/test-data/Interval2Maf_pairwise_out.maf

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 49 lines · 37 code · 12 blank · 0 comment · 0 complexity · 3820ecd84e2034f0b93354ee35e6c1e8 MD5 · raw file 

    

  1. ##maf version=1
    2. 

  2. a score=10458
    3. 

  3. s hg17.chrX   3816458 525 - 154824264 tGATGCACGTTTTCTCTTTTCATACTCATCTT--CAGTTATTCCTTGACACAAACCTGGTTA---CTAGTGCTATTGGCTACATGGCCCCTGTGCCTTAACTTCCCTCATGGCTCCTCCTCCCTGCAGCCTCTGAAGGTTCTCTGTGTAATGAATT--AATTAGCTTTGCTTTTTTCTCCCTTTCCCCC-----CCTCTTTTTCCTGGCCTCT---------AGAAGAAAACACCAGCAGCCCCAGCAAAGAAAACCAGCACTACCTTCAACATCGTGGGGACCACCTATCCCATCAACCTGGCCAAGGACACTGAATTTTCCACCATCTCCAAGGGCGCTGCTCCCAGTGCCTCCTCAACCCCAACAATCATTGCTTCACCCAAGGCCACCTACGTGCAGGACAGCCCGACTGAGACCAAGA---CCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTTCCTGTGCTCTTTGCCATATTCAATCTGGTCTATTGGGCCACATATGTCAACCGGGAGTCAGCTATCAAGGGCATGA 
    4. 

  4. s fr1.chrUn 343715247 529 - 349519338 TGGTCAACATTTTTTTCTTTTCTACTTTTCTTTTCAGGAACCGTTTCAGGCTAACATGGCCAGGATTAAAGATAT-GGTTAGGCTTTTGTTTTGTTCTTGTGTGTGTCGTGTCTCGTGGT----GTTGCTTCTATTTCCTCTTCATGAGTTCAAATGGAAGTATTGTTAAGTTTGTTGCCCCCGACCCTAACGACCTCTGCTTTATGGCCTCTTCTCTTTTCAGAGGAGAGAATCTGAGAATCTGACCAAAAAGACGAACAACACCTTCAACATCGTCGGGACGACCTACGCCATCAACGTGGCGAAGGACCAGGGCTTAACCACCATCTCCAAAAGCGCCACCACCGGCGCGCC----GGCCAAACAGCACTACCTGCACAAAA-----------TGGACGACCCCTACACAGAGGCCAAGAAATCCTACAACCGAGTCAGCATAGTGGACAAAATATCACGCATCATTTTCCCAGTTCTGTTCTTCATCTTCAACTTGGGCTACTGGGCCACATATATCAACAGGAAGCCCATTATTATGAACGCGA 
    5. 

  5. 

  6. a score=12779
    7. 

  7. s hg17.chrX   3795168 357 - 154824264 aGGGCCATTTTGAGTGGGGTAAAGCTTCTCCTTTCAAATAGGAAA----TTAGTGATTTCATCG--AATAAGC-------TCTCAATGTCTTCCAGTTGCAACTGGTTCTCATCTTTCCTCT----CCTCAGGTGTCACCACTGTGCTTACCATGACCACCTTGAGTATCAGTGCCAGAAATTCCTTACCTAAAGTGGCATATGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCCACTGTCAACTATTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTGCCAGAGGCCCTGGAGATGAAGGTGAGATA----TAGCAAAAGAGAAACTGAGAAG 
    8. 

  8. s fr1.chrUn 343710815 364 - 349519338 TGAGCCAATTT--------TGAAGTGACAATTTTCAAATGTGCCACATTTTAGTAGCAGCAAAGTCAGAAAGCGACTTTTCCTCTACATCACTTCTCTGATCTGTGTTCTGATGTTTTCCTTTCATCCTCAGGGGTCACCACTGTGCTTACCATGACCACCCTGAGCATCAGTGCTAGAAACTCCCTCCCTAAGGTGGCCTACGCCACCGCCATGGACTGGTTCATGGCGGTGTGCTACGCCTTTGTCTTCTCTGCCTTGATTGAGTTTGCGACGGTCAACTACTTCACCAAACGCAGCTGGGCATGGGATGGGAAAAA------AGAGGGCATGGAAATAAGGGTGAGTGATTTTTAATCAAATATATACTGATACG 
    9. 

