/test-data/blastp_human_vs_pdb_seg_no.xml
XML | 322 lines | 322 code | 0 blank | 0 comment | 0 complexity | ae755717a30f27c656264117545e43ea MD5 | raw file
1<?xml version="1.0"?> 2<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> 3<BlastOutput> 4 <BlastOutput_program>blastp</BlastOutput_program> 5 <BlastOutput_version>BLASTP 2.2.24+</BlastOutput_version> 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> 7 <BlastOutput_db>/data/blastdb/pdbaa</BlastOutput_db> 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> 9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> 10 <BlastOutput_query-len>406</BlastOutput_query-len> 11 <BlastOutput_param> 12 <Parameters> 13 <Parameters_matrix>BLOSUM62</Parameters_matrix> 14 <Parameters_expect>1e-08</Parameters_expect> 15 <Parameters_gap-open>11</Parameters_gap-open> 16 <Parameters_gap-extend>1</Parameters_gap-extend> 17 <Parameters_filter>F</Parameters_filter> 18 </Parameters> 19 </BlastOutput_param> 20 <BlastOutput_iterations> 21 <Iteration> 22 <Iteration_iter-num>1</Iteration_iter-num> 23 <Iteration_query-ID>Query_1</Iteration_query-ID> 24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> 25 <Iteration_query-len>406</Iteration_query-len> 26 <Iteration_hits> 27 <Hit> 28 <Hit_num>1</Hit_num> 29 <Hit_id>gi|193885198|pdb|2R2J|A</Hit_id> 30 <Hit_def>Chain A, Crystal Structure Of Human Erp44</Hit_def> 31 <Hit_accession>2R2J_A</Hit_accession> 32 <Hit_len>382</Hit_len> 33 <Hit_hsps> 34 <Hsp> 35 <Hsp_num>1</Hsp_num> 36 <Hsp_bit-score>768.073791748238</Hsp_bit-score> 37 <Hsp_score>1982</Hsp_score> 38 <Hsp_evalue>0</Hsp_evalue> 39 <Hsp_query-from>26</Hsp_query-from> 40 <Hsp_query-to>406</Hsp_query-to> 41 <Hsp_hit-from>2</Hsp_hit-from> 42 <Hsp_hit-to>382</Hsp_hit-to> 43 <Hsp_query-frame>0</Hsp_query-frame> 44 <Hsp_hit-frame>0</Hsp_hit-frame> 45 <Hsp_identity>370</Hsp_identity> 46 <Hsp_positive>372</Hsp_positive> 47 <Hsp_gaps>0</Hsp_gaps> 48 <Hsp_align-len>381</Hsp_align-len> 49 <Hsp_qseq>PVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL</Hsp_qseq> 50 <Hsp_hseq>PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL</Hsp_hseq> 51 <Hsp_midline>P+ +EITSLDTENIDEILNNADVALVNFYADWCRFSQ LHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG KREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPD VYLGA TNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFH KEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRH YVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL</Hsp_midline> 52 </Hsp> 53 </Hit_hsps> 54 </Hit> 55 <Hit> 56 <Hit_num>2</Hit_num> 57 <Hit_id>gi|88192228|pdb|2B5E|A</Hit_id> 58 <Hit_def>Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase >gi|206581884|pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase.</Hit_def> 59 <Hit_accession>2B5E_A</Hit_accession> 60 <Hit_len>504</Hit_len> 61 <Hit_hsps> 62 <Hsp> 63 <Hsp_num>1</Hsp_num> 64 <Hsp_bit-score>95.130132620622</Hsp_bit-score> 65 <Hsp_score>235</Hsp_score> 66 <Hsp_evalue>4.15033135540548e-20</Hsp_evalue> 67 <Hsp_query-from>25</Hsp_query-from> 68 <Hsp_query-to>306</Hsp_query-to> 69 <Hsp_hit-from>10</Hsp_hit-from> 70 <Hsp_hit-to>283</Hsp_hit-to> 71 <Hsp_query-frame>0</Hsp_query-frame> 72 <Hsp_hit-frame>0</Hsp_hit-frame> 73 <Hsp_identity>73</Hsp_identity> 74 <Hsp_positive>133</Hsp_positive> 75 <Hsp_gaps>24</Hsp_gaps> 76 <Hsp_align-len>290</Hsp_align-len> 77 <Hsp_qseq>TPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNI---IYKPPGHSAPDMVYLGA---MTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF-RH</Hsp_qseq> 78 <Hsp_hseq>APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-----NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA--------ENADDDFKLSIYLPSAMDEP-VVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--NDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRH</Hsp_hseq> 79 <Hsp_midline> P + + L T++ +E + + D+ L F+A WC + + P + +A++ + E+ + A++DC ++ D+ + I +P+LK+F+N + +Y G R+ +A+ ++ +Q + + DL + +I + D+D F +AN +D F+SA + D+ IY P P +VY G + + DV W+Q + +P EI + E GLP LF+ D E LE ++ +G +NF+ D KF RH</Hsp_midline> 80 </Hsp> 81 </Hit_hsps> 82 </Hit> 83 </Iteration_hits> 84 <Iteration_stat> 85 <Statistics> 86 <Statistics_db-num>49615</Statistics_db-num> 87 <Statistics_db-len>11554246</Statistics_db-len> 88 <Statistics_hsp-len>0</Statistics_hsp-len> 89 <Statistics_eff-space>2039204827</Statistics_eff-space> 90 <Statistics_kappa>0.041</Statistics_kappa> 91 <Statistics_lambda>0.267</Statistics_lambda> 92 <Statistics_entropy>0.14</Statistics_entropy> 93 </Statistics> 94 </Iteration_stat> 95 </Iteration> 96 <Iteration> 97 <Iteration_iter-num>2</Iteration_iter-num> 98 <Iteration_query-ID>Query_2</Iteration_query-ID> 99 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> 100 <Iteration_query-len>1161</Iteration_query-len> 101 <Iteration_hits> 102 <Hit> 103 <Hit_num>1</Hit_num> 104 <Hit_id>gi|73536291|pdb|2BUJ|A</Hit_id> 105 <Hit_def>Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine >gi|73536292|pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine</Hit_def> 106 <Hit_accession>2BUJ_A</Hit_accession> 107 <Hit_len>317</Hit_len> 108 <Hit_hsps> 109 <Hsp> 110 <Hsp_num>1</Hsp_num> 111 <Hsp_bit-score>105.530521170391</Hsp_bit-score> 112 <Hsp_score>262</Hsp_score> 113 <Hsp_evalue>1.04156432658542e-22</Hsp_evalue> 114 <Hsp_query-from>40</Hsp_query-from> 115 <Hsp_query-to>308</Hsp_query-to> 116 <Hsp_hit-from>21</Hsp_hit-from> 117 <Hsp_hit-to>294</Hsp_hit-to> 118 <Hsp_query-frame>0</Hsp_query-frame> 119 <Hsp_hit-frame>0</Hsp_hit-frame> 120 <Hsp_identity>82</Hsp_identity> 121 <Hsp_positive>130</Hsp_positive> 122 <Hsp_gaps>15</Hsp_gaps> 123 <Hsp_align-len>279</Hsp_align-len> 124 <Hsp_qseq>GVRVFAVGRHQVTLEESLAEGGFSTVFLVR-THGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMNKKLQTG--FTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDG-VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPF------GESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDI</Hsp_qseq> 125 <Hsp_hseq>GHMVIIDNKHYLFIQK-LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREAD-MHRLFNHPNILRLVAYCLRERGAKH-EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH--AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI</Hsp_hseq> 126 <Hsp_midline>G V +H + +++ L EGGFS V LV H G ALKR+ + D +RE M L H NI+ + + E +L+ + + G + N++ + G TE ++L + C + +H HRDLK NILL D G VL D GS ++ + +++ + T+SYRAPE+ ++ I + D+W+LGC+LY + F P+ G+S +IP + R+S + L+ M+ DP RP I</Hsp_midline> 127 </Hsp> 128 </Hit_hsps> 129 </Hit> 130 <Hit> 131 <Hit_num>2</Hit_num> 132 <Hit_id>gi|270346335|pdb|2WQM|A</Hit_id> 133 <Hit_def>Chain A, Structure Of Apo Human Nek7 >gi|270346336|pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7</Hit_def> 134 <Hit_accession>2WQM_A</Hit_accession> 135 <Hit_len>310</Hit_len> 136 <Hit_hsps> 137 <Hsp> 138 <Hsp_num>1</Hsp_num> 139 <Hsp_bit-score>86.2705423745229</Hsp_bit-score> 140 <Hsp_score>212</Hsp_score> 141 <Hsp_evalue>6.48475818195287e-17</Hsp_evalue> 142 <Hsp_query-from>53</Hsp_query-from> 143 <Hsp_query-to>311</Hsp_query-to> 144 <Hsp_hit-from>36</Hsp_hit-from> 145 <Hsp_hit-to>288</Hsp_hit-to> 146 <Hsp_query-frame>0</Hsp_query-frame> 147 <Hsp_hit-frame>0</Hsp_hit-frame> 148 <Hsp_identity>74</Hsp_identity> 149 <Hsp_positive>129</Hsp_positive> 150 <Hsp_gaps>32</Hsp_gaps> 151 <Hsp_align-len>272</Hsp_align-len> 152 <Hsp_qseq>LEESLAEGGFSTVFLVRTH-GGIRCALKRMYVNNMPDLNV---CKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN--KKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQV---AICD----GNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQV</Hsp_qseq> 153 <Hsp_hseq>IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN-HPNVIKYY---ASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLG--LGRFFSSKTTAAHSL------VGTPYYMSPERIHENG---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV</Hsp_hseq> 154 <Hsp_midline>+E+ + G FS V+ G+ ALK++ + ++ D C +EI ++K+L+ H N++ Y + I DN E+ I++E AG + + KK + E V + F C A+ +H + ++HRD+K N+ + G L D G +F + + + + T Y +PE I+ G K+DIW+LGCLLY++ PF ++ ++C ++ + YS + L+ + PDPE RPD+ V</Hsp_midline> 155 </Hsp> 156 </Hit_hsps> 157 </Hit> 158 </Iteration_hits> 159 <Iteration_stat> 160 <Statistics> 161 <Statistics_db-num>49615</Statistics_db-num> 162 <Statistics_db-len>11554246</Statistics_db-len> 163 <Statistics_hsp-len>0</Statistics_hsp-len> 164 <Statistics_eff-space>6524204778</Statistics_eff-space> 165 <Statistics_kappa>0.041</Statistics_kappa> 166 <Statistics_lambda>0.267</Statistics_lambda> 167 <Statistics_entropy>0.14</Statistics_entropy> 168 </Statistics> 169 </Iteration_stat> 170 </Iteration> 171 <Iteration> 172 <Iteration_iter-num>3</Iteration_iter-num> 173 <Iteration_query-ID>Query_3</Iteration_query-ID> 174 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> 175 <Iteration_query-len>1382</Iteration_query-len> 176 <Iteration_hits> 177 <Hit> 178 <Hit_num>1</Hit_num> 179 <Hit_id>gi|116667097|pdb|2DTG|E</Hit_id> 180 <Hit_def>Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's</Hit_def> 181 <Hit_accession>2DTG_E</Hit_accession> 182 <Hit_len>897</Hit_len> 183 <Hit_hsps> 184 <Hsp> 185 <Hsp_num>1</Hsp_num> 186 <Hsp_bit-score>1846.24740474091</Hsp_bit-score> 187 <Hsp_score>4781</Hsp_score> 188 <Hsp_evalue>0</Hsp_evalue> 189 <Hsp_query-from>28</Hsp_query-from> 190 <Hsp_query-to>955</Hsp_query-to> 191 <Hsp_hit-from>1</Hsp_hit-from> 192 <Hsp_hit-to>897</Hsp_hit-to> 193 <Hsp_query-frame>0</Hsp_query-frame> 194 <Hsp_hit-frame>0</Hsp_hit-frame> 195 <Hsp_identity>890</Hsp_identity> 196 <Hsp_positive>893</Hsp_positive> 197 <Hsp_gaps>31</Hsp_gaps> 198 <Hsp_align-len>928</Hsp_align-len> 199 <Hsp_qseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA</Hsp_qseq> 200 <Hsp_hseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV------------PRPSRKRRSLGDVGNA-------------------GNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA</Hsp_hseq> 201 <Hsp_midline>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDN+IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV PRPSRKRRSLGDVGN + EEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLC +RKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA</Hsp_midline> 202 </Hsp> 203 </Hit_hsps> 204 </Hit> 205 <Hit> 206 <Hit_num>2</Hit_num> 207 <Hit_id>gi|114794482|pdb|2HR7|A</Hit_id> 208 <Hit_def>Chain A, Insulin Receptor (Domains 1-3) >gi|114794483|pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)</Hit_def> 209 <Hit_accession>2HR7_A</Hit_accession> 210 <Hit_len>486</Hit_len> 211 <Hit_hsps> 212 <Hsp> 213 <Hsp_num>1</Hsp_num> 214 <Hsp_bit-score>1016.91271779085</Hsp_bit-score> 215 <Hsp_score>2628</Hsp_score> 216 <Hsp_evalue>0</Hsp_evalue> 217 <Hsp_query-from>28</Hsp_query-from> 218 <Hsp_query-to>512</Hsp_query-to> 219 <Hsp_hit-from>1</Hsp_hit-from> 220 <Hsp_hit-to>485</Hsp_hit-to> 221 <Hsp_query-frame>0</Hsp_query-frame> 222 <Hsp_hit-frame>0</Hsp_hit-frame> 223 <Hsp_identity>483</Hsp_identity> 224 <Hsp_positive>485</Hsp_positive> 225 <Hsp_gaps>0</Hsp_gaps> 226 <Hsp_align-len>485</Hsp_align-len> 227 <Hsp_qseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKI</Hsp_qseq> 228 <Hsp_hseq>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI</Hsp_hseq> 229 <Hsp_midline>HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDN+IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGD+ASCENELLKFSYIRTSFDKI</Hsp_midline> 230 </Hsp> 231 </Hit_hsps> 232 </Hit> 233 </Iteration_hits> 234 <Iteration_stat> 235 <Statistics> 236 <Statistics_db-num>49615</Statistics_db-num> 237 <Statistics_db-len>11554246</Statistics_db-len> 238 <Statistics_hsp-len>0</Statistics_hsp-len> 239 <Statistics_eff-space>7824126603</Statistics_eff-space> 240 <Statistics_kappa>0.041</Statistics_kappa> 241 <Statistics_lambda>0.267</Statistics_lambda> 242 <Statistics_entropy>0.14</Statistics_entropy> 243 </Statistics> 244 </Iteration_stat> 245 </Iteration> 246 <Iteration> 247 <Iteration_iter-num>4</Iteration_iter-num> 248 <Iteration_query-ID>Query_4</Iteration_query-ID> 249 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> 250 <Iteration_query-len>348</Iteration_query-len> 251 <Iteration_hits> 252 <Hit> 253 <Hit_num>1</Hit_num> 254 <Hit_id>gi|16975387|pdb|1JFP|A</Hit_id> 255 <Hit_def>Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) >gi|22219255|pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii) >gi|157878065|pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form >gi|157878066|pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form >gi|157878298|pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin >gi|157878299|pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin >gi|157878979|pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution >gi|157878980|pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution >gi|157880263|pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution >gi|157880264|pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution >gi|157883606|pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin >gi|157883607|pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin >gi|157883830|pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin >gi|157883831|pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin >gi|157883860|pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of Ground- State Rhodopsin >gi|157883861|pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin >gi|157883862|pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin >gi|157883863|pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin >gi|157883864|pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin >gi|157883865|pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin >gi|157883866|pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin >gi|159795066|pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin >gi|159795067|pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin >gi|192988480|pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State >gi|192988481|pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State >gi|195927457|pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal Crystal Form >gi|197107530|pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin >gi|197107531|pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin >gi|206582030|pdb|3DQB|A Chain A, Crystal Structure Of The Active G-Protein-Coupled Receptor Opsin In Complex With A C-Terminal Peptide Derived From The Galpha Subunit Of Transducin</Hit_def> 256 <Hit_accession>1JFP_A</Hit_accession> 257 <Hit_len>348</Hit_len> 258 <Hit_hsps> 259 <Hsp> 260 <Hsp_num>1</Hsp_num> 261 <Hsp_bit-score>681.018687590916</Hsp_bit-score> 262 <Hsp_score>1756</Hsp_score> 263 <Hsp_evalue>0</Hsp_evalue> 264 <Hsp_query-from>1</Hsp_query-from> 265 <Hsp_query-to>348</Hsp_query-to> 266 <Hsp_hit-from>1</Hsp_hit-from> 267 <Hsp_hit-to>348</Hsp_hit-to> 268 <Hsp_query-frame>0</Hsp_query-frame> 269 <Hsp_hit-frame>0</Hsp_hit-frame> 270 <Hsp_identity>325</Hsp_identity> 271 <Hsp_positive>337</Hsp_positive> 272 <Hsp_gaps>0</Hsp_gaps> 273 <Hsp_align-len>348</Hsp_align-len> 274 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> 275 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> 276 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> 277 </Hsp> 278 </Hit_hsps> 279 </Hit> 280 <Hit> 281 <Hit_num>2</Hit_num> 282 <Hit_id>gi|195927458|pdb|3C9M|A</Hit_id> 283 <Hit_def>Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form</Hit_def> 284 <Hit_accession>3C9M_A</Hit_accession> 285 <Hit_len>348</Hit_len> 286 <Hit_hsps> 287 <Hsp> 288 <Hsp_num>1</Hsp_num> 289 <Hsp_bit-score>674.085095224404</Hsp_bit-score> 290 <Hsp_score>1738</Hsp_score> 291 <Hsp_evalue>0</Hsp_evalue> 292 <Hsp_query-from>1</Hsp_query-from> 293 <Hsp_query-to>348</Hsp_query-to> 294 <Hsp_hit-from>1</Hsp_hit-from> 295 <Hsp_hit-to>348</Hsp_hit-to> 296 <Hsp_query-frame>0</Hsp_query-frame> 297 <Hsp_hit-frame>0</Hsp_hit-frame> 298 <Hsp_identity>324</Hsp_identity> 299 <Hsp_positive>335</Hsp_positive> 300 <Hsp_gaps>0</Hsp_gaps> 301 <Hsp_align-len>348</Hsp_align-len> 302 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> 303 <Hsp_hseq>MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> 304 <Hsp_midline>M GTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> 305 </Hsp> 306 </Hit_hsps> 307 </Hit> 308 </Iteration_hits> 309 <Iteration_stat> 310 <Statistics> 311 <Statistics_db-num>49615</Statistics_db-num> 312 <Statistics_db-len>11554246</Statistics_db-len> 313 <Statistics_hsp-len>0</Statistics_hsp-len> 314 <Statistics_eff-space>1672994000</Statistics_eff-space> 315 <Statistics_kappa>0.041</Statistics_kappa> 316 <Statistics_lambda>0.267</Statistics_lambda> 317 <Statistics_entropy>0.14</Statistics_entropy> 318 </Statistics> 319 </Iteration_stat> 320 </Iteration> 321 </BlastOutput_iterations> 322</BlastOutput>