/test-data/blastp_human_vs_pdb_seg_no.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 322 lines · 322 code · 0 blank · 0 comment · 0 complexity · ae755717a30f27c656264117545e43ea MD5 · raw file 

    

  1. <?xml version="1.0"?>
    2. 

  2. <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
    3. 

  3. <BlastOutput>
    4. 

  4.   <BlastOutput_program>blastp</BlastOutput_program>
    5. 

  5.   <BlastOutput_version>BLASTP 2.2.24+</BlastOutput_version>
    6. 

  6.   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
    7. 

  7.   <BlastOutput_db>/data/blastdb/pdbaa</BlastOutput_db>
    8. 

  8.   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
    9. 

  9.   <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
    10. 

  10.   <BlastOutput_query-len>406</BlastOutput_query-len>
    11. 

  11.   <BlastOutput_param>
    12. 

  12.     <Parameters>
    13. 

  13.       <Parameters_matrix>BLOSUM62</Parameters_matrix>
    14. 

  14.       <Parameters_expect>1e-08</Parameters_expect>
    15. 

  15.       <Parameters_gap-open>11</Parameters_gap-open>
    16. 

  16.       <Parameters_gap-extend>1</Parameters_gap-extend>
    17. 

  17.       <Parameters_filter>F</Parameters_filter>
    18. 

  18.     </Parameters>
    19. 

  19.   </BlastOutput_param>
    20. 

  20.   <BlastOutput_iterations>
    21. 

  21.     <Iteration>
    22. 

  22.       <Iteration_iter-num>1</Iteration_iter-num>
    23. 

  23.       <Iteration_query-ID>Query_1</Iteration_query-ID>
    24. 

  24.       <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
    25. 

  25.       <Iteration_query-len>406</Iteration_query-len>
    26. 

  26.       <Iteration_hits>
    27. 

  27.         <Hit>
    28. 

  28.           <Hit_num>1</Hit_num>
    29. 

  29.           <Hit_id>gi|193885198|pdb|2R2J|A</Hit_id>
    30. 

  30.           <Hit_def>Chain A, Crystal Structure Of Human Erp44</Hit_def>
    31. 

  31.           <Hit_accession>2R2J_A</Hit_accession>
    32. 

  32.           <Hit_len>382</Hit_len>
    33. 

  33.           <Hit_hsps>
    34. 

  34.             <Hsp>
    35. 

  35.               <Hsp_num>1</Hsp_num>
    36. 

  36.               <Hsp_bit-score>768.073791748238</Hsp_bit-score>
    37. 

  37.               <Hsp_score>1982</Hsp_score>
    38. 

  38.               <Hsp_evalue>0</Hsp_evalue>
    39. 

  39.               <Hsp_query-from>26</Hsp_query-from>
    40. 

  40.               <Hsp_query-to>406</Hsp_query-to>
    41. 

  41.               <Hsp_hit-from>2</Hsp_hit-from>
    42. 

  42.               <Hsp_hit-to>382</Hsp_hit-to>
    43. 

  43.               <Hsp_query-frame>0</Hsp_query-frame>
    44. 

  44.               <Hsp_hit-frame>0</Hsp_hit-frame>
    45. 

  45.               <Hsp_identity>370</Hsp_identity>
    46. 

  46.               <Hsp_positive>372</Hsp_positive>
    47. 

  47.               <Hsp_gaps>0</Hsp_gaps>
    48. 

  48.               <Hsp_align-len>381</Hsp_align-len>
    49. 

  49.               <Hsp_qseq>PVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL</Hsp_qseq>
    50. 

  50.               <Hsp_hseq>PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL</Hsp_hseq>
    51. 

  51.               <Hsp_midline>P+ +EITSLDTENIDEILNNADVALVNFYADWCRFSQ LHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG   KREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPD VYLGA TNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFH KEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRH YVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL</Hsp_midline>
    52. 

  52.             </Hsp>
    53. 

  53.           </Hit_hsps>
    54. 

  54.         </Hit>
    55. 

  55.         <Hit>
    56. 

  56.           <Hit_num>2</Hit_num>
    57. 

  57.           <Hit_id>gi|88192228|pdb|2B5E|A</Hit_id>
    58. 

  58.           <Hit_def>Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase &gt;gi|206581884|pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase.</Hit_def>
    59. 

