/test-data/rgClustal_testout.fasta

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 48 lines · 48 code · 0 blank · 0 comment · 0 complexity · 7d05ceac2daeb991b15f82cf9a3b3200 MD5 · raw file 

    

  1. >c_briggsae-chrII_+_
    2. 

  2. ---ATGAGCTTCCACAAAAGCATGAGCTTT
    3. 

  3. CTCAGCTTCTGCCACATCAGCATTCAAATG
    4. 

  4. ATC
    5. 

  5. >c_brenneri-Cbre_Contig60_+_
    6. 

  6. ---ATGAGCCTCCACAACAGCATGATTTTT
    7. 

  7. CTCGGCTTCCGCCACATCCGCATTCAAATG
    8. 

  8. ATC
    9. 

  9. >c_remanei-Crem_Contig172_-_
    10. 

  10. ---ATGAGCCTCTACAACCGCATGATTCTT
    11. 

  11. TTCAGCCTCTGCCACGTCCGCATTCAAATG
    12. 

  12. CTC
    13. 

  13. >c_elegans-II_+_
    14. 

  14. ---ATGAGCCTCTACTACAGCATGATTCTT
    15. 

  15. CTCAGCTTCTGCAACGTCAGCATTCAGATG
    16. 

  16. ATC
    17. 

  17. >c_briggsae-chrII_+_bar
    18. 

  18. ---CCGGAGTCGATCCCTGAAT--------
    19. 

  19. ------------------------------
    20. 

  20. ---
    21. 

  21. >c_brenneri-Cbre_Contig60fee_+_
    22. 

  22. ---ACGAAGTCGATCCCTGAAA--------
    23. 

  23. -TCAGATGAGCGGTTGACCA---GAGAACA
    24. 

  24. ACC
    25. 

  25. >c_remanei-Crem_Contig172zot_-_
    26. 

  26. ---ACGAAGTCGGTCCCTATAAGGTATGAT
    27. 

  27. TTTATATGA----TGTACCATAAGGAAATA
    28. 

  28. GTC
    29. 

  29. >c_elegans-II_+_meh
    30. 

  30. ---ACGAAGTCGGTCCCTGAAC--AATTAT
    31. 

  31. TT----TGA----TATA---GAAAGAAACG
    32. 

  32. GTA
    33. 

  33. >c_briggsae-chrIfooI_+_
    34. 

  34. CGCACAAATATGATGCACAAATCCACAACC
    35. 

  35. TAAAGCATCTCCGATAACGTTGACCGAAGT
    36. 

  36. ---
    37. 

  37. >c_brenneri-Cbre_Contig60gak_+_
    38. 

  38. CGCACAAATGTAGTGGACAAATCCGCATCC
    39. 

  39. CAAAGCGTCTCCGATAACATTTACCGAAGT
    40. 

  40. ---
    41. 

  41. >c_remanei-Crem_Contig172foo_-_
    42. 

  42. AGCACAAATGTAATGAACGAATCCGCATCC
    43. 

  43. CAACGCATCGCCAATCACATTCACAGATGT
    44. 

  44. ---
    45. 

  45. >c_elegans-II_+_more
    46. 

  46. TGCACAAATGTGATGAACGAATCCACATCC
    47. 

  47. CAATGCATCACCGATCACATTGACAGATGT
    48. 

  48. ---
    49.