/test-data/customTrack2.bed

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 349 lines · 349 code · 0 blank · 0 comment · 0 complexity · d4e0e4098edfa9907b0e5f3064200c41 MD5 · raw file

  1. chr2 36124 36160 GC_rich 29 +
  2. chr2 36572 36711 (CCCCG)n 247 +
  3. chr2 36610 36800 C-rich 392 +
  4. chr2 37778 37853 GA-rich 206 +
  5. chr2 38158 39025 L1PA10 6050 +
  6. chr2 39034 39201 L1M4c 431 -
  7. chr2 39235 39279 MIR 201 +
  8. chr2 39436 40499 L1PA16 5353 +
  9. chr2 40733 40949 L1M5 321 +
  10. chr2 41007 41090 Charlie1 360 +
  11. chr2 41090 41137 LTR45 532 -
  12. chr2 41137 41554 MSTB 2312 +
  13. chr2 41554 41696 LTR45B 626 -
  14. chr2 41651 41716 MER5A1 236 -
  15. chr2 41739 41815 LTR45 469 -
  16. chr2 41852 41969 Charlie1 236 +
  17. chr2 41987 42034 FLAM_C 702 +
  18. chr2 42034 42445 MSTA 2481 +
  19. chr2 42445 42548 FLAM_C 702 +
  20. chr2 42565 42681 Charlie1 470 +
  21. chr2 42761 42807 L2 185 -
  22. chr2 42835 43469 L1M5 903 +
  23. chr2 43469 43551 AluJ/FLAM 508 +
  24. chr2 43626 43721 MER33 393 +
  25. chr2 43770 43929 L1M5 262 +
  26. chr2 44897 45496 LTR71B 1895 -
  27. chr2 45970 46426 L1M2b 1705 +
  28. chr2 46426 46670 THE1B 1704 -
  29. chr2 46744 46941 MER52D 245 +
  30. chr2 47216 47483 MER52D 1052 +
  31. chr2 47484 48495 MER52D 4223 +
  32. chr2 48495 49053 MER52-int 3942 +
  33. chr2 49172 49903 MER52-int 5089 +
  34. chr2 49932 50066 THE1B 735 -
  35. chr2 50070 51136 L1M2b 3786 +
  36. chr2 51136 51399 AluY 2214 +
  37. chr2 51399 51727 L1M2b 3786 +
  38. chr2 51719 52002 L1MA5 1983 +
  39. chr2 52002 52275 AluJb 1906 +
  40. chr2 52289 52336 (TAAA)n 423 +
  41. chr2 52336 52400 L1MA5 1983 +
  42. chr2 52400 52625 AluSq 1665 +
  43. chr2 52625 52683 L1MA5 1983 +
  44. chr2 52709 52837 FLAM_C 734 -
  45. chr2 54453 54517 MER94 494 +
  46. chr2 54517 54809 AluSx 2081 -
  47. chr2 54809 54860 MER94 494 +
  48. chr2 54866 54998 MIR3 332 +
  49. chr2 59062 59093 AT_rich 31 +
  50. chr2 60498 60560 MIRb 192 +
  51. chr2 61205 61717 MLT1H 754 +
  52. chr2 62079 62552 MLT1D 2121 +
  53. chr2 62909 63061 MER67A 375 +
  54. chr2 63742 64034 AluSx 1506 -
  55. chr2 64185 64306 MLT1H 280 -
  56. chr2 64641 65101 MER4A1 3135 +
  57. chr2 66342 66707 THE1B 2550 -
  58. chr2 66707 68238 MLT1H-int 3238 -
  59. chr2 68240 68605 THE1B 2399 -
  60. chr2 69792 69907 MIRb 240 +
  61. chr2 69909 70264 MER4A1 2647 -
  62. chr2 70452 70639 MIR 228 +
  63. chr2 70876 71234 MLT1J1 575 -
  64. chr2 72494 72620 L1ME3B 400 -
  65. chr2 72645 73168 MER90a 2062 -
  66. chr2 74780 74914 MIRb 213 +
  67. chr2 74983 75046 MIR3 180 +
  68. chr2 75251 75291 MIRm 198 -
  69. chr2 75313 75430 MIRb 215 -
