/test-data/fastqc_report.html
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1<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN"> 2<html> 3<head><title>dataset_1.dat FastQC Report</title> 4 5<style type="text/css"> 6 7 @media screen { 8 div.summary { 9 width: 18em; 10 position:fixed; 11 top: 3em; 12 margin:1em 0 0 1em; 13 } 14 15 div.main { 16 display:block; 17 position:absolute; 18 overflow:auto; 19 height:auto; 20 width:auto; 21 top:4.5em; 22 bottom:2.3em; 23 left:18em; 24 right:0; 25 border-left: 1px solid #CCC; 26 padding:0 0 0 1em; 27 background-color: white; 28 z-index:1; 29 } 30 31 div.header { 32 background-color: #EEE; 33 border:0; 34 margin:0; 35 padding: 0.5em; 36 font-size: 200%; 37 font-weight: bold; 38 position:fixed; 39 width:100%; 40 top:0; 41 left:0; 42 z-index:2; 43 } 44 45 div.footer { 46 background-color: #EEE; 47 border:0; 48 margin:0; 49 padding:0.5em; 50 height: 1.3em; 51 overflow:hidden; 52 font-size: 100%; 53 font-weight: bold; 54 position:fixed; 55 bottom:0; 56 width:100%; 57 z-index:2; 58 } 59 60 img.indented { 61 margin-left: 3em; 62 } 63 } 64 65 @media print { 66 img { 67 max-width:100% !important; 68 page-break-inside: avoid; 69 } 70 h2, h3 { 71 page-break-after: avoid; 72 } 73 div.header { 74 background-color: #FFF; 75 } 76 77 } 78 79 body { 80 font-family: sans-serif; 81 color: #000; 82 background-color: #FFF; 83 border: 0; 84 margin: 0; 85 padding: 0; 86 } 87 88 div.header { 89 border:0; 90 margin:0; 91 padding: 0.5em; 92 font-size: 200%; 93 font-weight: bold; 94 width:100%; 95 } 96 97 #header_title { 98 display:inline-block; 99 float:left; 100 clear:left; 101 } 102 #header_filename { 103 display:inline-block; 104 float:right; 105 clear:right; 106 font-size: 50%; 107 margin-right:2em; 108 text-align: right; 109 } 110 111 div.header h3 { 112 font-size: 50%; 113 margin-bottom: 0; 114 } 115 116 div.summary ul { 117 padding-left:0; 118 list-style-type:none; 119 } 120 121 div.summary ul li img { 122 margin-bottom:-0.5em; 123 margin-top:0.5em; 124 } 125 126 div.main { 127 background-color: white; 128 } 129 130 div.module { 131 padding-bottom:1.5em; 132 padding-top:1.5em; 133 } 134 135 div.footer { 136 background-color: #EEE; 137 border:0; 138 margin:0; 139 padding: 0.5em; 140 font-size: 100%; 141 font-weight: bold; 142 width:100%; 143 } 144 145 146 a { 147 color: #000080; 148 } 149 150 a:hover { 151 color: #800000; 152 } 153 154 h2 { 155 color: #800000; 156 padding-bottom: 0; 157 margin-bottom: 0; 158 clear:left; 159 } 160 161 table { 162 margin-left: 3em; 163 text-align: center; 164 } 165 166 th { 167 text-align: center; 168 background-color: #000080; 169 color: #FFF; 170 padding: 0.4em; 171 } 172 173 td { 174 font-family: monospace; 175 text-align: left; 176 background-color: #EEE; 177 color: #000; 178 padding: 0.4em; 179 } 180 181 img { 182 padding-top: 0; 183 margin-top: 0; 184 border-top: 0; 185 } 186 187 188 p { 189 padding-top: 0; 190 margin-top: 0; 191 } 192 193</style> 194 195</head> 196<body> 197<div class="header"> 198<div id="header_title"><img src="fastqc_icon.png" alt="FastQC">FastQC Report</div> 199<div id="header_filename"> 200Wed 16 Nov 2011<br /> 201dataset_1.dat 202</div> 203</div> 204<div class="summary"> 205<h2>Summary</h2> 206<ul> 207<li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li> 208<li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li> 209<li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li> 210<li><img src="warning.png" alt="[WARNING]"> <a href="#M3">Per base sequence content</a></li> 211<li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li> 