/test-data/samtools_flagstat_out1.txt

https://bitbucket.org/cistrome/cistrome-harvard/ · Plain Text · 12 lines · 12 code · 0 blank · 0 comment · 0 complexity · bc4e946996795f33a1ac639c9d3c6c4a MD5 · raw file 

    

  1. 10 in total
    2. 

  2. 0 QC failure
    3. 

  3. 0 duplicates
    4. 

  4. 10 mapped (100.00%)
    5. 

  5. 0 paired in sequencing
    6. 

  6. 0 read1
    7. 

  7. 0 read2
    8. 

  8. 0 properly paired (nan%)
    9. 

  9. 0 with itself and mate mapped
    10. 

  10. 0 singletons (nan%)
    11. 

  11. 0 with mate mapped to a different chr
    12. 

  12. 0 with mate mapped to a different chr (mapQ>=5)
    13.