  9. 

  10. a score=10363
    11. 

  11. s hg17.chrX   3787425 174 - 154824264 TACTCTCTCTTTAGGAGAATATGTCGTCATGACAACCCACTTCCATCTCAAGCGAAAAATTGGCTACTTTGTGATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCGTTCTGGCTCAACAGAGAGTCTGTTCCTGCCCGTACAGTCTTTGGTGAGTG 
    12. 

  12. s fr1.chrUn 343708230 174 - 349519338 TCCTCCCGCTGCAGGCGAATATGTTGTGATGACAACATATTTCCATTTGAAAAGGAAAATTGGCTATTTCGTGATTCAAACCTACCTCCCGTGCATCATGACTGTCATTCTGTCTCAAGTCTCCTTCTGGCTGAACCGAGAATCGGTCCCTGCTCGCACCGTGTTCGGTGAGTG 
    13. 

  13. 

  14. a score=31
    15. 

  15. s hg17.chrX  3787284 100 - 154824264 ATTTTGTGATTATTAAAGGGCTCTAGTTATATGAACTTGGGAGATGCTGGAATATTGAATATAAG----ATTAAAGAGCTTTGTGAAT--------TGAATT-----GGGGCCCAAC 
    16. 

  16. s fr1.chrUn 62078707 109 - 349519338 AGTTTGTGAGGCCTAAATGCCAAAAGT-------ACTTGA-ACAGGCTTAAGAATGGATCATGAATTTTCTTAAATAAATCTGTTAATCCAGAAAGTAAACTCTGGGGGGGTCCAGA 
    17. 

  17. 

  18. a score=4963
    19. 

  19. s hg17.chrX   3776942 285 - 154824264 aCTTCAGTTGAAGACAGACCACATACCCAGAACTCTTTGAAGATGGAAGTTTTATTTCGATCTCATTTGAGTTTAGTATCAAGGGTAATCATTCTCCATTTCCTTCAACTTCTCTTTATTGACCCTTCTCTGCC--TTAGATGCCTATACAACAGCTGAAGTGGTTTATTCTTGGACTCTCGGAAAGAACAAATCCGTGGAAGTGGCACAGGATGGTTCTCGCTTGAACCAGTATGACCTTTTGGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGTA 
    20. 

  20. s fr1.chrUn 343707053 283 - 349519338 AACTTAAATCAACACCAAGTAAAGGCAAAGAATCTTTTAAACTAAGAA----TCTATTAAACTAGATAAACTAAAGCATCGACACTGACGCGTTGATCTGTCATCCACGTTTCCCCTGTTTCCTTTCCTTCTCCATCTAGACGCTTACACCAACAATGAGGTGATTTACCTGTGGACTCAGGGGGACGAGAGGTCTGTGTCTGTCGCAGAGGACGGCTCCAGGCTGAACCAGTATGATTTACTGGGACACGTTATTGGCAAAGAAACCATCAGCTCCAGCACAGGTA 
    21. 

  21. 

  22. a score=5912
    23. 

  23. s hg17.chrX   3760375 93 - 154824264 TTAGGTTAACAATTCATGCTGAGTGTCCCATGCATTTGGAAGATTTTCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGAAGCTGTATGT 
    24. 

  24. s fr1.chrUn 343706399 93 - 349519338 TCAGGTTGACCATCCACGCTGAGTGCCCCATGCACCTGGAGGACTTCCCCATGGACTCGCACGCCTGTCCTCTCAAGTTTGGAAGTTGTAAGT 
    25. 

  25. 

  26. a score=4332
    27. 

