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/test-data/cf_maf_limit_to_species.dat

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 40 lines | 37 code | 3 blank | 0 comment | 0 complexity | 3e7e9d108519da9f96c0b4ebf0535f50 MD5 | raw file
 1##maf version=1
 2a score=85620.0
 3s hg17.chr7     127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt 
 4s panTro1.chr6  129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt 
 5i panTro1.chr6                            C 0 C 0                                                                                                        
 6s rheMac2.chr3  165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt 
 7i rheMac2.chr3                            C 0 C 0                                                                                                        
 8s canFam2.chr14  52847428 108 -  63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt 
 9i canFam2.chr14                           I 4750 I 198                                                                                                   
10s bosTau2.chr4   19312415 103 -  69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt 
11i bosTau2.chr4                            M 120077 I 1                                                                                                   
12s rn3.chr4       56182200  95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT 
13i rn3.chr4                                I 3727 C 0                                                                                                     
14
15a score=113319.0
16s hg17.chr7     127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta-------------------aaaa 
17s panTro1.chr6  129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta-------------------aaaa 
18i panTro1.chr6                            C 0 C 0                                                                                                                                                                                                                                       
19s rheMac2.chr3  165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataactgttaaatctaggtgttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatgaaaa 
20i rheMac2.chr3                            C 0 C 0                                                                                                                                                                                                                                       
21s rn3.chr4       56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAATATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG-GGAAGTGGTAATTGTTACATATGGGTAATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG-------------------AAAA 
22i rn3.chr4                                C 0 I 959                                                                                                                                                                                                                                     
23s bosTau2.chr4   19312519 138 -  69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaagaattaa-------------------------tgatgc--aaatatgcaaaaagagta--cgttaaacctaa------------------------------------------------atttgCGATTttcattta-------------------aaaa 
24i bosTau2.chr4                            I 1 I 19                                                                                                                                                                                                                                      
25s canFam2.chr14  52847734 160 -  63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-agtaaa-------------------------tgaagc--AAATATGGGAAGACAATAATCATTAAATCTAGGTGATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA-------------------AAAA 
26i canFam2.chr14                           I 198 I 225                                                                                                                                                                                                                                   
27
28a score=94204.0
29s hg17.chr7     127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG 
30s panTro1.chr6  129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG 
31i panTro1.chr6                            C 0 C 0                                                                                                                                                                                                                                                                   
32s rheMac2.chr3  165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G 
33i rheMac2.chr3                            C 0 C 0                                                                                                                                                                                                                                                                   
34s rn3.chr4       56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG 
35i rn3.chr4                                I 959 C 0                                                                                                                                                                                                                                                                 
36s bosTau2.chr4   19312715 168 -  69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG 
37i bosTau2.chr4                            C 0 I 12                                                                                                                                                                                                                                                                  
38s canFam2.chr14  52848158 168 -  63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA 
39i canFam2.chr14                           C 0 C 0                                                                                                                                                                                                                                                                   
40