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/test-data/rgClustal_testout.log

https://bitbucket.org/cistrome/cistrome-harvard/
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  4 CLUSTAL 2.1 Multiple Sequence Alignments
  5
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  7Sequence type explicitly set to DNA
  8Sequence format is Pearson
  9Sequence 1: c_briggsae-chrII_+_/43862-46313                 60 bp
 10Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941       60 bp
 11Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087       60 bp
 12Sequence 4: c_elegans-II_+_/9706834-9708803                 60 bp
 13Sequence 5: c_briggsae-chrIfooI_+_/43862-46313              60 bp
 14Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941    60 bp
 15Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087    60 bp
 16Sequence 8: c_elegans-II_+_more/9706834-9708803             60 bp
 17Sequence 9: c_briggsae-chrII_+_bar/43862-46313              60 bp
 18Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941    60 bp
 19Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087    60 bp
 20Sequence 12: c_elegans-II_+_meh/9706834-9708803              60 bp
 21Start of Pairwise alignments
 22Aligning...
 23
 24Sequences (1:2) Aligned. Score:  80
 25Sequences (1:3) Aligned. Score:  88
 26Sequences (1:4) Aligned. Score:  83
 27Sequences (1:5) Aligned. Score:  21
 28Sequences (1:6) Aligned. Score:  20
 29Sequences (1:7) Aligned. Score:  23
 30Sequences (1:8) Aligned. Score:  18
 31Sequences (1:9) Aligned. Score:  21
 32Sequences (1:10) Aligned. Score:  16
 33Sequences (1:11) Aligned. Score:  25
 34Sequences (1:12) Aligned. Score:  10
 35Sequences (2:3) Aligned. Score:  85
 36Sequences (2:4) Aligned. Score:  86
 37Sequences (2:5) Aligned. Score:  21
 38Sequences (2:6) Aligned. Score:  20
 39Sequences (2:7) Aligned. Score:  25
 40Sequences (2:8) Aligned. Score:  20
 41Sequences (2:9) Aligned. Score:  36
 42Sequences (2:10) Aligned. Score:  16
 43Sequences (2:11) Aligned. Score:  22
 44Sequences (2:12) Aligned. Score:  17
 45Sequences (3:4) Aligned. Score:  85
 46Sequences (3:5) Aligned. Score:  13
 47Sequences (3:6) Aligned. Score:  20
 48Sequences (3:7) Aligned. Score:  25
 49Sequences (3:8) Aligned. Score:  20
 50Sequences (3:9) Aligned. Score:  36
 51Sequences (3:10) Aligned. Score:  16
 52Sequences (3:11) Aligned. Score:  18
 53Sequences (3:12) Aligned. Score:  25
 54Sequences (4:5) Aligned. Score:  13
 55Sequences (4:6) Aligned. Score:  11
 56Sequences (4:7) Aligned. Score:  20
 57Sequences (4:8) Aligned. Score:  10
 58Sequences (4:9) Aligned. Score:  31
 59Sequences (4:10) Aligned. Score:  17
 60Sequences (4:11) Aligned. Score:  29
 61Sequences (4:12) Aligned. Score:  14
 62Sequences (5:6) Aligned. Score:  73
 63Sequences (5:7) Aligned. Score:  83
 64Sequences (5:8) Aligned. Score:  80
 65Sequences (5:9) Aligned. Score:  31
 66Sequences (5:10) Aligned. Score:  14
 67Sequences (5:11) Aligned. Score:  14
 68Sequences (5:12) Aligned. Score:  12
 69Sequences (6:7) Aligned. Score:  80
 70Sequences (6:8) Aligned. Score:  88
 71Sequences (6:9) Aligned. Score:  26
 72Sequences (6:10) Aligned. Score:  16
 73Sequences (6:11) Aligned. Score:  25
 74Sequences (6:12) Aligned. Score:  12
 75Sequences (7:8) Aligned. Score:  78
 76Sequences (7:9) Aligned. Score:  31
 77Sequences (7:10) Aligned. Score:  10
 78Sequences (7:11) Aligned. Score:  12
 79Sequences (7:12) Aligned. Score:  12
 80Sequences (8:9) Aligned. Score:  31
 81Sequences (8:10) Aligned. Score:  10
 82Sequences (8:11) Aligned. Score:  14
 83Sequences (8:12) Aligned. Score:  12
 84Sequences (9:10) Aligned. Score:  63
 85Sequences (9:11) Aligned. Score:  84
 86Sequences (9:12) Aligned. Score:  78
 87Sequences (10:11) Aligned. Score:  64
 88Sequences (10:12) Aligned. Score:  76
 89Sequences (11:12) Aligned. Score:  46
 90Guide tree file created:   [infile_copy.dnd]
 91
 92There are 11 groups
 93Start of Multiple Alignment
 94
 95Aligning...
 96Group 1: Sequences:   2      Score:1045
 97Group 2: Sequences:   2      Score:1016
 98Group 3: Sequences:   4      Score:1001
 99Group 4: Sequences:   2      Score:313
100Group 5: Sequences:   2      Score:731
101Group 6: Sequences:   4      Score:516
102Group 7: Sequences:   8      Score:344
103Group 8: Sequences:   2      Score:1016
104Group 9: Sequences:   2      Score:1054
105Group 10: Sequences:   4      Score:945
106Group 11: Sequences:  12      Score:380
107Alignment Score 6283
108
109CLUSTAL-Alignment file created  [/share/shared/galaxy/database/files/002/dataset_2801.dat]
110
111
112Clustal created the following dnd file for your information:
113(
114(
115c_briggsae-chrII_+_/43862-46313:0.07349,
116c_brenneri-Cbre_Contig60_+_/627772-630087:0.04317)
117:0.02387,
118(
119c_remanei-Crem_Contig172_-_/123228-124941:0.06114,
120c_elegans-II_+_/9706834-9708803:0.07219)
121:0.01779,
122(
123(
124(
125c_briggsae-chrIfooI_+_/43862-46313:0.10368,
126c_brenneri-Cbre_Contig60gak_+_/627772-630087:0.06298)
127:0.01654,
128(
129c_remanei-Crem_Contig172foo_-_/123228-124941:0.05765,
130c_elegans-II_+_more/9706834-9708803:0.05902)
131:0.06262)
132:0.31533,
133(
134(
135c_briggsae-chrII_+_bar/43862-46313:0.02327,
136c_brenneri-Cbre_Contig60fee_+_/627772-630087:0.13463)
137:0.05016,
138(
139c_remanei-Crem_Contig172zot_-_/123228-124941:0.11667,
140c_elegans-II_+_meh/9706834-9708803:0.11737)
141:0.12013)
142:0.20951)
143:0.30133);
144