/test-data/rgClustal_testout.log
Unknown | 144 lines | 132 code | 12 blank | 0 comment | 0 complexity | 76b8eed8ba2269dd30aa272f096546f4 MD5 | raw file
1 2 3 4 CLUSTAL 2.1 Multiple Sequence Alignments 5 6 7Sequence type explicitly set to DNA 8Sequence format is Pearson 9Sequence 1: c_briggsae-chrII_+_/43862-46313 60 bp 10Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941 60 bp 11Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087 60 bp 12Sequence 4: c_elegans-II_+_/9706834-9708803 60 bp 13Sequence 5: c_briggsae-chrIfooI_+_/43862-46313 60 bp 14Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941 60 bp 15Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087 60 bp 16Sequence 8: c_elegans-II_+_more/9706834-9708803 60 bp 17Sequence 9: c_briggsae-chrII_+_bar/43862-46313 60 bp 18Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941 60 bp 19Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087 60 bp 20Sequence 12: c_elegans-II_+_meh/9706834-9708803 60 bp 21Start of Pairwise alignments 22Aligning... 23 24Sequences (1:2) Aligned. Score: 80 25Sequences (1:3) Aligned. Score: 88 26Sequences (1:4) Aligned. Score: 83 27Sequences (1:5) Aligned. Score: 21 28Sequences (1:6) Aligned. Score: 20 29Sequences (1:7) Aligned. Score: 23 30Sequences (1:8) Aligned. Score: 18 31Sequences (1:9) Aligned. Score: 21 32Sequences (1:10) Aligned. Score: 16 33Sequences (1:11) Aligned. Score: 25 34Sequences (1:12) Aligned. Score: 10 35Sequences (2:3) Aligned. Score: 85 36Sequences (2:4) Aligned. Score: 86 37Sequences (2:5) Aligned. Score: 21 38Sequences (2:6) Aligned. Score: 20 39Sequences (2:7) Aligned. Score: 25 40Sequences (2:8) Aligned. Score: 20 41Sequences (2:9) Aligned. Score: 36 42Sequences (2:10) Aligned. Score: 16 43Sequences (2:11) Aligned. Score: 22 44Sequences (2:12) Aligned. Score: 17 45Sequences (3:4) Aligned. Score: 85 46Sequences (3:5) Aligned. Score: 13 47Sequences (3:6) Aligned. Score: 20 48Sequences (3:7) Aligned. Score: 25 49Sequences (3:8) Aligned. Score: 20 50Sequences (3:9) Aligned. Score: 36 51Sequences (3:10) Aligned. Score: 16 52Sequences (3:11) Aligned. Score: 18 53Sequences (3:12) Aligned. Score: 25 54Sequences (4:5) Aligned. Score: 13 55Sequences (4:6) Aligned. Score: 11 56Sequences (4:7) Aligned. Score: 20 57Sequences (4:8) Aligned. Score: 10 58Sequences (4:9) Aligned. Score: 31 59Sequences (4:10) Aligned. Score: 17 60Sequences (4:11) Aligned. Score: 29 61Sequences (4:12) Aligned. Score: 14 62Sequences (5:6) Aligned. Score: 73 63Sequences (5:7) Aligned. Score: 83 64Sequences (5:8) Aligned. Score: 80 65Sequences (5:9) Aligned. Score: 31 66Sequences (5:10) Aligned. Score: 14 67Sequences (5:11) Aligned. Score: 14 68Sequences (5:12) Aligned. Score: 12 69Sequences (6:7) Aligned. Score: 80 70Sequences (6:8) Aligned. Score: 88 71Sequences (6:9) Aligned. Score: 26 72Sequences (6:10) Aligned. Score: 16 73Sequences (6:11) Aligned. Score: 25 74Sequences (6:12) Aligned. Score: 12 75Sequences (7:8) Aligned. Score: 78 76Sequences (7:9) Aligned. Score: 31 77Sequences (7:10) Aligned. Score: 10 78Sequences (7:11) Aligned. Score: 12 79Sequences (7:12) Aligned. Score: 12 80Sequences (8:9) Aligned. Score: 31 81Sequences (8:10) Aligned. Score: 10 82Sequences (8:11) Aligned. Score: 14 83Sequences (8:12) Aligned. Score: 12 84Sequences (9:10) Aligned. Score: 63 85Sequences (9:11) Aligned. Score: 84 86Sequences (9:12) Aligned. Score: 78 87Sequences (10:11) Aligned. Score: 64 88Sequences (10:12) Aligned. Score: 76 89Sequences (11:12) Aligned. Score: 46 90Guide tree file created: [infile_copy.dnd] 91 92There are 11 groups 93Start of Multiple Alignment 94 95Aligning... 96Group 1: Sequences: 2 Score:1045 97Group 2: Sequences: 2 Score:1016 98Group 3: Sequences: 4 Score:1001 99Group 4: Sequences: 2 Score:313 100Group 5: Sequences: 2 Score:731 101Group 6: Sequences: 4 Score:516 102Group 7: Sequences: 8 Score:344 103Group 8: Sequences: 2 Score:1016 104Group 9: Sequences: 2 Score:1054 105Group 10: Sequences: 4 Score:945 106Group 11: Sequences: 12 Score:380 107Alignment Score 6283 108 109CLUSTAL-Alignment file created [/share/shared/galaxy/database/files/002/dataset_2801.dat] 110 111 112Clustal created the following dnd file for your information: 113( 114( 115c_briggsae-chrII_+_/43862-46313:0.07349, 116c_brenneri-Cbre_Contig60_+_/627772-630087:0.04317) 117:0.02387, 118( 119c_remanei-Crem_Contig172_-_/123228-124941:0.06114, 120c_elegans-II_+_/9706834-9708803:0.07219) 121:0.01779, 122( 123( 124( 125c_briggsae-chrIfooI_+_/43862-46313:0.10368, 126c_brenneri-Cbre_Contig60gak_+_/627772-630087:0.06298) 127:0.01654, 128( 129c_remanei-Crem_Contig172foo_-_/123228-124941:0.05765, 130c_elegans-II_+_more/9706834-9708803:0.05902) 131:0.06262) 132:0.31533, 133( 134( 135c_briggsae-chrII_+_bar/43862-46313:0.02327, 136c_brenneri-Cbre_Contig60fee_+_/627772-630087:0.13463) 137:0.05016, 138( 139c_remanei-Crem_Contig172zot_-_/123228-124941:0.11667, 140c_elegans-II_+_meh/9706834-9708803:0.11737) 141:0.12013) 142:0.20951) 143:0.30133); 144