/test-data/cuffdiff_out1.txt

https://bitbucket.org/cistrome/cistrome-harvard/ · Plain Text · 99 lines · 99 code · 0 blank · 0 comment · 0 complexity · b9a180ebae10087c28b0c299dcefd600 MD5 · raw file 

    

  1. test_id	gene_id	gene	locus	sample_1	sample_2	status	value_1	value_2	ln(fold_change)	test_stat	p_value	q_value	significant
    2. 

  2. TCONS_00000001	XLOC_000001	-	chr1:3204754-3204833	q1	q2	OK	0	5.42247e+06	1.79769e+308	1.79769e+308	0.0786496	0.550547	no
    3. 

  3. TCONS_00000002	XLOC_000002	-	chr1:3111449-3111490	q1	q2	OK	0	1.39654e+08	1.79769e+308	1.79769e+308	0.158655	0.777411	no
    4. 

  4. TCONS_00000003	XLOC_000003	-	chr1:3111545-3111576	q1	q2	OK	0	0	0	0	1	1.24051	no
    5. 

  5. TCONS_00000004	XLOC_000007	-	chr1:3189810-3190789	q1	q2	OK	2.49256e+06	5.29759e+06	0.753941	-1.11223	0.266041	0.790061	no
    6. 

  6. TCONS_00000005	XLOC_000007	-	chr1:3189810-3190789	q1	q2	OK	0	0	0	0	1	1.25641	no
    7. 

  7. TCONS_00000006	XLOC_000007	-	chr1:3189810-3190789	q1	q2	OK	0	0	0	0	1	1.27273	no
    8. 

  8. TCONS_00000007	XLOC_000009	-	chr1:3191512-3192077	q1	q2	OK	2.77423e+06	6.7156e+06	0.88406	-1.27269	0.203128	0.663553	no
    9. 

  9. TCONS_00000008	XLOC_000009	-	chr1:3191512-3192077	q1	q2	OK	1.11098e+07	3.03942e+07	1.00642	-0.806752	0.419809	1.17547	no
    10. 

  10. TCONS_00000009	XLOC_000011	-	chr1:3192441-3192494	q1	q2	OK	0	5.56023e+07	1.79769e+308	1.79769e+308	0.0416323	0.582852	no
    11. 

  11. TCONS_00000010	XLOC_000012	-	chr1:3192550-3192629	q1	q2	OK	0	2.71123e+06	1.79769e+308	1.79769e+308	0.158655	0.598008	no
    12. 

  12. TCONS_00000011	XLOC_000014	-	chr1:3192731-3192811	q1	q2	OK	0	0	0	0	1	1.28947	no
    13. 

  13. TCONS_00000012	XLOC_000015	-	chr1:3192940-3193042	q1	q2	OK	0	3.93442e+06	1.79769e+308	1.79769e+308	0.0416319	0.679987	no
    14. 

  14. TCONS_00000013	XLOC_000016	-	chr1:3194185-3194226	q1	q2	OK	0	1.39654e+08	1.79769e+308	1.79769e+308	0.158655	0.818327	no
    15. 

  15. TCONS_00000014	XLOC_000017	-	chr1:3194302-3194329	q1	q2	OK	0	0	0	0	1	1.30667	no
    16. 

  16. TCONS_00000015	XLOC_000019	-	chr1:3195083-3195110	q1	q2	OK	0	0	0	0	1	1.32432	no
    17. 

  17. TCONS_00000016	XLOC_000020	-	chr1:3195450-3195477	q1	q2	OK	0	0	0	0	1	1.34247	no
    18. 

  18. TCONS_00000017	XLOC_000021	-	chr1:3197089-3197116	q1	q2	OK	0	0	0	0	1	1.36111	no
    19. 

  19. TCONS_00000018	XLOC_000022	-	chr1:3197246-3197273	q1	q2	OK	0	0	0	0	1	1.38028	no
    20. 

  20. TCONS_00000019	XLOC_000023	-	chr1:3197346-3197373	q1	q2	OK	0	0	0	0	1	1.4	no
    21. 

  21. TCONS_00000020	XLOC_000025	-	chr1:3200022-3200191	q1	q2	OK	460348	460348	0	0	1	1.42029	no
    22. 

  22. TCONS_00000021	XLOC_000026	-	chr1:3200325-3200352	q1	q2	OK	0	0	0	0	1	1.44118	no
    23. 

  23. TCONS_00000022	XLOC_000029	-	chr1:3201077-3201481	q1	q2	OK	37206.6	186033	1.60944	-2.18263	0.0290634	2.84821	no
    24. 

