/test-data/picard_MD_output3.txt
https://bitbucket.org/cistrome/cistrome-harvard/ · Plain Text · 112 lines · 109 code · 3 blank · 0 comment · 0 complexity · 394c7465834c56ddb92f775840e0bb49 MD5 · raw file
- ## net.sf.picard.metrics.StringHeader
- # net.sf.picard.sam.MarkDuplicates INPUT=picard_input_tiny_coord.sam OUTPUT=picard_MD_output4_.sam METRICS_FILE=picard_MD_output3_.txt REMOVE_DUPLICATES=true ASSUME_SORTED=false READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VALIDATION_STRINGENCY=LENIENT MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 TMP_DIR=/tmp/kpvincent VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
- ## net.sf.picard.metrics.StringHeader
- # Started on: Tue Apr 19 15:32:38 EDT 2011
- ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics
- LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE
- 1 3 1 1 1 0 0.428571 3
- ## HISTOGRAM java.lang.Double
- BIN VALUE
- 1.0 0.948181
- 2.0 1.296997
- 3.0 1.425319
- 4.0 1.472527
- 5.0 1.489893
- 6.0 1.496282
- 7.0 1.498632
- 8.0 1.499497
- 9.0 1.499815
- 10.0 1.499932
- 11.0 1.499975
- 12.0 1.499991
- 13.0 1.499997
- 14.0 1.499999
- 15.0 1.5
- 16.0 1.5
- 17.0 1.5
- 18.0 1.5
- 19.0 1.5
- 20.0 1.5
- 21.0 1.5
- 22.0 1.5
- 23.0 1.5
- 24.0 1.5
- 25.0 1.5
- 26.0 1.5
- 27.0 1.5
- 28.0 1.5
- 29.0 1.5
- 30.0 1.5
- 31.0 1.5
- 32.0 1.5
- 33.0 1.5
- 34.0 1.5
- 35.0 1.5
- 36.0 1.5
- 37.0 1.5
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- 40.0 1.5
- 41.0 1.5
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- 43.0 1.5
- 44.0 1.5
- 45.0 1.5
- 46.0 1.5
- 47.0 1.5
- 48.0 1.5
- 49.0 1.5
- 50.0 1.5
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- 53.0 1.5
- 54.0 1.5
- 55.0 1.5
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- 59.0 1.5
- 60.0 1.5
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- 62.0 1.5
- 63.0 1.5
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- 73.0 1.5
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- 75.0 1.5
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- 80.0 1.5
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- 86.0 1.5
- 87.0 1.5
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- 90.0 1.5
- 91.0 1.5
- 92.0 1.5
- 93.0 1.5
- 94.0 1.5
- 95.0 1.5
- 96.0 1.5
- 97.0 1.5
- 98.0 1.5
- 99.0 1.5
- 100.0 1.5