAAATTTCACATCCAGCTGGGTTACAATTATTTTAAAGTACTTTGAGACC
- AATTTAAACCATT
- >mm9_chr19_17633088_17633203_+
- TGGGAAATGAACTGCATGGCAATGAACCCCAGGGAATTTGGTGGTTAATT
- GTCTAAGGATAAGGACATCAGTTTTGTCTTTTGCATCACTGTGACCTTTG
- CCTCTAATTGTATAGA
- >mm9_chr19_41997624_41997859_+
- gctacacaacgactcacatagagggaagcaggcacacatcagataaaaca
- cAAAAGGATGGGTTGGTGATGGGCATAGTTAATGAGGGCCACTAGGTAAA
- TACACCTGATCCAAAAGTCACGCTACTACTTAGATTCTTCTCTCTGCTAA
- AGACAACAGAAgacatgttagccatgcttgtaatccctgcattggggaga
- tggagtcagaaatatcactgcaagttcacccaatag
- >mm9_chr19_56516515_56516684_+
- TGTATTCATTCACTATTCACTGATTTGTCAGATCATCCATCCACACAGGT
- GCTGAAGAGTAACCCATTTCACTTTGTATACAAGATAATGTTTTTGTACT
- TCAAATACATCTGGAATTCTTTCAAATATTCCAAGATTTTTTTTTTTTCT
- GAATAATCTTTGGTTACCTC
- >mm9_chr2_4543774_4543977_+
- gagccatttctccagccccTTTATGTGGAATATTAACAAGAGAAGACAAC
- ATAAAATGACTTACCATGCTGTGTGGCCTAACAGTGGATGAAGAATGAGT
- GATTTGGGCATTTCTGATAGTATTTATAAAGAAGACTTTTATGACCAAAC
- CACATGTCACAGTAGGGATTTGCTGCACATCTTATGAGAGTTTCTTCTTT
- GTCA
- >mm9_chr2_30200331_30200938_+
- CGCACACAAAGGATTTATTTGCCAGAGAGCAAGCAGACAGGCAGAGGTCA
- GAATGTTAGTTAGAAACTGAAGGAATGACTGCTGTAGCCACTGTGCCCAG
- CCAGAGCCATGAGGGAAGTGGGAGGCAGCACTTGGTGCTGCTGCTCTGGC
- TGACCCTTCTGGTTTCCTGCCACACTCCTAGCCCTGCCTGTGTGCTGCTG
- TCCCCCTCAACCTTCCACAGCCAGAAGGCAGATGTTCTTTCATGCCAAGA
- GCATCCATCCCCAGCATATCCTGGGCCCATGGTGGTGTCAAATGTAGTGA
- CCCTTCTGCCTTAAGGGAGCTGGGAAGCCTGGGGTGTGCAGGGTTGCAGG
- TCAGAAGCAGGACTAGCAGAGGGGCCTGGGGCCATTCTGTCTTGTGGGCT
- CTTTAATAGCTGAATGACGGGCACAGCCAGAAAAGGGTTAGGTCCCTTAT
- CCTAAGCAGCTCTGTGGCCAGCAGACGACTCTAAGTGGCAGAGCCTGGGA
- AGGGGCTGCTTAGCTGAGAAGTTCCAGGTAGGTGACAGGAACCTTGCCCT
- TCTTGTTGCCTCTCTCACCAATGAGCCAGTCGGGATCCATGCCTGGCAGG
- CTGTAGAC
- >mm9_chr2_106644220_106644341_+
- attcttaaggtaaatacctaggagtgatgtaacccagtcatagggaagaa
- ctacttttaatttgttgagcaacccccaacctgattttgacacaggtttg
- agtagtttacacttctactaac
- >mm9_chr2_125388931_125389219_+
- AGAGCACACAGCACATCACTTAGGCCTCCAACATTAAGGCAGCGCAAGTG
- CCTCAAGTAACTGAGAATACTTTACTCAGATACAAGGGTATCAAAAACAT
- GAGAACTGGCAGGAAGACCTCACAATGGTTTGTTAGCATCAAGTATTACC
- ATCCAGTTTCCTGTTTAAATAGTAATTAATGACTATTCTGAAATAAGGCA
- AATAATTACTCAAGCGGGCTGTCAAAGCCACTATCCTGTTGGCTGGGCAT
- CGGAGCAGTTAACTTTATCAAAGGCTTCTGACACAATGA
- >mm9_chr3_130936639_130936898_+
- CGAGGCTGCAGGCTGCAAATGTTCCCAGGCAGGCAAGACCTCACGTCCTA
- CTGGCTGCTGCCCTTGGGTGCATCTGTAGGCCCCGTGGCTCCTGCCCCTG