  59.           <Hit_accession>2B5E_A</Hit_accession>
    60. 

  60.           <Hit_len>504</Hit_len>
    61. 

  61.           <Hit_hsps>
    62. 

  62.             <Hsp>
    63. 

  63.               <Hsp_num>1</Hsp_num>
    64. 

  64.               <Hsp_bit-score>95.130132620622</Hsp_bit-score>
    65. 

  65.               <Hsp_score>235</Hsp_score>
    66. 

  66.               <Hsp_evalue>4.15033135540548e-20</Hsp_evalue>
    67. 

  67.               <Hsp_query-from>25</Hsp_query-from>
    68. 

  68.               <Hsp_query-to>306</Hsp_query-to>
    69. 

  69.               <Hsp_hit-from>10</Hsp_hit-from>
    70. 

  70.               <Hsp_hit-to>283</Hsp_hit-to>
    71. 

  71.               <Hsp_query-frame>0</Hsp_query-frame>
    72. 

  72.               <Hsp_hit-frame>0</Hsp_hit-frame>
    73. 

  73.               <Hsp_identity>73</Hsp_identity>
    74. 

  74.               <Hsp_positive>133</Hsp_positive>
    75. 

  75.               <Hsp_gaps>24</Hsp_gaps>
    76. 

  76.               <Hsp_align-len>290</Hsp_align-len>
    77. 

  77.               <Hsp_qseq>TPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNI---IYKPPGHSAPDMVYLGA---MTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF-RH</Hsp_qseq>
    78. 

  78.               <Hsp_hseq>APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-----NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA--------ENADDDFKLSIYLPSAMDEP-VVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--NDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRH</Hsp_hseq>
    79. 

  79.               <Hsp_midline> P  + +  L T++ +E + + D+ L  F+A WC   + + P + +A++ + E+      +  A++DC ++ D+   + I  +P+LK+F+N  +    +Y G R+ +A+  ++ +Q    +  + DL      +     +I    + D+D    F  +AN   +D  F+SA          + D+    IY P     P +VY G    + + DV   W+Q + +P   EI      +  E GLP   LF+   D E LE ++          +G +NF+  D  KF RH</Hsp_midline>
    80. 

  80.             </Hsp>
    81. 

  81.           </Hit_hsps>
    82. 

  82.         </Hit>
    83. 

  83.       </Iteration_hits>
    84. 

  84.       <Iteration_stat>
    85. 

  85.         <Statistics>
    86. 

  86.           <Statistics_db-num>49615</Statistics_db-num>
    87. 

  87.           <Statistics_db-len>11554246</Statistics_db-len>
    88. 

  88.           <Statistics_hsp-len>0</Statistics_hsp-len>
    89. 

  89.           <Statistics_eff-space>2039204827</Statistics_eff-space>
    90. 

  90.           <Statistics_kappa>0.041</Statistics_kappa>
    91. 

  91.           <Statistics_lambda>0.267</Statistics_lambda>
    92. 

  92.           <Statistics_entropy>0.14</Statistics_entropy>
    93. 

  93.         </Statistics>
    94. 

  94.       </Iteration_stat>
    95. 

  95.     </Iteration>
    96. 

  96.     <Iteration>
    97. 

  97.       <Iteration_iter-num>2</Iteration_iter-num>
    98. 

  98.       <Iteration_query-ID>Query_2</Iteration_query-ID>
    99. 

  99.       <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
    100. 

  100.       <Iteration_query-len>1161</Iteration_query-len>
    101. 

  101.       <Iteration_hits>
    102. 

  102.         <Hit>
    103. 

  103.           <Hit_num>1</Hit_num>
    104. 

  104.           <Hit_id>gi|73536291|pdb|2BUJ|A</Hit_id>
    105. 

  105.           <Hit_def>Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine &gt;gi|73536292|pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine</Hit_def>
    106. 

  106.           <Hit_accession>2BUJ_A</Hit_accession>
    107. 

  107.           <Hit_len>317</Hit_len>
    108. 

  108.           <Hit_hsps>
    109. 

  109.             <Hsp>
    110. 

  110.               <Hsp_num>1</Hsp_num>
    111. 

  111.               <Hsp_bit-score>105.530521170391</Hsp_bit-score>
    112. 

  112.               <Hsp_score>262</Hsp_score>
    113. 