  24. TCONS_00000023	XLOC_000031	-	chr1:3201672-3201699	q1	q2	OK	0	0	0	0	1	1.46269	no
    25. 

  25. TCONS_00000024	XLOC_000034	-	chr1:3212213-3212292	q1	q2	OK	0	5.42247e+06	1.79769e+308	1.79769e+308	0.0786496	0.642305	no
    26. 

  26. TCONS_00000025	XLOC_000035	-	chr1:3212367-3212439	q1	q2	OK	0	1.60978e+07	1.79769e+308	1.79769e+308	0.0416319	1.35997	no
    27. 

  27. TCONS_00000026	XLOC_000037	-	chr1:3213095-3213192	q1	q2	OK	2.38694e+06	1.19347e+06	-0.693147	0.565952	0.571426	1.55555	no
    28. 

  28. TCONS_00000027	XLOC_000040	-	chr1:3242633-3242923	q1	q2	OK	27029.9	243269	2.19722	-1.95282	0.0508409	0.553601	no
    29. 

  29. TCONS_00000028	XLOC_000042	-	chr1:3243018-3243079	q1	q2	OK	0	1.73712e+07	1.79769e+308	1.79769e+308	0.0786496	0.700696	no
    30. 

  30. TCONS_00000029	XLOC_000044	-	chr1:3243347-3243401	q1	q2	OK	0	3.32455e+07	1.79769e+308	1.79769e+308	0.0786496	0.770766	no
    31. 

  31. TCONS_00000030	XLOC_000046	-	chr1:3256974-3257011	q1	q2	OK	0	1.34946e+09	1.79769e+308	1.79769e+308	0.0786496	0.481729	no
    32. 

  32. TCONS_00000031	XLOC_000048	-	chr1:3277190-3277218	q1	q2	OK	0	0	0	0	1	1.48485	no
    33. 

  33. TCONS_00000032	XLOC_000049	-	chr1:3277913-3278390	q1	q2	OK	0	0	0	0	1	1.50769	no
    34. 

  34. TCONS_00000033	XLOC_000052	-	chr1:3280686-3280741	q1	q2	OK	0	1.49798e+07	1.79769e+308	1.79769e+308	0.158655	0.86379	no
    35. 

  35. TCONS_00000034	XLOC_000057	-	chr1:3290488-3290553	q1	q2	OK	0	6.39146e+06	1.79769e+308	1.79769e+308	0.158655	0.676009	no
    36. 

  36. TCONS_00000035	XLOC_000059	-	chr1:3290919-3291273	q1	q2	OK	6.40392e+06	0	-1.79769e+308	-1.79769e+308	0.0814259	0.469396	no
    37. 

  37. TCONS_00000036	XLOC_000059	-	chr1:3290919-3291273	q1	q2	OK	1.2964e+06	1.46758e+06	0.124018	-0.0764318	0.939076	2.42183	no
    38. 