- GGGTTCAACACCGATAAACATAGAATACTCATTTTCAGAAGACCTGAGGG
- AATGAGTCTAAGCAACGCTTTTTACAAAAAGTGGCAAGGTTCAGGAAAAA
- AAAAAAAAAAGATGTTGCTCCAAGGCACCAAGGGTGTAATTTTTTTTCAG
- AAAAAGTCAG
- >mm9_chr3_136592671_136592771_+
- TGTCAGCCCATCACATTTTAGTGACAACAGTCATAGCCTTTATTTTCAGA
- TGACTTTCCTCTAAAACCACTGTCTATGAGTTGCCCCCCAAAACTCAAAA
- A
- >mm9_chr3_152861374_152861508_+
- ATCAAAAGCGACATGCAAGCATCTTGCTCTCACCACAGATCACTGAGACA
- TTAAGAGTGACGTCTCTTGAACTGTTGGCACGCCTAAGTTATTTCAGCAT
- TTCTTGCTCAGCAGTTGTTCTCTTGGCTTCCTCTG
- >mm9_chr4_13715310_13715630_+
- AACACATGGCCACATCATGTGATATTTTCAAAACACTTACACATAGCTTT
- GAGAAGGTCCCTGCAGGAATGATCCATCCTCTCACAGTTGGCCCATTTTT
- TAACAGCATATCTGCATTTTCCATTTAGGAGAGCTATATATTATTAGCTT
- ACATTTTTGGGTAGTAAAACAGTGCATTGCTGATTGTAAAACATGGACTT
- TATTATCTGCTGAAAATTGATTTGGCATTTATAGCCACTGTGTATTAGAC
- TGTTTTTCTGTTTTTAACATCAATGCTTAAAAGCGATGATTTGTGTTTaa
- aaaaattaaaaaaataaaata
- >mm9_chr4_147515029_147515097_+
- GCTGACGTGCTCTCCGAGTTCCTGGAGGTGGCCGTGCACCTGATTCTCTA
- TGTGCGCGAGGTCTACCCG
- >mm9_chr5_3949522_3949685_+
- AGTCCCAACCACCCCCTTGTTTAATGTATAACTTTCTGAAATGGGAGCGT
- TAGAATGGATTAAAATGGTTGGTAGGTGGTTGGATCACCAACCAAGACCA
- GAAATAGAGGGGTAGGCTGCTCAGGAGAGTATTGGGAGGGTAGCTATTAT
- TTGCATTTTGTGCT
- >mm9_chr5_68089694_68089831_+
- CAATGATAGAGAAGACTAAAATAAAAGCAGGCATGCTGGCACAAGCGACA
- GAAGGAAAAAGCCTCACCCGGCCCTGTTTGAGGCCACTCCTGGTGGCTCC
- TTTTCCAAGGACCATGCGGTCAAGCCTCTGAGTTGTTC
- >mm9_chr5_122819526_122819619_+
- CTTTAGAAAAGATGCATCTGTCATTGATTTAGGGATATGAATTGTTTGGA
- TTTGAGTAGTTTTCCATAACTCCTGCAGTTTGGCAATGTGTGCG
- >mm9_chr5_145619548_145619710_+
- CGGCGTTCTGAAAACTGTGCTCCGGGATGAGATCATTGCTTGGCACAAAA
- AGACACAGGAGGACACTTCCTCTCCACTGTCGGCCGCAGGGCAGCCTGAG
- AACATGGACAGCCAGCAGCTGGTTTCCTTAGTTCAGAAAGCCGTCACTGC
- CATCATGACCCGC
- >mm9_chr6_83928984_83929105_+
- ACAGGAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATG
- AAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAA
- GGAAAAAGAAAGGAAGCCCTCA
- >mm9_chr6_118857949_118858148_+
- CCAGGCTTGCTAGTTGGTGCAGTTAGCTACATCTCAGGACAGAGACAAGG
- TACTCTGAGCTCCCCTTGAACTGCCACACAAGCTGTCTCCTGGATGCCAA
- GCAGAGAAACCTGGAGACAACAATCATCATACTCAAAACCAGGATCTCTT
- TCTTAAGACTTTTGTATTTTGTCCCAGCCCTAACCCTGAGTTCTGCTGAA
- >mm9_chr7_85554210_85554343_+
- GTGAAACATCATGCTTCTGCATCAAGTTATTAGTGGGAAACCTGTAAAAG
- TTGACATTGAATGCTGATAACAAATTACTTTCATCCTGTCTCATAATGAA