  27. s hg17.chrX   3733405 476 - 154824264 ATCAAGGAGAATTTGGGGAAACAGAGCATTAGGGAAGGAATAGATGGAAGAGAGGCATGCTTGTAATAAATTATAGGAAAGAGAAGAGTTTGAAAAAGAGATAAGAGTTCACACAATTGTGGAAAGAATGGAGTGGAGTATATGTAAACAGAAAAGAAGCTGTATGGAATGAGGTGGATGGAGGGACAGAATAATGAGGAGGAGAT---GTGGATGGGCAGAAGACAGTAAGCAAATGGAAGAGAAGCAAGA-----GGAAGGAGAGAGTAATGGGCAGGAAAGGATCTGAACCCAGTAGAGATTGCAAATAGTGAGGAGAAATAGAGAATGAATGAAAAGAACAGG--ATAGAGGAGAAACAACAATAAAAGGAATAAAGCATAGAGAATAGGTTTAAGTTTTGGAGGAGGGATAGAGAA-----GAGAGAAGAAAGGAGAGAGGATGGGAATATTGAAATACAAAAAAATAGAAGGTGCAGGTTGAGGA 
    28. 

  28. s fr1.chrUn 303515824 444 + 349519338 AACACGGAATATGGAGGGAAAACGGGGAATATGGAGGGAACAG--GGAATATGG-------------------TGGGAACACAGAGGGAATATGGAGGGAACACGGG-------GAATATGGAGGGAA---AACGGGGAATATGGAGGGAACGGGGAATATGGAGGGAACGAGGAATATGGAGGGAACGGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACAGGGAAT--ATGGAGGGAACGGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATAT--------------GGAGGGAACGAGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACGGGGTACTCAGTGAGAA 
    29. 

  29. 

  30. a score=719
    31. 

  31. s hg17.chrX   3731355 108 - 154824264 TATGTAAGTAGAATGCAGTCAAGAAACTTGTAGGTGGATAGGTAGAGGCAGAAGGAAGAGAGGAAGGACGTTCTAGACAGAGAAAACCAAGTGAGCAGTTGCAGGGAA 
    32. 

  32. s fr1.chrUn 303515724  91 + 349519338 TATGGAGGGAACACG------GGGAATATGGAGG-GAATATAGAGGGGAGACGGGGAATATGGAGGGA------ACACGGGGAATATGGAGGGAACA----CAGGGAA 
    33. 

  33. 

  34. a score=3647
    35. 

  35. s hg17.chrX   3730591 447 - 154824264 CAAGGAAAAAAGGATAATACTTCAGAGAGAAGTTGGATGAGAGATGGGAGGAA--AAATGAACATAGAGGAGAAATGAGCATAGAGTGGAGGATAAAATAATGAAGAAGGAAAGTGGATAGAAGTGGGAAGATGAGGGTCAAGAGGGGAGGAGAAGACTAATTACACAGAGTACATAGAGGCATGTATATTGGAGAAATGAGAATGGTGAAAAGAAAGAGAGTATGAGAAGAGAGGACAAAAAGAGTAGAGAAGTTGAGAAGACAAAGGATAAGATGGTGTAAAATAAAGAAGCTAGATTAGATATTAGGATATTCTAAAGAGATAGGCGAATATAATGAAGTGGATGTAGTAGATGGGAATAAAGAGGAAAAGACATAGAGAAGTAGGGGAAGGGACATGGGAGGAGATGAACAAGAGGGAGGGAAATTGTAGACGAAAGAAAGAGAA 
    36. 

  36. s fr1.chrUn 303515378 346 + 349519338 CACGGGGAATATGGCGGGAACACAGAGGGAATATGGAGGGAACACGGGGAATATGGAGGGAATATAGAGGGGAGACGGG--GAATATGGAGGG-AACATGGGGAATATGGAGGGAATATAGA---GGGGAGACGGGGAATATGGAGGGA--------------ACACGGGGAATATGGAGG---GAACACAGG------GAATATGGCGGGAACACAGGGAATATG----GAGGGAACACGGGGAATATGGAGG----GAACACAGGGAATATGGAGG----AAATATAGAGGGAAAACGGGAAAT------------------------------ATGGAGGGAATATGGT----GGGAACACAGGGAATA----------------TGGAGGGAACACGGGG----------AATATGGAGGGAA--TATAGAGGGGAGACGGGGAA 
    37. 