  38. TCONS_00000037	XLOC_000060	-	chr1:3299443-3299664	q1	q2	OK	0	0	0	0	1	1.53125	no
    39. 

  39. TCONS_00000038	XLOC_000062	-	chr1:3300051-3300078	q1	q2	OK	0	0	0	0	1	1.55556	no
    40. 

  40. TCONS_00000039	XLOC_000065	-	chr1:3318999-3319051	q1	q2	OK	0	0	0	0	1	1.58065	no
    41. 

  41. TCONS_00000040	XLOC_000068	-	chr1:3355887-3356119	q1	q2	OK	0	0	0	0	1	1	no
    42. 

  42. TCONS_00000041	XLOC_000071	-	chr1:3363214-3363278	q1	q2	OK	0	0	0	0	1	1.01031	no
    43. 

  43. TCONS_00000042	XLOC_000073	-	chr1:3363753-3363849	q1	q2	OK	0	0	0	0	1	1.02083	no
    44. 

  44. TCONS_00000043	XLOC_000075	-	chr1:3367135-3367162	q1	q2	OK	0	0	0	0	1	1.03158	no
    45. 

  45. TCONS_00000044	XLOC_000077	-	chr1:3367333-3367382	q1	q2	OK	0	0	0	0	1	1.04255	no
    46. 

  46. TCONS_00000045	XLOC_000080	-	chr1:3377211-3377262	q1	q2	OK	0	0	0	0	1	1.05376	no
    47. 

  47. TCONS_00000046	XLOC_000083	-	chr1:3391325-3391352	q1	q2	OK	0	0	0	0	1	1.06522	no
    48. 

  48. TCONS_00000047	XLOC_000084	-	chr1:3435841-3435880	q1	q2	OK	0	0	0	0	1	1.07692	no
    49. 

  49. TCONS_00000048	XLOC_000085	-	chr1:3447761-3447788	q1	q2	OK	0	0	0	0	1	1.08889	no
    50. 

  50. TCONS_00000049	XLOC_000086	-	chr1:3450906-3450965	q1	q2	OK	0	0	0	0	1	1.10112	no
    51. 

  51. TCONS_00000050	XLOC_000087	-	chr1:3451051-3451109	q1	q2	OK	0	0	0	0	1	1.11364	no
    52. 

  52. TCONS_00000051	XLOC_000004	-	chr1:3174765-3174792	q1	q2	OK	0	0	0	0	1	1.12644	no
    53. 

  53. TCONS_00000052	XLOC_000005	-	chr1:3187401-3187428	q1	q2	OK	0	0	0	0	1	1.13953	no
    54. 

  54. TCONS_00000053	XLOC_000006	-	chr1:3188521-3188548	q1	q2	OK	0	0	0	0	1	1.15294	no
    55. 

  55. TCONS_00000054	XLOC_000007	-	chr1:3189810-3190789	q1	q2	OK	171639	239968	0.335111	-1.01532	0.309956	0.893401	no
    56. 

  56. TCONS_00000055	XLOC_000008	-	chr1:3190858-3191434	q1	q2	OK	227564	240951	0.0571584	-0.115428	0.908106	2.40525	no
    57. 

  57. TCONS_00000056	XLOC_000009	-	chr1:3191512-3192077	q1	q2	OK	175955	319423	0.596288	-1.18662	0.235378	0.720847	no
    58. 

  58. TCONS_00000057	XLOC_000010	-	chr1:3192250-3192336	q1	q2	OK	1.91712e+06	1.91712e+06	0	0	1	1.16667	no
    59. 

  59. TCONS_00000058	XLOC_000013	-	chr1:3192649-3192676	q1	q2	OK	0	0	0	0	1	1.18072	no
    60. 

  60. TCONS_00000059	XLOC_000018	-	chr1:3194706-3194733	q1	q2	OK	0	0	0	0	1	1.19512	no
    61. 

  61. TCONS_00000060	XLOC_000024	-	chr1:3197425-3197452	q1	q2	OK	0	0	0	0	1	1.20988	no
    62. 

  62. TCONS_00000061	XLOC_000027	-	chr1:3200430-3200457	q1	q2	OK	0	0	0	0	1	1.225	no
    63. 

  63. TCONS_00000062	XLOC_000028	-	chr1:3201007-3201039	q1	q2	OK	0	0	0	0	1	2.27907	no
    64. 

  64. TCONS_00000063	XLOC_000029	-	chr1:3201077-3201481	q1	q2	OK	0	0	0	0	1	2.51282	no
    65. 

  65. TCONS_00000064	XLOC_000030	-	chr1:3201596-3201666	q1	q2	OK	9.11292e+06	0	-1.79769e+308	-1.79769e+308	0.0786496	0.513844	no
    66. 

  66. TCONS_00000065	XLOC_000032	-	chr1:3201725-3201809	q1	q2	OK	8.43162e+06	0	-1.79769e+308	-1.79769e+308	0.0416319	0.815985	no
    67. 

  67. TCONS_00000066	XLOC_000033	-	chr1:3211521-3211561	q1	q2	OK	0	0	0	0	1	2.13043	no
    68. 

  68. TCONS_00000067	XLOC_000036	-	chr1:3212717-3212801	q1	q2	OK	2.10791e+06	0	-1.79769e+308	-1.79769e+308	0.158655	0.647842	no
    69. 

  69. TCONS_00000068	XLOC_000038	-	chr1:3240606-3240633	q1	q2	OK	0	0	0	0	1	2.45	no
    70. 

  70. TCONS_00000069	XLOC_000039	-	chr1:3242479-3242512	q1	q2	OK	0	0	0	0	1	2.39024	no
    71. 

  71. TCONS_00000070	XLOC_000041	-	chr1:3242924-3243005	q1	q2	OK	0	0	0	0	1	2.33333	no
    72. 

  72. TCONS_00000071	XLOC_000043	-	chr1:3243108-3243154	q1	q2	OK	4.79961e+07	0	-1.79769e+308	-1.79769e+308	0.158655	0.740391	no
    73. 

  73. TCONS_00000072	XLOC_000045	-	chr1:3254079-3254106	q1	q2	OK	0	0	0	0	1	2.22727	no
    74. 

  74. TCONS_00000073	XLOC_000047	-	chr1:3277155-3277182	q1	q2	OK	0	0	0	0	1	2.17778	no
    75. 

  75. TCONS_00000074	XLOC_000049	-	chr1:3277913-3278390	q1	q2	OK	127495	27320.3	-1.54045	2.07809	0.037701	1.84735	no
    76. 