  70. chr2 75652 75823 MIRb 225 +
  71. chr2 77049 77357 AluJo 1747 +
  72. chr2 77438 77474 AT_rich 22 +
  73. chr2 77475 77811 L1MC4 683 -
  74. chr2 77813 78125 L1MC4a 1528 -
  75. chr2 78125 78408 AluJo 1550 +
  76. chr2 78408 78515 L1MC4a 1528 -
  77. chr2 78515 78553 (CA)n 342 +
  78. chr2 78553 78726 L1MC4a 1528 -
  79. chr2 79305 79613 L1MC4 506 +
  80. chr2 80122 80210 L1MC4 231 +
  81. chr2 80251 80559 L1MC 1036 +
  82. chr2 80569 80809 L1PA7 11967 +
  83. chr2 80809 82246 LTR12C 9549 +
  84. chr2 82246 84045 L1PA7 11967 +
  85. chr2 84045 85055 LTR5A 8123 +
  86. chr2 85055 89392 L1PA7 20590 +
  87. chr2 89556 89820 AluY 1994 +
  88. chr2 90168 90462 L2 554 -
  89. chr2 90462 90717 AluSx 1621 +
  90. chr2 90717 90841 L2 554 -
  91. chr2 91794 91832 AT_rich 24 +
  92. chr2 92171 92375 MIRb 363 +
  93. chr2 92468 93502 L1MA4A 4118 -
  94. chr2 93497 96075 L1MA4A 11775 -
  95. chr2 96408 97310 L1MA4A 9242 -
  96. chr2 97310 97600 AluSx 2107 -
  97. chr2 97600 99410 L1MA4A 9242 -
  98. chr2 99671 99720 (GGAA)n 317 +
  99. chr2 100500 100526 AT_rich 26 +
  100. chr2 100790 100850 L1M5 226 +
  101. chr2 101493 101736 MIRb 664 -
  102. chr2 102084 102384 AluSx 2334 -
  103. chr2 103029 103104 L2 287 +
  104. chr2 103525 103696 L3 282 -
  105. chr2 103888 104191 AluSx 2269 +
  106. chr2 104206 104332 L2 292 +
  107. chr2 104498 104580 MIRb 248 -
  108. chr2 105772 105883 L2 270 +
  109. chr2 106293 106594 AluSc 2269 +
  110. chr2 106705 107055 L2 539 -
  111. chr2 107056 107905 MER45B 3388 -
  112. chr2 107963 108173 Charlie4a 1340 +
  113. chr2 108173 108471 AluSg 2024 +
  114. chr2 108471 108687 Charlie4a 1340 +
  115. chr2 108706 109100 L2 906 -
  116. chr2 109366 109439 HAL1 264 -
  117. chr2 109439 109730 AluSx 1921 +
  118. chr2 109730 109812 HAL1 264 -
  119. chr2 110514 110571 MER5B 225 +
  120. chr2 111186 111304 MER94 459 +
  121. chr2 111642 111836 MIR 654 -
  122. chr2 111936 112346 L2 309 -
  123. chr2 112452 112477 (TGAA)n 225 +
  124. chr2 112938 113010 MIRb 180 +
  125. chr2 115295 115402 MIR 343 +
  126. chr2 115424 115551 MIR 412 -
  127. chr2 116167 117645 SVA 11488 +
  128. chr2 117805 118013 MIRb 306 -
  129. chr2 118824 119831 L1PB 5354 -
  130. chr2 120000 120038 (TAAA)n 197 +
  131. chr2 120670 120807 MER5B 553 +
  132. chr2 120921 121233 AluJo 1929 -
  133. chr2 122648 122930 AluSp 2141 +
  134. chr2 123099 123410 AluJb 1619 +
  135. chr2 123519 123681 L1ME3A 325 +
  136. chr2 123710 123775 LTR43 242 -
  137. chr2 123841 124183 LTR43B 1146 -
  138. chr2 124264 124603 L1ME3A 939 +
  139. chr2 125097 125705 L1MC1 3512 +
  140. chr2 125706 126048 MSTA 2544 +
  141. chr2 126048 126347 AluSx 1849 +
  142. chr2 126347 126409 MSTA 2544 +
