/test-data/fastqc_data.txt
https://bitbucket.org/cistrome/cistrome-harvard/ · Plain Text · 558 lines · 558 code · 0 blank · 0 comment · 0 complexity · f1e0418e1bdffc4da92c6f06f4424d60 MD5 · raw file
- ##FastQC 0.9.1
- >>Basic Statistics pass
- #Measure Value
- Filename 1000gsample.fastq
- File type Conventional base calls
- Encoding Sanger / Illumina 1.9
- Total Sequences 5000
- Sequence length 54
- %GC 43
- >>END_MODULE
- >>Per base sequence quality warn
- #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile
- 1 28.9946 31.0 27.0 33.0 22.0 34.0
- 2 28.486 30.0 26.0 32.0 21.0 33.0
- 3 28.5272 30.0 26.0 32.0 21.0 34.0
- 4 28.6252 30.0 26.0 32.0 22.0 33.0
- 5 28.4804 30.0 26.0 32.0 21.0 33.0
- 6 28.5128 30.0 26.0 32.0 22.0 33.0
- 7 28.4102 30.0 26.0 32.0 21.0 33.0
- 8 28.4674 30.0 26.0 32.0 22.0 33.0
- 9 28.182 30.0 26.0 32.0 21.0 33.0
- 10 28.0908 30.0 26.0 32.0 21.0 33.0
- 11 28.1876 30.0 26.0 32.0 21.0 33.0
- 12 28.1742 30.0 26.0 32.0 21.0 33.0
- 13 27.923 30.0 25.0 32.0 20.0 33.0
- 14 27.8984 29.0 25.0 32.0 21.0 33.0
- 15 27.6112 29.0 25.0 32.0 20.0 33.0
- 16 27.6638 29.0 25.0 32.0 20.0 33.0
- 17 27.5734 29.0 25.0 32.0 20.0 33.0
- 18 27.6348 29.0 25.0 32.0 20.0 33.0
- 19 27.6526 29.0 25.0 32.0 20.0 33.0
- 20 27.2716 29.0 24.0 32.0 19.0 33.0
- 21 27.2642 29.0 25.0 31.0 19.0 33.0
- 22 26.881 28.0 24.0 31.0 19.0 33.0
- 23 26.8124 28.0 24.0 31.0 19.0 33.0
- 24 26.8204 28.0 24.0 31.0 19.0 33.0
- 25 26.6606 28.0 24.0 31.0 18.0 33.0
- 26 26.3806 28.0 23.0 31.0 18.0 33.0
- 27 25.947 28.0 23.0 31.0 17.0 33.0
- 28 25.7446 27.0 22.0 31.0 16.0 33.0
- 29 25.6856 27.0 22.0 31.0 16.0 33.0
- 30 25.5228 27.0 22.0 31.0 16.0 33.0
- 31 25.354 27.0 22.0 30.0 16.0 32.0
- 32 25.1656 27.0 22.0 30.0 16.0 32.0
- 33 25.0164 26.0 21.0 30.0 15.0 32.0
- 34 24.75 26.0 21.0 30.0 15.0 32.0
- 35 24.3926 26.0 21.0 30.0 15.0 32.0
- 36 24.1122 25.0 20.0 30.0 14.0 32.0
- 37 23.8612 25.0 20.0 29.0 13.0 32.0
- 38 23.7544 25.0 20.0 29.0 13.0 32.0
- 39 23.485 25.0 19.0 29.0 13.0 32.0
- 40 23.1984 24.0 19.0 29.0 13.0 32.0
- 41 23.0976 24.0 19.0 29.0 13.0 32.0
- 42 22.9212 24.0 19.0 28.0 13.0 31.0
- 43 22.5172 24.0 18.0 28.0 12.0 31.0
- 44 22.3234 23.0 18.0 28.0 12.0 31.0
- 45 22.1372 23.0 18.0 28.0 11.0 31.0
- 46 22.2166 23.0 18.0 28.0 11.0 31.0
- 47 22.075 23.0 18.0 28.0 11.0 31.0
- 48 21.4592 22.0 17.0 27.0 11.0 31.0
- 49 21.0954 22.0 16.0 27.0 10.0 30.0
- 50 20.9356 22.0 16.0 27.0 10.0 30.0
- 51 20.6152 21.0 15.0 27.0 9.0 30.0
- 52 20.6588 21.0 16.0 27.0 9.0 30.0
- 53 19.5852 20.0 14.0 25.0 9.0 29.0
- 54 19.9424 21.0 14.0 26.0 7.0 30.0
- >>END_MODULE
- >>Per sequence quality scores warn
- #Quality Count
- 8 4.0