- TCCTACATCAAGACAAGGCAAGTGAGAAAGAGGG
- >mm9_chr7_104055491_104055589_+
- ACATTTCTCCTCTCTTGGGGGAGCGCATCTCCTTGGGTGTGTCCACATCC
- GCCCCTAGGTACCCAGTGTGATGTGAGACACGAGTGTCTGTGCTAACTT
- >mm9_chr8_9970398_9970545_+
- AGTCTTCACCAAAATTAAGTCTCAGCTAACTTAAAAGTTGCAAGGATTTT
- TTTCAATAAAATTAATATCTTAAGTGTTTGGTGTTTAGATGATTCTCTCT
- CAACTTCCCCCACATTATCAAAAAACATTTGATGAACCTTAAAAACTC
- >mm9_chr9_20449846_20449932_+
- CCAGCACCGATGACACCATCGGCGACTTGAAGAAACTGATAGCTGCTCAA
- ACTGGCACCCGCTGGAACAAGATCGTTCTTAAAAAGT
- >mm9_chr9_107445870_107445930_+
- CAAGCAGAAGCTGGTGCCCATCATGACCATCCTGCTGGAAGAGCTGAATG
- CCTCCGGCCGC
- >mm9_chr9_120860476_120860606_+
- CTGCCATTGTACGCACCATGCAGAATACAAATGATGTAGAGACAGCTCGT
- TGTACTGCTGGGACTCTGCACAACCTTTCTCACCACCGCGAGGGCTTGCT
- GGCCATCTTTAAGTCTGGTGGCATCCCAGCG
- >mm9_chrX_10274057_10274087_+
- ACTTCGCTGTCATCATTTGTACAAACTCTTT
- >mm9_chrX_39881431_39881678_+
- AGCTAAAAAGAGTCCTTTTCTGACAGAAAGGCTGGACTTCTCCTTTTCAC
- CGTTTCTCTTACTGATGCTTTTGCCAGAAGAACAGTAAAGATTTAGACAC
- TGTCATGATTCATACACGTAAAATATTTTTCAAGGACACAATCTGATATA
- CTAACATTTATTTAAGAGGTTAAAGTCCACCACTAAATCTAAGGAAAGAT
- TTTTAACTGCCAAACACATTTCCTTTGACAAATAATGTAAGATGACAA
- >mm9_chrX_148249672_148249713_+
- AATGCTAGTATGAACAGTGGGAGGAATGAGCAAAATGTTACA
- >mm9_chrX_148481505_148482455_+
- CGCCACAACCTGCTACAGGCCTGTAAGATGCAGGACATCAAACTGCCACT
- GTCAAAGGGCACCATGGATGATATTAGTCAGGAAGAAGTGAGTATTATGG
- TGGGTGGTAGGAGTCATCTATGAATATTTAACCAGTAATGGGAGATTACA
- GATGGCCAGGAAGGGCAGGCAACAGATAGGACCACATAGAGTTGTGAGGG
- GCATAAAGATGGATGCAGAAGAAATGTGGCAAGGTGGAAGTAGTGAAGTC
- AGGCTTTGGTATGAGAGAGACATTGATTTGAGAGGAGAGCTGCAAGCCAG
- TGAGTACTCAGAAAGACCAAGAATGGGTCATTAATCTTAAGGATTTGAGC
- TCTTAGCTGCAGCAGATACTGGGCATGGGTAGGAGTGAGAATTGAGGAGC
- AGAGGAAGATGGGAAACTGGAGAACCTAAGGAGACTGATAGCTTAGCTGC
- AGTAAGGGAGGTTGGCCAGAAGAGGGTTGGGTAGGGGACTCAGCAAGGCA
- GAACTAAGGAAGCTTAGGTGGAGGGGAAGGAACAACATCTGAGCAACTAA
- AGCACTCTATCAACTGGAAGTGCAAGATGGTAGTGAGGGGTGGACAGGTG
- TAACTGAGTAACTCTTTGTAGGTAGCCTTTCAGTTTAATTCAGTAAAATA
- TTTTGAACACTAGTATTCCAGATACTGGTAGGCCATGACTTAACCATTCC
- TAATGTTAATCTCAGCTGTGCTAGCTGAGCTTGTGTTCACATTAGACATG
- AAGAAACTTAGTAAAAGGTAGAGCCCAGTTTTCGGTTTGGACCTTCCTGT
- TGGCCTCTGCTTCCGTGCCATCTAGCAAAGGAGTTCCTAATCTCTAGAGG
- GATACAAATGACTAGTCTGCTCCATCTGCCTCTTCCAACATTGCAGGGTA
- GCTCCCAGGGAGAAGAGTCAGTGAGTGGTTCCCAGAGAACATCCAGTATC
- T