  113.               <Hsp_evalue>1.04156432658542e-22</Hsp_evalue>
    114. 

  114.               <Hsp_query-from>40</Hsp_query-from>
    115. 

  115.               <Hsp_query-to>308</Hsp_query-to>
    116. 

  116.               <Hsp_hit-from>21</Hsp_hit-from>
    117. 

  117.               <Hsp_hit-to>294</Hsp_hit-to>
    118. 

  118.               <Hsp_query-frame>0</Hsp_query-frame>
    119. 

  119.               <Hsp_hit-frame>0</Hsp_hit-frame>
    120. 

  120.               <Hsp_identity>82</Hsp_identity>
    121. 

  121.               <Hsp_positive>130</Hsp_positive>
    122. 

  122.               <Hsp_gaps>15</Hsp_gaps>
    123. 

  123.               <Hsp_align-len>279</Hsp_align-len>
    124. 

  124.               <Hsp_qseq>GVRVFAVGRHQVTLEESLAEGGFSTVFLVR-THGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMNKKLQTG--FTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDG-VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPF------GESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDI</Hsp_qseq>
    125. 

  125.               <Hsp_hseq>GHMVIIDNKHYLFIQK-LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREAD-MHRLFNHPNILRLVAYCLRERGAKH-EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH--AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI</Hsp_hseq>
    126. 

  126.               <Hsp_midline>G  V    +H + +++ L EGGFS V LV   H G   ALKR+  +   D    +RE   M  L  H NI+  +   +        E  +L+ + + G + N++ +    G   TE ++L +    C  +  +H       HRDLK  NILL D G  VL D GS     ++ +       +++   +  T+SYRAPE+ ++     I  + D+W+LGC+LY + F   P+      G+S         +IP + R+S  +  L+  M+  DP  RP I</Hsp_midline>
    127. 

  127.             </Hsp>
    128. 

  128.           </Hit_hsps>
    129. 

  129.         </Hit>
    130. 

  130.         <Hit>
    131. 

  131.           <Hit_num>2</Hit_num>
    132. 

  132.           <Hit_id>gi|270346335|pdb|2WQM|A</Hit_id>
    133. 

  133.           <Hit_def>Chain A, Structure Of Apo Human Nek7 &gt;gi|270346336|pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7</Hit_def>
    134. 

  134.           <Hit_accession>2WQM_A</Hit_accession>
    135. 

  135.           <Hit_len>310</Hit_len>
    136. 

  136.           <Hit_hsps>
    137. 

  137.             <Hsp>
    138. 

  138.               <Hsp_num>1</Hsp_num>
    139. 

  139.               <Hsp_bit-score>86.2705423745229</Hsp_bit-score>
    140. 

  140.               <Hsp_score>212</Hsp_score>
    141. 

  141.               <Hsp_evalue>6.48475818195287e-17</Hsp_evalue>
    142. 

  142.               <Hsp_query-from>53</Hsp_query-from>
    143. 

  143.               <Hsp_query-to>311</Hsp_query-to>
    144. 

  144.               <Hsp_hit-from>36</Hsp_hit-from>
    145. 

  145.               <Hsp_hit-to>288</Hsp_hit-to>
    146. 

  146.               <Hsp_query-frame>0</Hsp_query-frame>
    147. 

  147.               <Hsp_hit-frame>0</Hsp_hit-frame>
    148. 

  148.               <Hsp_identity>74</Hsp_identity>
    149. 

  149.               <Hsp_positive>129</Hsp_positive>
    150. 

  150.               <Hsp_gaps>32</Hsp_gaps>
    151. 

  151.               <Hsp_align-len>272</Hsp_align-len>
    152. 

  152.               <Hsp_qseq>LEESLAEGGFSTVFLVRTH-GGIRCALKRMYVNNMPDLNV---CKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN--KKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQV---AICD----GNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQV</Hsp_qseq>
    153. 

  153.               <Hsp_hseq>IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN-HPNVIKYY---ASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLG--LGRFFSSKTTAAHSL------VGTPYYMSPERIHENG---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV</Hsp_hseq>
    154. 

