/test-data/cf_maf_limit_to_species.dat
https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 40 lines · 37 code · 3 blank · 0 comment · 0 complexity · 3e7e9d108519da9f96c0b4ebf0535f50 MD5 · raw file
- ##maf version=1
- a score=85620.0
- s hg17.chr7 127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
- s panTro1.chr6 129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
- i panTro1.chr6 C 0 C 0
- s rheMac2.chr3 165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt
- i rheMac2.chr3 C 0 C 0
- s canFam2.chr14 52847428 108 - 63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt
- i canFam2.chr14 I 4750 I 198
- s bosTau2.chr4 19312415 103 - 69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt
- i bosTau2.chr4 M 120077 I 1
- s rn3.chr4 56182200 95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT
- i rn3.chr4 I 3727 C 0
- a score=113319.0
- s hg17.chr7 127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta-------------------aaaa
- s panTro1.chr6 129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta-------------------aaaa
- i panTro1.chr6 C 0 C 0
- s rheMac2.chr3 165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataactgttaaatctaggtgttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatgaaaa
- i rheMac2.chr3 C 0 C 0
- s rn3.chr4 56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAATATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG-GGAAGTGGTAATTGTTACATATGGGTAATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG-------------------AAAA
- i rn3.chr4 C 0 I 959
- s bosTau2.chr4 19312519 138 - 69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaagaattaa-------------------------tgatgc--aaatatgcaaaaagagta--cgttaaacctaa------------------------------------------------atttgCGATTttcattta-------------------aaaa
- i bosTau2.chr4 I 1 I 19
- s canFam2.chr14 52847734 160 - 63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-agtaaa-------------------------tgaagc--AAATATGGGAAGACAATAATCATTAAATCTAGGTGATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA-------------------AAAA
- i canFam2.chr14 I 198 I 225
- a score=94204.0
- s hg17.chr7 127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG
- s panTro1.chr6 129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG
- i panTro1.chr6 C 0 C 0
- s rheMac2.chr3 165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G
- i rheMac2.chr3 C 0 C 0
- s rn3.chr4 56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG
- i rn3.chr4 I 959 C 0
- s bosTau2.chr4 19312715 168 - 69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG
- i bosTau2.chr4 C 0 I 12
- s canFam2.chr14 52848158 168 - 63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA
- i canFam2.chr14 C 0 C 0