- 9 4.0
- 10 2.0
- 11 2.0
- 12 4.0
- 13 6.0
- 14 4.0
- 15 11.0
- 16 20.0
- 17 50.0
- 18 98.0
- 19 149.0
- 20 210.0
- 21 275.0
- 22 367.0
- 23 425.0
- 24 518.0
- 25 540.0
- 26 539.0
- 27 532.0
- 28 468.0
- 29 360.0
- 30 234.0
- 31 122.0
- 32 51.0
- 33 5.0
- >>END_MODULE
- >>Per base sequence content pass
- #Base G A T C
- 1 1075 1632 1296 997
- 2 1202 1586 1327 885
- 3 1079 1443 1471 1007
- 4 1079 1414 1445 1062
- 5 1058 1486 1416 1040
- 6 1119 1462 1286 1133
- 7 1067 1516 1412 1005
- 8 1079 1453 1397 1071
- 9 1015 1424 1429 1132
- 10 1060 1542 1328 1070
- 11 1057 1432 1364 1147
- 12 1066 1444 1450 1040
- 13 1018 1461 1447 1074
- 14 1001 1460 1461 1078
- 15 1010 1461 1419 1110
- 16 1017 1469 1465 1049
- 17 1030 1457 1425 1088
- 18 1030 1396 1470 1104
- 19 1083 1423 1429 1065
- 20 1000 1462 1448 1090
- 21 1086 1425 1409 1080
- 22 1026 1544 1365 1065
- 23 1036 1445 1486 1033
- 24 1056 1431 1379 1134
- 25 1055 1453 1458 1034
- 26 1109 1419 1406 1064
- 27 1067 1426 1438 1068
- 28 967 1527 1373 1133
- 29 1045 1456 1452 1046
- 30 1055 1470 1372 1103
- 31 1042 1402 1433 1123
- 32 992 1418 1437 1151
- 33 1104 1431 1363 1101
- 34 1065 1464 1363 1107
- 35 1054 1471 1411 1063
- 36 1070 1433 1440 1056
- 37 1044 1471 1426 1057
- 38 1093 1451 1403 1052
- 39 1096 1412 1352 1138
- 40 1066 1425 1391 1118
- 41 1083 1405 1380 1129
- 42 1114 1401 1385 1097
- 43 1062 1421 1391 1125
- 44 1070 1449 1377 1103
- 45 1093 1464 1337 1106
- 46 1063 1377 1387 1173
- 47 1081 1413 1402 1102
- 48 1064 1422 1320 1194
- 49 1052 1452 1359 1136
- 50 1091 1407 1340 1160
- 51 1051 1386 1400 1161
- 52 1091 1507 1297 1104
- 53 1058 1416 1402 1123
- 54 1072 1345 1339 1221
- >>END_MODULE
- >>Per base GC content pass
- #Base %GC
- 1 41.44
- 2 41.74
- 3 41.72
- 4 42.82
- 5 41.959999999999994
- 6 45.04
- 7 41.44
- 8 43.0
- 9 42.94
- 10 42.6
- 11 44.080000000000005
- 12 42.120000000000005
- 13 41.839999999999996
- 14 41.58
- 15 42.4
- 16 41.32
- 17 42.36
- 18 42.68
- 19 42.96
- 20 41.8
- 21 43.32
- 22 41.82
- 23 41.38
- 24 43.8
- 25 41.78
- 26 43.47739095638256
- 27 42.70854170834167
- 28 42.0
- 29 41.82836567313463
- 30 43.16
- 31 43.3
- 32 42.87715086034414
- 33 44.10882176435287
- 34 43.44868973794759
- 35 42.34846969393879
- 36 42.528505701140226
- 37 42.03681472589035
- 38 42.90858171634327
- 39 44.697879151660665
- 40 43.68
- 41 44.266559935961574
- 42 44.24654792875725
- 43 43.74874974994999
- 44 43.468693738747746
- 45 43.980000000000004
- 46 44.72
- 47 43.677470988395356
- 48 45.16
- 49 43.76875375075015
- 50 45.038015206082434
- 51 44.25770308123249
- 52 43.908781756351274
- 53 43.628725745149026
- 54 46.071930882057465