  143. chr2 127755 128321 L1MA9 2460 -
  144. chr2 128314 128822 L1MA9 1912 +
  145. chr2 128822 128844 AT_rich 22 +
  146. chr2 128906 129305 MLT1A1 1893 +
  147. chr2 131614 132043 MSTA 2057 -
  148. chr2 132398 132645 AluY 1947 +
  149. chr2 133039 133106 AT_rich 32 +
  150. chr2 133111 133341 PABL_A 1802 -
  151. chr2 133341 134756 PABL_A-int 10971 -
  152. chr2 135007 135054 L2 184 -
  153. chr2 135074 135147 L2 249 +
  154. chr2 135270 135471 L1MEb 333 -
  155. chr2 135510 135690 Tigger1 669 +
  156. chr2 135672 135884 Tigger1 1251 +
  157. chr2 135884 135947 L1M2 8741 -
  158. chr2 135947 136253 AluSp 2298 -
  159. chr2 136253 136888 L1M2 8741 -
  160. chr2 136888 136922 (TTTA)n 224 +
  161. chr2 136922 137816 L1M2 8741 -
  162. chr2 137816 138169 THE1B 2055 -
  163. chr2 138169 138639 L1M2 8741 -
  164. chr2 138641 139121 MER44C 2479 +
  165. chr2 139144 139808 MER4A 2394 +
  166. chr2 139810 140042 MER44C 1272 +
  167. chr2 140046 140215 L1M2 664 -
  168. chr2 140215 140675 MER4A1 3468 +
  169. chr2 140675 140763 L1M2 664 -
  170. chr2 141552 142024 L1MEb 591 -
  171. chr2 142058 142213 MER51A 538 +
  172. chr2 142215 142519 MER51B 1633 +
  173. chr2 142638 142787 HAL1b 319 -
  174. chr2 143395 143564 LTR17 1225 -
  175. chr2 143580 143698 AluY 902 +
  176. chr2 143698 144298 LTR17 4934 -
  177. chr2 144298 144589 HERV17 2415 -
  178. chr2 144579 144620 HERV17 305 -
  179. chr2 144612 148188 HERV17 30373 -
  180. chr2 148187 150021 HERV17 13802 -
  181. chr2 150021 150782 LTR17 6037 -
  182. chr2 151296 151390 L2 190 -
  183. chr2 152021 152314 AluJb 1532 +
  184. chr2 153860 154064 L3 484 +
  185. chr2 154147 155500 L1PA7 7363 +
  186. chr2 155550 155627 L4 184 +
  187. chr2 156586 156729 MIRb 240 +
  188. chr2 157888 159232 L1MC2 4364 +
  189. chr2 159933 160007 MIR3 196 +
  190. chr2 160097 160129 AT_rich 32 +
  191. chr2 160901 160950 (CA)n 378 +
  192. chr2 161462 161773 AluY 2636 +
  193. chr2 161926 162002 Kanga1 233 -
  194. chr2 164118 164211 HAL1 264 +
  195. chr2 164330 164435 (CATATA)n 450 +
  196. chr2 164435 164679 AluSx 1559 -
  197. chr2 164780 164802 AT_rich 22 +
  198. chr2 164931 165118 MIRb 183 -
  199. chr2 167243 167542 AluSx 1867 +
  200. chr2 168414 168510 L1PB1 3181 +
  201. chr2 168510 168537 (TA)n 182 +
  202. chr2 168537 168572 (CA)n 324 +
  203. chr2 168572 168923 L1PB1 3181 +
  204. chr2 169914 170344 LTR35-int 677 +
  205. chr2 170349 170763 LTR35-int 1559 +
  206. chr2 170771 170917 L1PA4 1004 +
  207. chr2 170998 172290 LTR57-int 5968 +
  208. chr2 171342 173675 LOR1-int 6255 +
  209. chr2 173750 173972 LOR1-int 625 +
  210. chr2 174098 174198 LTR49-int 367 +
