PageRenderTime 14ms CodeModel.GetById 12ms app.highlight 0ms RepoModel.GetById 2ms app.codeStats 0ms

/test-data/sift_variants_result.tab

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 21 lines | 21 code | 0 blank | 0 comment | 0 complexity | d6f4ef9bd2091fd670e931fc723fe052 MD5 | raw file
 1#Chrom	Position	Strand	Allele	Codons	Transcript ID	Protein ID	Substitution	Region	dbSNP ID	SNP Type	Prediction	Score	Median Info	Num seqs at position	Gene ID	User Comment
 2chr3	81780820	+	T/C	AGA-gGA	ENST00000264326	ENSP00000264326	R190G	EXON CDS	rs2229519:C	Nonsynonymous	DAMAGING	0.04	3.06	149	ENSG00000114480	
 3chr2	230341630	+	G/T	-	ENST00000389045	ENSP00000373697	NA	EXON CDS	rs1803846:A	Unknown	Not scored	NA	NA	NA	ENSG00000153827	
 4chr2	43881517	+	A/T	ATA-tTA	ENST00000260605	ENSP00000260605	I230L	EXON CDS	rs11556157:T	Nonsynonymous	TOLERATED	0.47	3.19	7	ENSG00000138036	
 5chr2	43857514	+	T/C	TTT-TcT	ENST00000260605	ENSP00000260605	F33S	EXON CDS	rs2288709:C	Nonsynonymous	TOLERATED	0.61	3.33	6	ENSG00000138036	
 6chr6	88375602	+	G/A	GTT-aTT	ENST00000257789	ENSP00000257789	V217I	EXON CDS	rs2307389:A	Nonsynonymous	TOLERATED	0.75	3.17	13	ENSG00000135336	
 7chr22	29307353	+	T/A	ACC-tCC	ENST00000335214	ENSP00000334612	T264S	EXON CDS	rs42942:A	Nonsynonymous	TOLERATED	0.4	3.14	23	ENSG00000100029	
 8chr10	115912482	+	C/A	CGA-CtA	ENST00000369285	ENSP00000358291	R179L	EXON CDS	rs12782946:T	Nonsynonymous	TOLERATED	0.06	4.32	2	ENSG00000165813	
 9chr10	115900918	+	G/A	CAA-tAA	ENST00000369287	ENSP00000358293	Q271*	EXON CDS	rs7095762:T	Nonsynonymous	N/A	N/A	N/A	N/A	ENSG00000165813	
10chr16	69875502	+	G/T	ACA-AaA	ENST00000338099	ENSP00000337512	T608K	EXON CDS	rs3096381:T	Nonsynonymous	TOLERATED	0.12	3.41	3	ENSG00000180917	
11chr16	69876078	+	T/C	AAT-AgT	ENST00000338099	ENSP00000337512	N416S	EXON CDS	rs3803704:C	Nonsynonymous	TOLERATED	1	3.15	26	ENSG00000180917	
12chr16	69877147	+	G/A	CTT-tTT	ENST00000338099	ENSP00000337512	L60F	EXON CDS	rs3096380:A	Nonsynonymous	TOLERATED	0.31	3.33	31	ENSG00000180917	
13chr22	49000825	+	T/A	AGT-tGT	ENST00000248846	ENSP00000248846	S1364C	EXON CDS	rs5771107:A	Nonsynonymous	TOLERATED	0.18	3.38	6	ENSG00000128159	
14chr22	49000551	+	T/G	ACT-cCT	ENST00000248846	ENSP00000248846	T1377P	EXON CDS	rs11703226:C	Nonsynonymous	TOLERATED	0.27	3.38	6	ENSG00000128159	
15chr22	49006739	+	A/C	TTG-TgG	ENST00000248846	ENSP00000248846	L567W	EXON CDS	rs4838865:G	Nonsynonymous	TOLERATED	0.16	3.15	10	ENSG00000128159	
16chr11	17476318	+	C/G	GAG-GAc	ENST00000005226	ENSP00000005226	E819D	EXON CDS	rs1064074:G	Nonsynonymous	TOLERATED	0.08	3.95	12	ENSG00000006611	
17chr4	124033758	+	C/A	CGG-CtG	ENST00000339154	ENSP00000344011	R40L	EXON CDS	rs1048201:T	Nonsynonymous	DAMAGING	0.01	3.14	20	ENSG00000170917	
18chr3	185041096	+	C/G	GTG-cTG	ENST00000311101	ENSP00000310676	V212L	EXON CDS	rs3732581:G	Nonsynonymous	TOLERATED	0.58	2.94	30	ENSG00000175193	
19chr17	8101874	+	C/T	CCA-CtA	ENST00000314666	ENSP00000313490	P367L	EXON CDS	rs4791641:T	Nonsynonymous	TOLERATED	0.11	3.02	34	ENSG00000178921	
20chr6	33156520	+	C/T	GCG-GtG	ENST00000308461	ENSP00000311794	A65V	EXON CDS	rs1042121:T	Nonsynonymous	TOLERATED	1	3.39	397	ENSG00000168383	
21chr16	23556917	+	T/C	TAC-TgC	ENST00000261584	ENSP00000261584	Y28C	EXON CDS	novel	Nonsynonymous	DAMAGING *Warning! Low confidence.	0	4.32	1	ENSG00000083093