/test-data/gtf_filter_by_attribute_values_list_out2.gtf

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 48 lines · 48 code · 0 blank · 0 comment · 0 complexity · 3052479cabb10e3eeeac4aff2b784776 MD5 · raw file 

    

  1. chr19	Cufflinks	exon	61679	62596	.	+	.	gene_id "XLOC_000002"; transcript_id "TCONS_00000003"; exon_number "1"; oId "uc002loc.1"; class_code ".";
    2. 

  2. chr19	Cufflinks	exon	447490	447551	.	+	.	gene_id "XLOC_000003"; transcript_id "TCONS_00000006"; exon_number "1"; oId "uc010drq.1"; class_code "."; tss_id "TSS3";
    3. 

  3. chr19	Cufflinks	exon	449496	449825	.	+	.	gene_id "XLOC_000003"; transcript_id "TCONS_00000006"; exon_number "2"; oId "uc010drq.1"; class_code "."; tss_id "TSS3";
    4. 

  4. chr19	Cufflinks	exon	455745	456343	.	+	.	gene_id "XLOC_000003"; transcript_id "TCONS_00000006"; exon_number "3"; oId "uc010drq.1"; class_code "."; tss_id "TSS3";
    5. 

  5. chr19	Cufflinks	exon	458497	458844	.	+	.	gene_id "XLOC_000004"; transcript_id "TCONS_00000007"; exon_number "1"; oId "uc002lou.1"; class_code "."; tss_id "TSS4";
    6. 

  6. chr19	Cufflinks	exon	469889	470654	.	+	.	gene_id "XLOC_000004"; transcript_id "TCONS_00000007"; exon_number "2"; oId "uc002lou.1"; class_code "."; tss_id "TSS4";
    7. 

  7. chr19	Cufflinks	exon	482733	483108	.	+	.	gene_id "XLOC_000005"; transcript_id "TCONS_00000008"; exon_number "1"; oId "uc002lov.1"; class_code "."; tss_id "TSS5";
    8. 

  8. chr19	Cufflinks	exon	486837	486923	.	+	.	gene_id "XLOC_000005"; transcript_id "TCONS_00000008"; exon_number "2"; oId "uc002lov.1"; class_code "."; tss_id "TSS5";
    9. 

  9. chr19	Cufflinks	exon	487243	487340	.	+	.	gene_id "XLOC_000005"; transcript_id "TCONS_00000008"; exon_number "3"; oId "uc002lov.1"; class_code "."; tss_id "TSS5";
    10. 

  10. chr19	Cufflinks	exon	488013	488147	.	+	.	gene_id "XLOC_000005"; transcript_id "TCONS_00000008"; exon_number "4"; oId "uc002lov.1"; class_code "."; tss_id "TSS5";
    11. 

  11. chr19	Cufflinks	exon	492339	493087	.	+	.	gene_id "XLOC_000005"; transcript_id "TCONS_00000008"; exon_number "5"; oId "uc002lov.1"; class_code "."; tss_id "TSS5";
    12. 

  12. chr19	Cufflinks	exon	495027	495126	.	+	.	gene_id "XLOC_000006"; transcript_id "TCONS_00000009"; exon_number "1"; oId "uc002low.1"; class_code "."; tss_id "TSS6";
    13. 

  13. chr19	Cufflinks	exon	498280	498436	.	+	.	gene_id "XLOC_000006"; transcript_id "TCONS_00000009"; exon_number "2"; oId "uc002low.1"; class_code "."; tss_id "TSS6";
    14. 

  14. chr19	Cufflinks	exon	499542	499677	.	+	.	gene_id "XLOC_000006"; transcript_id "TCONS_00000009"; exon_number "3"; oId "uc002low.1"; class_code "."; tss_id "TSS6";
    15. 

  15. chr19	Cufflinks	exon	499922	500185	.	+	.	gene_id "XLOC_000006"; transcript_id "TCONS_00000009"; exon_number "4"; oId "uc002low.1"; class_code "."; tss_id "TSS6";
    16. 

  16. chr19	Cufflinks	exon	500630	500919	.	+	.	gene_id "XLOC_000006"; transcript_id "TCONS_00000009"; exon_number "5"; oId "uc002low.1"; class_code "."; tss_id "TSS6";
    17. 

  17. chr19	Cufflinks	exon	522325	522579	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "1"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    18. 

  18. chr19	Cufflinks	exon	531379	531461	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "2"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    19. 

  19. chr19	Cufflinks	exon	531646	531782	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "3"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    20. 

  20. chr19	Cufflinks	exon	532315	532591	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "4"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    21. 

  21. chr19	Cufflinks	exon	533306	533330	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "5"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    22. 

  22. chr19	Cufflinks	exon	533514	533582	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "6"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    23. 

  23. chr19	Cufflinks	exon	533750	534493	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000010"; exon_number "7"; oId "uc002loy.1"; class_code "."; tss_id "TSS7";
    24. 

  24. chr19	Cufflinks	exon	523537	523701	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "1"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    25. 

  25. chr19	Cufflinks	exon	530500	530656	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "2"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    26. 

  26. chr19	Cufflinks	exon	531379	531461	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "3"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    27. 

  27. chr19	Cufflinks	exon	531646	531782	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "4"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    28. 

  28. chr19	Cufflinks	exon	532315	532581	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "5"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    29. 

  29. chr19	Cufflinks	exon	533306	533330	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "6"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    30. 

  30. chr19	Cufflinks	exon	533514	533582	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "7"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    31. 

  31. chr19	Cufflinks	exon	533750	534493	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000013"; exon_number "8"; oId "uc002lpb.1"; class_code "."; tss_id "TSS8";
    32. 

  32. chr19	Cufflinks	exon	523537	523701	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "1"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    33. 

  33. chr19	Cufflinks	exon	530500	530656	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "2"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    34. 

  34. chr19	Cufflinks	exon	531379	531461	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "3"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    35. 

  35. chr19	Cufflinks	exon	531646	531782	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "4"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    36. 

  36. chr19	Cufflinks	exon	532315	532591	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "5"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    37. 

  37. chr19	Cufflinks	exon	533306	533330	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "6"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    38. 

  38. chr19	Cufflinks	exon	533514	533582	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "7"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    39. 

  39. chr19	Cufflinks	exon	533750	534493	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000012"; exon_number "8"; oId "uc002lpa.1"; class_code "."; tss_id "TSS8";
    40. 

  40. chr19	Cufflinks	exon	523537	523701	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "1"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    41. 

  41. chr19	Cufflinks	exon	528774	529121	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "2"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    42. 

  42. chr19	Cufflinks	exon	530500	530656	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "3"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    43. 

  43. chr19	Cufflinks	exon	531379	531461	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "4"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    44. 

  44. chr19	Cufflinks	exon	531646	531782	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "5"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    45. 

  45. chr19	Cufflinks	exon	532315	532591	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "6"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    46. 

  46. chr19	Cufflinks	exon	533306	533330	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "7"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    47. 

  47. chr19	Cufflinks	exon	533514	533582	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "8"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    48. 

  48. chr19	Cufflinks	exon	533750	534493	.	+	.	gene_id "XLOC_000007"; transcript_id "TCONS_00000011"; exon_number "9"; oId "uc002loz.1"; class_code "."; tss_id "TSS8";
    49.