  211. chr2 174202 174392 LOR1-int 1108 +
  212. chr2 174395 174681 MER49 4056 +
  213. chr2 174681 175052 THE1C 2588 +
  214. chr2 175052 175497 MER49 4056 +
  215. chr2 175684 176055 LOR1-int 351 +
  216. chr2 176246 176698 LTR35 736 +
  217. chr2 176818 176841 AT_rich 23 +
  218. chr2 176990 177493 MLT1F2 1583 +
  219. chr2 177497 177522 (CAAAAA)n 225 +
  220. chr2 177538 177765 L1MC4 481 +
  221. chr2 177880 178397 LTR22C 2762 -
  222. chr2 178522 178630 AluJb 728 +
  223. chr2 178895 178998 L1M5 261 +
  224. chr2 179170 179198 AT_rich 21 +
  225. chr2 179978 180161 MER20 331 +
  226. chr2 180330 180509 L1MB2 1075 +
  227. chr2 180509 181898 LTR12C 8168 -
  228. chr2 181898 181924 L1MB2 1075 +
  229. chr2 181903 182185 L1MB2 1132 +
  230. chr2 182394 182433 (T)n 246 +
  231. chr2 182441 182653 AluSg 1644 -
  232. chr2 185331 185446 L1M4 246 -
  233. chr2 185937 186497 MER92B 900 -
  234. chr2 189807 189920 L2 242 +
  235. chr2 190069 190208 L2 229 -
  236. chr2 190610 190778 MIR 271 -
  237. chr2 190936 191064 MIRb 241 +
  238. chr2 192383 192531 L1MC4a 279 -
  239. chr2 192614 192967 MSTA 1342 +
  240. chr2 193615 193737 L1M4 416 -
  241. chr2 194139 194517 MSTA 2196 +
  242. chr2 195051 195659 MER4B 3688 +
  243. chr2 196994 197082 (GGAA)n 1047 +
  244. chr2 197082 197262 (GGGA)n 1431 +
  245. chr2 197262 197302 (GGAA)n 1047 +
  246. chr2 197302 197482 (GGGA)n 1347 +
  247. chr2 197482 197502 (GGAA)n 1047 +
  248. chr2 197502 197682 (GGGA)n 1368 +
  249. chr2 197682 197714 (GGAA)n 1047 +
  250. chr2 197714 197752 polypurine 219 +
  251. chr2 198076 198423 MLT1A0 1472 +
  252. chr2 199454 199677 L2 323 +
  253. chr2 199741 199990 L2 449 +
  254. chr2 201304 201337 AT_rich 26 +
  255. chr2 201543 201737 MIRb 344 -
  256. chr2 202374 203301 Tigger1 6366 -
  257. chr2 203546 203694 L1MC2 594 -
  258. chr2 204844 204905 Alu 426 +
  259. chr2 204907 205020 L1MD 245 -
  260. chr2 205310 205354 (CA)n 248 +
  261. chr2 205572 205611 AT_rich 25 +
  262. chr2 205757 206463 L1ME1 2227 -
  263. chr2 206478 206741 L1MA4 1087 -
  264. chr2 207057 207228 L1M3de 232 -
  265. chr2 207784 208051 L2 525 -
  266. chr2 208713 208734 AT_rich 21 +
  267. chr2 209284 209645 MLT1A0 1607 +
  268. chr2 210181 210214 (TAA)n 236 +
  269. chr2 211053 211149 MIR 223 -
  270. chr2 212441 212529 MER20 473 +
  271. chr2 213153 213232 MIRb 221 -
  272. chr2 215176 215279 Charlie2 435 -
  273. chr2 215309 215572 Charlie2 466 -
  274. chr2 215762 215892 L1MC4a 248 +
  275. chr2 216077 216489 L1MC4a 421 +
  276. chr2 217210 217559 L1MC4a 326 +
  277. chr2 217567 217588 AT_rich 21 +
  278. chr2 217889 217910 (TG)n 189 +
  279. chr2 219447 219753 AluYa5 2878 +