  154.               <Hsp_midline>+E+ +  G FS V+       G+  ALK++ + ++ D      C +EI ++K+L+ H N++ Y     + I DN  E+ I++E   AG +   +   KK +    E  V + F   C A+  +H  +  ++HRD+K  N+ +   G   L D G    +F + +    + +        T  Y +PE I+  G      K+DIW+LGCLLY++     PF   ++   ++C      ++    +  YS  +  L+   + PDPE RPD+  V</Hsp_midline>
    155. 

  155.             </Hsp>
    156. 

  156.           </Hit_hsps>
    157. 

  157.         </Hit>
    158. 

  158.       </Iteration_hits>
    159. 

  159.       <Iteration_stat>
    160. 

  160.         <Statistics>
    161. 

  161.           <Statistics_db-num>49615</Statistics_db-num>
    162. 

  162.           <Statistics_db-len>11554246</Statistics_db-len>
    163. 

  163.           <Statistics_hsp-len>0</Statistics_hsp-len>
    164. 

  164.           <Statistics_eff-space>6524204778</Statistics_eff-space>
    165. 

  165.           <Statistics_kappa>0.041</Statistics_kappa>
    166. 

  166.           <Statistics_lambda>0.267</Statistics_lambda>
    167. 

  167.           <Statistics_entropy>0.14</Statistics_entropy>
    168. 

  168.         </Statistics>
    169. 

  169.       </Iteration_stat>
    170. 

  170.     </Iteration>
    171. 

  171.     <Iteration>
    172. 

  172.       <Iteration_iter-num>3</Iteration_iter-num>
    173. 

  173.       <Iteration_query-ID>Query_3</Iteration_query-ID>
    174. 

  174.       <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
    175. 

  175.       <Iteration_query-len>1382</Iteration_query-len>
    176. 

  176.       <Iteration_hits>
    177. 

  177.         <Hit>
    178. 

  178.           <Hit_num>1</Hit_num>
    179. 

  179.           <Hit_id>gi|116667097|pdb|2DTG|E</Hit_id>
    180. 

  180.           <Hit_def>Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab&apos;s</Hit_def>
    181. 

  181.           <Hit_accession>2DTG_E</Hit_accession>
    182. 

  182.           <Hit_len>897</Hit_len>
    183. 

  183.           <Hit_hsps>
    184. 

  184.             <Hsp>
    185. 

  185.               <Hsp_num>1</Hsp_num>
    186. 

  186.               <Hsp_bit-score>1846.24740474091</Hsp_bit-score>
    187. 

  187.               <Hsp_score>4781</Hsp_score>
    188. 

  188.               <Hsp_evalue>0</Hsp_evalue>
    189. 

  189.               <Hsp_query-from>28</Hsp_query-from>
    190. 

  190.               <Hsp_query-to>955</Hsp_query-to>
    191. 

  191.               <Hsp_hit-from>1</Hsp_hit-from>
    192. 

  192.               <Hsp_hit-to>897</Hsp_hit-to>
    193. 

  193.               <Hsp_query-frame>0</Hsp_query-frame>
    194. 

  194.               <Hsp_hit-frame>0</Hsp_hit-frame>
    195. 

  195.               <Hsp_identity>890</Hsp_identity>
    196. 

  196.               <Hsp_positive>893</Hsp_positive>
    197. 

  197.               <Hsp_gaps>31</Hsp_gaps>
    198. 

  198.               <Hsp_align-len>928</Hsp_align-len>
    199. 

  199.               <Hsp_qseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA</Hsp_qseq>
    200. 

  200.               <Hsp_hseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV------------PRPSRKRRSLGDVGNA-------------------GNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA</Hsp_hseq>
    201. 

  201.               <Hsp_midline>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDN+IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV            PRPSRKRRSLGDVGN                     + EEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLC +RKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA</Hsp_midline>
    202. 

  202.             </Hsp>
    203. 

  203.           </Hit_hsps>
    204. 

  204.         </Hit>
    205. 

  205.         <Hit>
    206. 

  206.           <Hit_num>2</Hit_num>
    207. 

  207.           <Hit_id>gi|114794482|pdb|2HR7|A</Hit_id>
    208. 

  208.           <Hit_def>Chain A, Insulin Receptor (Domains 1-3) &gt;gi|114794483|pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)</Hit_def>
    209. 

  209.           <Hit_accession>2HR7_A</Hit_accession>
    210. 

  210.           <Hit_len>486</Hit_len>
    211. 

  211.           <Hit_hsps>
    212. 

  212.             <Hsp>
    213. 