  76. TCONS_00000075	XLOC_000050	-	chr1:3280117-3280144	q1	q2	OK	0	0	0	0	1	2.08511	no
    77. 

  77. TCONS_00000076	XLOC_000051	-	chr1:3280498-3280525	q1	q2	OK	0	0	0	0	1	2.04167	no
    78. 

  78. TCONS_00000077	XLOC_000053	-	chr1:3282504-3282531	q1	q2	OK	0	0	0	0	1	2	no
    79. 

  79. TCONS_00000078	XLOC_000054	-	chr1:3282650-3282677	q1	q2	OK	0	0	0	0	1	1.96	no
    80. 

  80. TCONS_00000079	XLOC_000055	-	chr1:3282760-3282832	q1	q2	OK	0	0	0	0	1	1.92157	no
    81. 

  81. TCONS_00000080	XLOC_000056	-	chr1:3284966-3284993	q1	q2	OK	0	0	0	0	1	1.88462	no
    82. 

  82. TCONS_00000081	XLOC_000058	-	chr1:3290798-3290859	q1	q2	OK	8.68561e+06	0	-1.79769e+308	-1.79769e+308	0.158655	0.706737	no
    83. 

  83. TCONS_00000082	XLOC_000059	-	chr1:3290919-3291273	q1	q2	OK	95795.4	28263.3	-1.22065	1.20083	0.229815	0.726513	no
    84. 

  84. TCONS_00000083	XLOC_000060	-	chr1:3299443-3299664	q1	q2	OK	449954	89990.7	-1.60944	1.40539	0.159905	0.540368	no
    85. 

  85. TCONS_00000084	XLOC_000061	-	chr1:3299691-3299733	q1	q2	OK	0	0	0	0	1	1.84906	no
    86. 

  86. TCONS_00000085	XLOC_000063	-	chr1:3307748-3307775	q1	q2	OK	0	0	0	0	1	1.81481	no
    87. 

  87. TCONS_00000086	XLOC_000064	-	chr1:3318620-3318647	q1	q2	OK	0	0	0	0	1	1.78182	no
    88. 

  88. TCONS_00000087	XLOC_000066	-	chr1:3330527-3330554	q1	q2	OK	0	0	0	0	1	1.75	no
    89. 

  89. TCONS_00000088	XLOC_000067	-	chr1:3351240-3351311	q1	q2	OK	4.27915e+06	0	-1.79769e+308	-1.79769e+308	0.158655	0.555293	no
    90. 

  90. TCONS_00000089	XLOC_000068	-	chr1:3355887-3356119	q1	q2	OK	281197	0	-1.79769e+308	-1.79769e+308	0.0416319	1.01998	no
    91. 

  91. TCONS_00000090	XLOC_000069	-	chr1:3356180-3356225	q1	q2	OK	5.72196e+07	0	-1.79769e+308	-1.79769e+308	0.158655	0.57586	no
    92. 

  92. TCONS_00000091	XLOC_000070	-	chr1:3363076-3363176	q1	q2	OK	2.1224e+06	0	-1.79769e+308	-1.79769e+308	0.0786496	0.592897	no
    93. 

  93. TCONS_00000092	XLOC_000072	-	chr1:3363387-3363446	q1	q2	OK	3.08417e+07	0	-1.79769e+308	-1.79769e+308	0.0416323	0.509995	no
    94. 

  94. TCONS_00000093	XLOC_000074	-	chr1:3364871-3364919	q1	q2	OK	3.50371e+07	0	-1.79769e+308	-1.79769e+308	0.158655	0.621929	no
    95. 

  95. TCONS_00000094	XLOC_000076	-	chr1:3367210-3367237	q1	q2	OK	0	0	0	0	1	1.7193	no
    96. 

  96. TCONS_00000095	XLOC_000078	-	chr1:3369580-3369607	q1	q2	OK	0	0	0	0	1	1.68966	no
    97. 

  97. TCONS_00000096	XLOC_000079	-	chr1:3375001-3375028	q1	q2	OK	0	0	0	0	1	1.66102	no
    98. 

  98. TCONS_00000097	XLOC_000081	-	chr1:3379888-3379915	q1	q2	OK	0	0	0	0	1	1.63333	no
    99. 

  99. TCONS_00000098	XLOC_000082	-	chr1:3386739-3386836	q1	q2	OK	0	0	0	0	1	1.60656	no
    100.