- >>END_MODULE
- >>Per sequence GC content warn
- #GC Content Count
- 0 3.0
- 1 5.0
- 2 7.0
- 3 7.0
- 4 7.0
- 5 5.0
- 6 2.0
- 7 1.0
- 8 1.5
- 9 2.0
- 10 1.5
- 11 1.0
- 12 2.5
- 13 4.0
- 14 4.0
- 15 4.0
- 16 5.0
- 17 6.0
- 18 11.0
- 19 19.5
- 20 23.0
- 21 37.5
- 22 52.0
- 23 61.0
- 24 70.0
- 25 79.0
- 26 88.0
- 27 117.5
- 28 147.0
- 29 159.5
- 30 172.0
- 31 203.0
- 32 243.0
- 33 252.0
- 34 290.0
- 35 328.0
- 36 330.0
- 37 332.0
- 38 332.5
- 39 333.0
- 40 342.0
- 41 351.0
- 42 343.5
- 43 336.0
- 44 318.5
- 45 279.5
- 46 258.0
- 47 254.5
- 48 251.0
- 49 234.5
- 50 218.0
- 51 209.5
- 52 201.0
- 53 198.5
- 54 196.0
- 55 177.0
- 56 162.5
- 57 167.0
- 58 147.0
- 59 127.0
- 60 106.5
- 61 86.0
- 62 85.0
- 63 84.0
- 64 61.5
- 65 39.0
- 66 42.5
- 67 46.0
- 68 34.0
- 69 17.0
- 70 12.0
- 71 14.0
- 72 16.0
- 73 12.5
- 74 9.0
- 75 6.5
- 76 4.0
- 77 4.5
- 78 5.0
- 79 5.0
- 80 5.0
- 81 3.0
- 82 1.0
- 83 1.0
- 84 1.0
- 85 1.0
- 86 1.0
- 87 1.0
- 88 1.0
- 89 1.0
- 90 2.0
- 91 3.0
- 92 2.5
- 93 2.0
- 94 2.0
- 95 3.0
- 96 4.0
- 97 5.0
- 98 6.0
- 99 3.5
- 100 1.0
- >>END_MODULE
- >>Per base N content pass
- #Base N-Count
- 1 0.0
- 2 0.0
- 3 0.0
- 4 0.0
- 5 0.0
- 6 0.0
- 7 0.0
- 8 0.0
- 9 0.0
- 10 0.0
- 11 0.0
- 12 0.0
- 13 0.0
- 14 0.0
- 15 0.0
- 16 0.0
- 17 0.0
- 18 0.0
- 19 0.0
- 20 0.0
- 21 0.0
- 22 0.0
- 23 0.0
- 24 0.0
- 25 0.0
- 26 0.04
- 27 0.02
- 28 0.0
- 29 0.02
- 30 0.0
- 31 0.0
- 32 0.04
- 33 0.02
- 34 0.02
- 35 0.02
- 36 0.02
- 37 0.04
- 38 0.02
- 39 0.04
- 40 0.0
- 41 0.06
- 42 0.06
- 43 0.02
- 44 0.02
- 45 0.0
- 46 0.0
- 47 0.04
- 48 0.0
- 49 0.02
- 50 0.04
- 51 0.04
- 52 0.02
- 53 0.02
- 54 0.45999999999999996
- >>END_MODULE
- >>Sequence Length Distribution pass
- #Length Count
- 54 5000.0
- >>END_MODULE
- >>Sequence Duplication Levels pass
- #Total Duplicate Percentage 0.66
- #Duplication Level Relative count
- 1 100.0
- 2 0.08053150795248641
- 3 0.040265753976243206
- 4 0.0
- 5 0.020132876988121603
- 6 0.0
- 7 0.040265753976243206
- 8 0.0
- 9 0.0
- 10++ 0.0
- >>END_MODULE
- >>Overrepresented sequences warn
- #Sequence Count Percentage Possible Source
- CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (96% over 33bp)
- CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC 7 0.13999999999999999 Illumina Paired End PCR Primer 2 (100% over 35bp)
- >>END_MODULE
- >>Kmer Content fail
- #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
- CCCCC 1110 9.557241 23.193876 44
- AAAAA 2130 4.1300144 5.698024 7
- CTCCC 530 3.5749238 11.56272 11
- CCTCC 510 3.440021 11.56272 14
- CTGGG 465 3.1575248 8.314476 45
- TGGAA 785 2.929684 6.397646 17
- GGGGG 335 2.9167063 10.660779 6