  37. 

  38. a score=13113
    39. 

  39. s hg17.chrX   3729219 238 - 154824264 CCCCTAGGAGTACACTATTGATGTATTTTTTCGGCAGACATGGCATGATGAAAGACTGAAATTTGATGGCCCCATGAAGATCCTTCCACTGAACAATCTCCTGGCTAGTAAGATCTGGACACCGGACACCTTCTTCCACAATGGCAAGAAATCAGTGGCTCATAACATGACCACGCCCAACAAGCTGCTCAGATTGGTGGACAACGGAACCCTCCTCTATACAATGAGGTCAGAGAGT 
    40. 

  40. s fr1.chrUn 343703525 238 - 349519338 CCCTCAGGAGTACACCATCGACGTCTTCTTCCGTCAGAGTTGGAGAGACGAGAGGCTAAAGTTTGATGGACCTATGCAGGTTTTACCCCTGAACAACCTCCTGGCCAGTAAGATTTGGACTCCTGACACCTTTTTCCACAACGGAAAGAAGTCTGTTGCCCACAACATGACGACTCCGAACAAACTGCTGCGCCTGGTCGACAACGGCACGCTTCTATATACAATGAGGTGAGGCGGT 
    41. 

  41. 

  42. a score=3528
    43. 

  43. s hg17.chrX   3700391 307 - 154824264 AGTAAGTTGGCTGTCATTCAGAGT-ACTGCACTG-GACTCT---CTCTGAGCTAAGACAAAAGCCTTTCCTGACATTCTGCTTTTCTACTTTCTTTCACGCAGATGCAGTGACTGAAGTGAAGACTGACATCTACGTGACCAGTTTTGGCCCTGTGTCAGACACTGACATGGTA---------AGTTCTTGCAAAGGTAAATGTA---AAAGAGGATGCACT----AGACCAAAGAAAATAAATTGGAGCTTTCCTAAGGC---AGGGCCTTGTAGCTATATTCTAAGGAGTGGTCTTTTCTCA--TATGAATTT--CCTACCCTCGCCACCCTA 
    44. 

  44. s fr1.chrUn 241017738 330 - 349519338 ATTCATTTGTATGTCCTTTTGTGTTACTAAGCTGTGTCTCTAATTCCAGAGCGAAAACAAAACTCATTAGATTTGTGTCATTTGTTCATTTGCTC---CATAGGTCCTGTAACTGAGGTCAAGACAGATATTTATGTGACAAGTTTTGGGCCTGTGTCAGATGTTGAAATGGTACGTACACCGAGTGTTATTGATGCTAAATTTACCTCAGGAGGGGACACTTTTAATACCTTATAGAACATTATAGAGATTCTGGGACGTGCAAGGGCAGTGCAGGAAAGGCC--AGGTGGGGTCAGGTCTTAGTTATGAAGCGGACATACTGTCGCAGCCCTA 
    45. 

  45. 

  46. a score=5471
    47. 

  47. s hg17.chrX   3639441 205 - 154824264 TCTTGAATTACGATATCTA-GTCATGT---ATTTTTTTTCCTATTAAGAACTATTATTTTTTTTCTTTTC---CTTGCATTGCCTCAGGCTGTCTC---CTAAGCATGCCCCAGATATTCCTGATGACAGCACTGACAACATCACTATCTTCACCAGAATCTTGGATCGTCTTCTGGACGGCTATGACAACCGGCTGCGACCTGGGCTTGGAGGT 
    48. 

  48. s fr1.chrUn 333536350 213 + 349519338 TCATTAATCACAAAGACCACGTCATGTTTGACGTCTTGTGGTTTTAAGAAGCGCAAGCCTTGTTCTTTTCACTCTCCCCTTCCTCTCGTCTCTTCCAGGCTCTGCTTGTCCCAGTCTGAGCCGCCTAC--CAACGACAACAGCACAGTTTTCACCAGGATCCTGGATGGGCTCCTTGACGGTTACGACAACAGGCTGCGACCTGGGCTTGGGGGT
    49.