/test-data/rgClustal_testout.log

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 144 lines · 132 code · 12 blank · 0 comment · 0 complexity · 76b8eed8ba2269dd30aa272f096546f4 MD5 · raw file 

    

  1. CLUSTAL 2.1 Multiple Sequence Alignments
    2. 

  2. 

  3. 

  4. Sequence type explicitly set to DNA
    5. 

  5. Sequence format is Pearson
    6. 

  6. Sequence 1: c_briggsae-chrII_+_/43862-46313                 60 bp
    7. 

  7. Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941       60 bp
    8. 

  8. Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087       60 bp
    9. 

  9. Sequence 4: c_elegans-II_+_/9706834-9708803                 60 bp
    10. 

  10. Sequence 5: c_briggsae-chrIfooI_+_/43862-46313              60 bp
    11. 

  11. Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941    60 bp
    12. 

  12. Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087    60 bp
    13. 

  13. Sequence 8: c_elegans-II_+_more/9706834-9708803             60 bp
    14. 

  14. Sequence 9: c_briggsae-chrII_+_bar/43862-46313              60 bp
    15. 

  15. Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941    60 bp
    16. 

  16. Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087    60 bp
    17. 

  17. Sequence 12: c_elegans-II_+_meh/9706834-9708803              60 bp
    18. 

  18. Start of Pairwise alignments
    19. 

  19. Aligning...
    20. 

  20. 