- GAATG 775 2.8923633 10.053445 20
- CCCAG 450 2.8820548 7.8420706 22
- GTGTG 520 2.7661672 6.513526 23
- TGTGT 660 2.744307 6.109576 27
- GGGAG 425 2.7401958 6.315732 6
- ATGGA 730 2.7244196 6.397646 20
- GCTGG 395 2.6821985 6.651581 16
- GGAGG 410 2.643483 7.894665 7
- GGAAT 700 2.612457 7.3115954 19
- GCAGG 400 2.5732677 14.17877 16
- CCTGG 370 2.5068476 6.6367774 7
- CAGCC 380 2.4337354 6.273657 4
- TGGGA 480 2.419065 7.40506 20
- AATGG 645 2.4071925 5.4836965 18
- GCCTC 355 2.3998654 6.622006 2
- CCCTC 355 2.394524 8.259085 13
- CCAGC 370 2.3696895 6.2736564 14
- GGAAG 495 2.3634295 14.031037 2
- GGCTG 345 2.3426795 9.97737 24
- CAGGA 490 2.3343499 13.99981 17
- CCAGG 360 2.3107867 6.2876506 11
- CTGTG 435 2.3088553 9.09864 44
- GCCTG 340 2.3035896 8.295971 5
- TCCCA 460 2.3028264 6.1297736 9
- CTGCC 340 2.2984629 8.277508 10
- CAGCA 480 2.2816207 10.47649 14
- TTCCT 545 2.256056 7.0961456 1
- CTCCT 415 2.1929073 6.4701333 15
- TCCCC 325 2.1921701 6.6072683 28
- CAGGC 335 2.1503155 6.2876506 14
- CCCCA 335 2.1407545 6.259694 20
- TGGTG 400 2.127821 6.513526 9
- CCCCT 315 2.1247187 6.607268 12
- GGCAG 330 2.122946 6.301676 16
- CTCTG 400 2.1183603 5.187652 16
- TTCCA 540 2.1177678 6.7228537 28
- CAGAG 440 2.0961509 5.833255 28
- CCCTG 310 2.095657 6.622006 24
- AGGGA 435 2.0769534 5.846266 1
- CTCAG 410 2.0570977 6.143447 24
- CTTCC 385 2.034384 6.4701333 17
- AGCAG 425 2.0246909 10.499857 15
- AGGAA 570 2.015381 10.390455 18
- TCCTC 380 2.0079634 5.1761065 1
- TCAGC 400 2.0069244 12.286894 44
- AGAGC 420 2.0008712 10.499858 5
- TCCTG 375 1.9859626 6.4845653 8
- TCTCC 375 1.9815428 5.1761065 8
- CACCC 310 1.9809967 6.259694 9
- TGTGG 370 1.9682345 5.210821 4
- GATGG 390 1.9654902 6.1708827 1
- TGGCT 370 1.9638538 9.098641 45
- TCCCT 370 1.9551222 5.1761065 37
- CAGGG 300 1.9299511 6.3016763 21
- AAGAG 545 1.9269869 9.524584 4
- CAGAA 545 1.9226985 6.0476103 6
- CTGAG 380 1.9108309 6.15715 11
- TCTCT 460 1.9041945 5.068676 8
- GAGGC 295 1.897785 6.301676 22
- CCCAC 295 1.885142 6.259694 4
- CCTGC 275 1.8590509 9.93301 6
- CCTGT 350 1.8535651 6.4845653 6
- TTTCC 445 1.8421009 5.0686755 14
- TGCCT 345 1.8270856 5.187652 12
- CACAC 380 1.8022629 5.8073177 17
- CCTCT 340 1.7965988 7.7641597 2
- TTCCC 340 1.7965986 6.470133 18
- GAAGA 500 1.767878 7.792842 26
- CTGGC 260 1.7615684 6.636777 8
- TTCAG 440 1.7294377 9.6255 12
- CTCTC 325 1.717337 5.1761065 3
- GTGGT 320 1.7022567 5.2108207 24
- GGGTG 250 1.7013805 8.333022 28
- TGCTT 410 1.7010024 5.0799813 4
- CTTTG 405 1.6802584 5.0799813 2
- AGAAG 475 1.6794841 5.1952276 22
- ACTCC 330 1.6520276 6.1297736 10
- CTGCT 310 1.6417291 6.4845653 3