  280. chr2 220529 220769 AluSx 1445 -
  281. chr2 221199 221228 AT_rich 22 +
  282. chr2 221477 221524 (CATATA)n 240 +
  283. chr2 222442 222742 L1PA6 2387 -
  284. chr2 222746 222958 L1ME4a 234 +
  285. chr2 224460 224564 MIRb 253 -
  286. chr2 224875 225175 AluSq 2314 -
  287. chr2 226239 226463 MIR 272 +
  288. chr2 226463 226678 MIR 378 +
  289. chr2 227578 227831 L1MA4 1053 +
  290. chr2 228067 228259 LTR52 326 +
  291. chr2 228259 228303 (TG)n 396 +
  292. chr2 228303 228355 LTR52 326 +
  293. chr2 229207 229376 MER105 586 +
  294. chr2 229713 232723 L1M4b 6457 +
  295. chr2 232723 232751 (CAA)n 231 +
  296. chr2 232751 233606 L1M4 3745 +
  297. chr2 233633 233769 LTR16A1 309 +
  298. chr2 233780 233825 MIRb 246 +
  299. chr2 234214 234524 AluY 2373 +
  300. chr2 234527 234584 (GAAA)n 326 +
  301. chr2 234597 234715 MIR 217 -
  302. chr2 235457 235691 MIR 371 -
  303. chr2 235866 235892 (TAAAAA)n 201 +
  304. chr2 235913 236224 AluSq 2400 +
  305. chr2 236591 236642 GA-rich 202 +
  306. chr2 237758 237789 AT_rich 24 +
  307. chr2 241682 241737 MER5A 222 -
  308. chr2 242099 242222 MER5A 250 -
  309. chr2 243203 243830 MER41B 4374 +
  310. chr2 244057 244136 AT_rich 44 +
  311. chr2 244592 245160 MER4A 1940 +
  312. chr2 245335 245610 AluJo 1518 +
  313. chr2 246060 246409 L1ME2 2049 -
  314. chr2 246409 246714 AluSq 2369 +
  315. chr2 246714 247040 L1ME2 2049 -
  316. chr2 247032 247373 L1PREC2 1625 -
  317. chr2 247373 247786 MER57B 2701 +
  318. chr2 247790 248410 L1PREC2 3920 -
  319. chr2 248438 249129 L1MEc 575 -
  320. chr2 249353 249388 AT_rich 28 +
  321. chr2 249505 249889 L1MC 354 +
  322. chr2 253987 254010 GC_rich 23 +
  323. chr2 256504 257206 MER44C 3540 -
  324. chr2 257237 257619 L2 869 -
  325. chr2 257626 257758 MER105 414 -
  326. chr2 257758 258055 MER58B 701 -
  327. chr2 258065 258208 L2 435 -
  328. chr2 259635 259758 MER39 618 +
  329. chr2 259816 260040 MER39 688 +
  330. chr2 260145 260244 L2 235 +
  331. chr2 260590 260618 AT_rich 28 +
  332. chr2 260619 260678 MER21C 340 +
  333. chr2 260678 260979 MER77 442 +
  334. chr2 261078 261136 L2 193 +
  335. chr2 261228 261475 MER8 820 +
  336. chr2 261491 261567 Charlie9 244 -
  337. chr2 263033 263317 MSTD 409 -
  338. chr2 263469 263560 MER58A 287 +
  339. chr2 263885 264181 AluJo 1552 +
  340. chr2 265538 265751 MIR 405 -
  341. chr2 265969 265990 AT_rich 21 +
  342. chr2 266132 266443 L2 310 +
  343. chr2 268083 268107 AT_rich 24 +
  344. chr2 272348 272439 L2 215 +
  345. chr2 274262 274365 MER5A1 525 -
  346. chr2 274737 274812 MIR3 296 +
  347. chr2 275187 275231 MIR 229 +
  348. chr2 277448 277470 (A)n 198 +
  349. chr2 277738 277788 GC_rich 36 +