  213.               <Hsp_num>1</Hsp_num>
    214. 

  214.               <Hsp_bit-score>1016.91271779085</Hsp_bit-score>
    215. 

  215.               <Hsp_score>2628</Hsp_score>
    216. 

  216.               <Hsp_evalue>0</Hsp_evalue>
    217. 

  217.               <Hsp_query-from>28</Hsp_query-from>
    218. 

  218.               <Hsp_query-to>512</Hsp_query-to>
    219. 

  219.               <Hsp_hit-from>1</Hsp_hit-from>
    220. 

  220.               <Hsp_hit-to>485</Hsp_hit-to>
    221. 

  221.               <Hsp_query-frame>0</Hsp_query-frame>
    222. 

  222.               <Hsp_hit-frame>0</Hsp_hit-frame>
    223. 

  223.               <Hsp_identity>483</Hsp_identity>
    224. 

  224.               <Hsp_positive>485</Hsp_positive>
    225. 

  225.               <Hsp_gaps>0</Hsp_gaps>
    226. 

  226.               <Hsp_align-len>485</Hsp_align-len>
    227. 

  227.               <Hsp_qseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKI</Hsp_qseq>
    228. 

  228.               <Hsp_hseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI</Hsp_hseq>
    229. 

  229.               <Hsp_midline>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDN+IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGD+ASCENELLKFSYIRTSFDKI</Hsp_midline>
    230. 

  230.             </Hsp>
    231. 

  231.           </Hit_hsps>
    232. 

  232.         </Hit>
    233. 

  233.       </Iteration_hits>
    234. 

  234.       <Iteration_stat>
    235. 

  235.         <Statistics>
    236. 

  236.           <Statistics_db-num>49615</Statistics_db-num>
    237. 

  237.           <Statistics_db-len>11554246</Statistics_db-len>
    238. 

  238.           <Statistics_hsp-len>0</Statistics_hsp-len>
    239. 

  239.           <Statistics_eff-space>7824126603</Statistics_eff-space>
    240. 

  240.           <Statistics_kappa>0.041</Statistics_kappa>
    241. 

  241.           <Statistics_lambda>0.267</Statistics_lambda>
    242. 

  242.           <Statistics_entropy>0.14</Statistics_entropy>
    243. 

  243.         </Statistics>
    244. 

  244.       </Iteration_stat>
    245. 

  245.     </Iteration>
    246. 

  246.     <Iteration>
    247. 

  247.       <Iteration_iter-num>4</Iteration_iter-num>
    248. 

  248.       <Iteration_query-ID>Query_4</Iteration_query-ID>
    249. 

  249.       <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
    250. 

  250.       <Iteration_query-len>348</Iteration_query-len>
    251. 

  251.       <Iteration_hits>
    252. 

  252.         <Hit>
    253. 

  253.           <Hit_num>1</Hit_num>
    254. 

  254.           <Hit_id>gi|16975387|pdb|1JFP|A</Hit_id>
    255. 

  255.           <Hit_def>Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) &gt;gi|22219255|pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii) &gt;gi|157878065|pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form &gt;gi|157878066|pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form &gt;gi|157878298|pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin &gt;gi|157878299|pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin &gt;gi|157878979|pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution &gt;gi|157878980|pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution &gt;gi|157880263|pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution &gt;gi|157880264|pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution &gt;gi|157883606|pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin &gt;gi|157883607|pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin &gt;gi|157883830|pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin &gt;gi|157883831|pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin &gt;gi|157883860|pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of Ground- State Rhodopsin &gt;gi|157883861|pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin &gt;gi|157883862|pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin &gt;gi|157883863|pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin &gt;gi|157883864|pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin &gt;gi|157883865|pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin &gt;gi|157883866|pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin &gt;gi|159795066|pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin &gt;gi|159795067|pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin &gt;gi|192988480|pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State &gt;gi|192988481|pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State &gt;gi|195927457|pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal Crystal Form &gt;gi|197107530|pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin &gt;gi|197107531|pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin &gt;gi|206582030|pdb|3DQB|A Chain A, Crystal Structure Of The Active G-Protein-Coupled Receptor Opsin In Complex With A C-Terminal Peptide Derived From The Galpha Subunit Of Transducin</Hit_def>
    256. 

  256.           <Hit_accession>1JFP_A</Hit_accession>
    257. 