- GCCCC 190 1.6395733 6.339712 37
- AGTGG 325 1.6379085 6.1708827 3
- TGGCA 325 1.6342632 6.1571493 16
- GGCTC 240 1.626063 6.636776 25
- ACACA 460 1.6192161 5.1721287 14
- GCTTT 390 1.6180266 5.0799813 5
- TTCTG 390 1.6180266 5.0799813 3
- TCCTT 390 1.6144258 6.0824113 16
- CCCAA 335 1.588837 5.8073177 10
- GCACA 330 1.5686142 5.8202715 18
- GTTCA 395 1.5525635 7.700401 11
- TCTTC 375 1.5523325 5.068676 4
- AGGCA 325 1.5482932 5.8332543 6
- GGGGA 240 1.5474048 6.3157325 7
- CCTTC 290 1.5323931 6.4701333 17
- ATGCC 305 1.5302798 12.286893 22
- GAAGG 320 1.5278738 5.8462653 8
- GGGAT 295 1.4867171 7.40506 21
- TGTGC 280 1.4861598 5.199224 7
- AACAG 420 1.4817125 5.1836653 10
- TCTTT 455 1.4755235 5.5590916 1
- TTGGC 275 1.4596211 5.199223 15
- GAGAT 385 1.4368514 6.397646 27
- TTTGG 345 1.4345239 6.1095753 3
- GGTTC 270 1.4330826 10.398446 10
- CCTTG 265 1.4034137 5.187652 18
- CCCTT 265 1.4002901 5.176106 14
- CTGTT 335 1.3898433 5.0799813 10
- CCTTT 335 1.3867503 5.068676 8
- GGCAC 215 1.3800533 6.2876506 17
- TTGAA 465 1.3564935 6.4295163 7
- CTTGG 255 1.3534669 5.1992235 18
- GTGTT 325 1.3513632 5.091313 28
- GGCCC 155 1.3405302 6.353853 2
- TGGTT 320 1.330573 5.091313 25
- TTCTT 410 1.3295923 7.941558 4
- GGGGT 195 1.327077 8.333022 45
- AAGGA 375 1.3259085 5.1952276 44
- CAGAT 350 1.3033215 5.471493 10
- CTGGT 245 1.3003898 5.1992235 12
- TGTCC 245 1.2974956 5.187652 21
- GCTCC 190 1.2844352 8.277508 26
- GACAG 265 1.2624544 5.833254 27
- GAGCG 195 1.2544682 12.603353 6
- TTGGG 235 1.2500948 6.5135255 6
- AATGC 335 1.2474647 10.031068 21
- GGCTT 235 1.2473125 5.199223 4
- TTTGC 295 1.223892 5.0799813 9
- GGTGT 230 1.223497 5.21082 27
- GATCG 235 1.181698 6.1571493 45
- AGCTC 225 1.1288949 6.1434464 25
- ACCCT 225 1.1263824 6.129773 10
- CGGAA 235 1.119535 9.333206 1
- CCCAT 220 1.1013516 6.129773 21
- TCTTG 265 1.0994283 5.0799813 21
- ATGCA 295 1.0985136 5.4714913 37
- GCTTG 205 1.0880812 5.199223 2
- AGCGG 165 1.061473 12.603352 7
- AACCA 300 1.0560105 5.1721287 22
- AACCT 280 1.0403365 5.4593143 13
- CCGAG 160 1.0270164 12.575301 25
- TTGCC 190 1.0062209 5.1876516 3
- ACTCA 265 0.9846043 5.4593153 11
- CTCAT 250 0.98044825 5.7624474 4
- GTTCC 185 0.9797416 6.4845653 27
- GAACC 205 0.97444224 5.820272 25
- GGCGG 110 0.9555928 10.637051 44
- GCGGT 130 0.8827489 13.303162 8
- GCGGG 100 0.86872077 6.3822303 45
- TGCCG 125 0.846908 14.93275 23
- AGGCG 120 0.7719804 6.3016763 15
- CGGTT 140 0.74307984 10.398446 9
- GCCGA 115 0.738168 12.575301 24
- CGAGA 130 0.61931723 9.333206 26
- CGGGA 85 0.5468194 6.301676 24
- CACGG 85 0.54560244 6.2876506 37
- >>END_MODULE