  21. Sequences (1:2) Aligned. Score:  80
    22. 

  22. Sequences (1:3) Aligned. Score:  88
    23. 

  23. Sequences (1:4) Aligned. Score:  83
    24. 

  24. Sequences (1:5) Aligned. Score:  21
    25. 

  25. Sequences (1:6) Aligned. Score:  20
    26. 

  26. Sequences (1:7) Aligned. Score:  23
    27. 

  27. Sequences (1:8) Aligned. Score:  18
    28. 

  28. Sequences (1:9) Aligned. Score:  21
    29. 

  29. Sequences (1:10) Aligned. Score:  16
    30. 

  30. Sequences (1:11) Aligned. Score:  25
    31. 

  31. Sequences (1:12) Aligned. Score:  10
    32. 

  32. Sequences (2:3) Aligned. Score:  85
    33. 

  33. Sequences (2:4) Aligned. Score:  86
    34. 

  34. Sequences (2:5) Aligned. Score:  21
    35. 

  35. Sequences (2:6) Aligned. Score:  20
    36. 

  36. Sequences (2:7) Aligned. Score:  25
    37. 

  37. Sequences (2:8) Aligned. Score:  20
    38. 

  38. Sequences (2:9) Aligned. Score:  36
    39. 

  39. Sequences (2:10) Aligned. Score:  16
    40. 

  40. Sequences (2:11) Aligned. Score:  22
    41. 

  41. Sequences (2:12) Aligned. Score:  17
    42. 

  42. Sequences (3:4) Aligned. Score:  85
    43. 

  43. Sequences (3:5) Aligned. Score:  13
    44. 

  44. Sequences (3:6) Aligned. Score:  20
    45. 

  45. Sequences (3:7) Aligned. Score:  25
    46. 

  46. Sequences (3:8) Aligned. Score:  20
    47. 

  47. Sequences (3:9) Aligned. Score:  36
    48. 

  48. Sequences (3:10) Aligned. Score:  16
    49. 

  49. Sequences (3:11) Aligned. Score:  18
    50. 

  50. Sequences (3:12) Aligned. Score:  25
    51. 

  51. Sequences (4:5) Aligned. Score:  13
    52. 

  52. Sequences (4:6) Aligned. Score:  11
    53. 

  53. Sequences (4:7) Aligned. Score:  20
    54. 

  54. Sequences (4:8) Aligned. Score:  10
    55. 

  55. Sequences (4:9) Aligned. Score:  31
    56. 

  56. Sequences (4:10) Aligned. Score:  17
    57. 

  57. Sequences (4:11) Aligned. Score:  29
    58. 

  58. Sequences (4:12) Aligned. Score:  14
    59. 

  59. Sequences (5:6) Aligned. Score:  73
    60. 

  60. Sequences (5:7) Aligned. Score:  83
    61. 

  61. Sequences (5:8) Aligned. Score:  80
    62. 

  62. Sequences (5:9) Aligned. Score:  31
    63. 

  63. Sequences (5:10) Aligned. Score:  14
    64. 

  64. Sequences (5:11) Aligned. Score:  14
    65. 

  65. Sequences (5:12) Aligned. Score:  12
    66. 

  66. Sequences (6:7) Aligned. Score:  80
    67. 

  67. Sequences (6:8) Aligned. Score:  88
    68. 

  68. Sequences (6:9) Aligned. Score:  26
    69. 

  69. Sequences (6:10) Aligned. Score:  16
    70. 

  70. Sequences (6:11) Aligned. Score:  25
    71. 

  71. Sequences (6:12) Aligned. Score:  12
    72. 

  72. Sequences (7:8) Aligned. Score:  78
    73. 

  73. Sequences (7:9) Aligned. Score:  31
    74. 

  74. Sequences (7:10) Aligned. Score:  10
    75. 

  75. Sequences (7:11) Aligned. Score:  12
    76. 

  76. Sequences (7:12) Aligned. Score:  12
    77. 

  77. Sequences (8:9) Aligned. Score:  31
    78. 

  78. Sequences (8:10) Aligned. Score:  10
    79. 

  79. Sequences (8:11) Aligned. Score:  14
    80. 

  80. Sequences (8:12) Aligned. Score:  12
    81. 

  81. Sequences (9:10) Aligned. Score:  63
    82. 

  82. Sequences (9:11) Aligned. Score:  84
    83. 

  83. Sequences (9:12) Aligned. Score:  78
    84. 

  84. Sequences (10:11) Aligned. Score:  64
    85. 

  85. Sequences (10:12) Aligned. Score:  76
    86. 

  86. Sequences (11:12) Aligned. Score:  46
    87. 

  87. Guide tree file created:   [infile_copy.dnd]
    88. 

  88. 

  89. There are 11 groups
    90. 

  90. Start of Multiple Alignment
    91. 

  91. 

  92. Aligning...
    93. 

  93. Group 1: Sequences:   2      Score:1045
    94. 

  94. Group 2: Sequences:   2      Score:1016
    95. 

  95. Group 3: Sequences:   4      Score:1001
    96. 

  96. Group 4: Sequences:   2      Score:313
    97. 

  97. Group 5: Sequences:   2      Score:731
    98. 

  98. Group 6: Sequences:   4      Score:516
    99. 

  99. Group 7: Sequences:   8      Score:344
    100. 

  100. Group 8: Sequences:   2      Score:1016
    101. 

  101. Group 9: Sequences:   2      Score:1054
    102. 

  102. Group 10: Sequences:   4      Score:945
    103. 

  103. Group 11: Sequences:  12      Score:380
    104. 

  104. Alignment Score 6283
    105. 

  105. 

  106. CLUSTAL-Alignment file created  [/share/shared/galaxy/database/files/002/dataset_2801.dat]
    107. 

  107. 

  108. 

  109. Clustal created the following dnd file for your information:
    110. 

  110. (
    111. 

  111. (
    112. 

  112. c_briggsae-chrII_+_/43862-46313:0.07349,
    113. 

  113. c_brenneri-Cbre_Contig60_+_/627772-630087:0.04317)
    114. 

  114. :0.02387,
    115. 

  115. (
    116. 

  116. c_remanei-Crem_Contig172_-_/123228-124941:0.06114,
    117. 

  117. c_elegans-II_+_/9706834-9708803:0.07219)
    118. 

  118. :0.01779,
    119. 

  119. (
    120. 

  120. (
    121. 

  121. (
    122. 

  122. c_briggsae-chrIfooI_+_/43862-46313:0.10368,
    123. 

  123. c_brenneri-Cbre_Contig60gak_+_/627772-630087:0.06298)
    124. 

  124. :0.01654,
    125. 

  125. (
    126. 

  126. c_remanei-Crem_Contig172foo_-_/123228-124941:0.05765,
    127. 

  127. c_elegans-II_+_more/9706834-9708803:0.05902)
    128. 

  128. :0.06262)
    129. 

  129. :0.31533,
    130. 

  130. (
    131. 

  131. (
    132. 

  132. c_briggsae-chrII_+_bar/43862-46313:0.02327,
    133. 

  133. c_brenneri-Cbre_Contig60fee_+_/627772-630087:0.13463)
    134. 

  134. :0.05016,
    135. 

  135. (
    136. 

  136. c_remanei-Crem_Contig172zot_-_/123228-124941:0.11667,
    137. 

  137. c_elegans-II_+_meh/9706834-9708803:0.11737)
    138. 

  138. :0.12013)
    139. 

  139. :0.20951)
    140. 

  140. :0.30133);
    141.