  257.           <Hit_len>348</Hit_len>
    258. 

  258.           <Hit_hsps>
    259. 

  259.             <Hsp>
    260. 

  260.               <Hsp_num>1</Hsp_num>
    261. 

  261.               <Hsp_bit-score>681.018687590916</Hsp_bit-score>
    262. 

  262.               <Hsp_score>1756</Hsp_score>
    263. 

  263.               <Hsp_evalue>0</Hsp_evalue>
    264. 

  264.               <Hsp_query-from>1</Hsp_query-from>
    265. 

  265.               <Hsp_query-to>348</Hsp_query-to>
    266. 

  266.               <Hsp_hit-from>1</Hsp_hit-from>
    267. 

  267.               <Hsp_hit-to>348</Hsp_hit-to>
    268. 

  268.               <Hsp_query-frame>0</Hsp_query-frame>
    269. 

  269.               <Hsp_hit-frame>0</Hsp_hit-frame>
    270. 

  270.               <Hsp_identity>325</Hsp_identity>
    271. 

  271.               <Hsp_positive>337</Hsp_positive>
    272. 

  272.               <Hsp_gaps>0</Hsp_gaps>
    273. 

  273.               <Hsp_align-len>348</Hsp_align-len>
    274. 

  274.               <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
    275. 

  275.               <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
    276. 

  276.               <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
    277. 

  277.             </Hsp>
    278. 

  278.           </Hit_hsps>
    279. 

  279.         </Hit>
    280. 

  280.         <Hit>
    281. 

  281.           <Hit_num>2</Hit_num>
    282. 

  282.           <Hit_id>gi|195927458|pdb|3C9M|A</Hit_id>
    283. 

  283.           <Hit_def>Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form</Hit_def>
    284. 

  284.           <Hit_accession>3C9M_A</Hit_accession>
    285. 

  285.           <Hit_len>348</Hit_len>
    286. 

  286.           <Hit_hsps>
    287. 

  287.             <Hsp>
    288. 

  288.               <Hsp_num>1</Hsp_num>
    289. 

  289.               <Hsp_bit-score>674.085095224404</Hsp_bit-score>
    290. 

  290.               <Hsp_score>1738</Hsp_score>
    291. 

  291.               <Hsp_evalue>0</Hsp_evalue>
    292. 

  292.               <Hsp_query-from>1</Hsp_query-from>
    293. 

  293.               <Hsp_query-to>348</Hsp_query-to>
    294. 

  294.               <Hsp_hit-from>1</Hsp_hit-from>
    295. 

  295.               <Hsp_hit-to>348</Hsp_hit-to>
    296. 

  296.               <Hsp_query-frame>0</Hsp_query-frame>
    297. 

  297.               <Hsp_hit-frame>0</Hsp_hit-frame>
    298. 

  298.               <Hsp_identity>324</Hsp_identity>
    299. 

  299.               <Hsp_positive>335</Hsp_positive>
    300. 

  300.               <Hsp_gaps>0</Hsp_gaps>
    301. 

  301.               <Hsp_align-len>348</Hsp_align-len>
    302. 

  302.               <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
    303. 

  303.               <Hsp_hseq>MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
    304. 

  304.               <Hsp_midline>M GTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
    305. 

  305.             </Hsp>
    306. 

  306.           </Hit_hsps>
    307. 

  307.         </Hit>
    308. 

  308.       </Iteration_hits>
    309. 

  309.       <Iteration_stat>
    310. 

  310.         <Statistics>
    311. 

  311.           <Statistics_db-num>49615</Statistics_db-num>
    312. 

  312.           <Statistics_db-len>11554246</Statistics_db-len>
    313. 

  313.           <Statistics_hsp-len>0</Statistics_hsp-len>
    314. 

  314.           <Statistics_eff-space>1672994000</Statistics_eff-space>
    315. 

  315.           <Statistics_kappa>0.041</Statistics_kappa>
    316. 

  316.           <Statistics_lambda>0.267</Statistics_lambda>
    317. 

  317.           <Statistics_entropy>0.14</Statistics_entropy>
    318. 

  318.         </Statistics>
    319. 

  319.       </Iteration_stat>
    320. 

  320.     </Iteration>
    321. 

  321.   </BlastOutput_iterations>
    322. 

  322. </BlastOutput>
    323.