212<li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li> 213<li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li> 214<li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li> 215<li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li> 216<li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li> 217<li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li> 218</ul> 219</div> 220<div class="main"> 221<div class="module"><h2 id="M0"><img src="tick.png" alt="[OK]"> Basic Statistics</h2> 222<table> 223<tr> 224<th>Measure</th> 225<th>Value</th> 226</tr> 227<tr> 228<td>Filename</td> 229<td>dataset_1.dat</td> 230</tr> 231<tr> 232<td>File type</td> 233<td>Conventional base calls</td> 234</tr> 235<tr> 236<td>Encoding</td> 237<td>Sanger / Illumina 1.9</td> 238</tr> 239<tr> 240<td>Total Sequences</td> 241<td>5000</td> 242</tr> 243<tr> 244<td>Filtered Sequences</td> 245<td>0</td> 246</tr> 247<tr> 248<td>Sequence length</td> 249<td>54</td> 250</tr> 251<tr> 252<td>%GC</td> 253<td>43</td> 254</tr> 255</table> 256</div> 257<div class="module"><h2 id="M1"><img src="warning.png" alt="[WARN]"> Per base sequence quality</h2> 258<p><img class="indented" src="per_base_quality.png" alt="Per base quality graph"></p> 259</div> 260<div class="module"><h2 id="M2"><img src="warning.png" alt="[WARN]"> Per sequence quality scores</h2> 261<p><img class="indented" src="per_sequence_quality.png" alt="Per Sequence quality graph"></p> 262</div> 263<div class="module"><h2 id="M3"><img src="warning.png" alt="[WARN]"> Per base sequence content</h2> 264<p><img class="indented" src="per_base_sequence_content.png" alt="Per base sequence content"></p> 265</div> 266<div class="module"><h2 id="M4"><img src="tick.png" alt="[OK]"> Per base GC content</h2> 267<p><img class="indented" src="per_base_gc_content.png" alt="Per base GC content graph"></p> 268</div> 269<div class="module"><h2 id="M5"><img src="warning.png" alt="[WARN]"> Per sequence GC content</h2> 270<p><img class="indented" src="per_sequence_gc_content.png" alt="Per sequence GC content graph"></p> 271</div> 272<div class="module"><h2 id="M6"><img src="tick.png" alt="[OK]"> Per base N content</h2> 273<p><img class="indented" src="per_base_n_content.png" alt="N content graph"></p> 274</div> 275<div class="module"><h2 id="M7"><img src="tick.png" alt="[OK]"> Sequence Length Distribution</h2> 276<p><img class="indented" src="sequence_length_distribution.png" alt="Sequence length distribution"></p> 277</div> 278<div class="module"><h2 id="M8"><img src="tick.png" alt="[OK]"> Sequence Duplication Levels</h2> 279<p><img class="indented" src="duplication_levels.png" alt="Duplication level graph"></p> 280</div> 281<div class="module"><h2 id="M9"><img src="warning.png" alt="[WARN]"> Overrepresented sequences</h2> 282<table> 283<tr> 284<th>Sequence</th> 285<th>Count</th> 286<th>Percentage</th> 287<th>Possible Source</th> 288</tr> 289<tr> 290<td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td> 291<td>7</td> 292<td>0.13999999999999999</td> 293<td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td> 294</tr> 295<tr> 296<td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td> 297<td>7</td> 298<td>0.13999999999999999</td> 299<td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td> 300</tr> 301</table> 302</div> 303<div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2> 304<p><img class="indented" src="kmer_profiles.png" alt="Kmer graph"></p> 305<table> 306<tr> 307<th>Sequence</th> 308<th>Count</th> 309<th>Obs/Exp Overall</th> 310<th>Obs/Exp Max</th> 311<th>Max Obs/Exp Position</th> 312</tr> 313<tr> 314<td>CCCCC</td> 315<td>1180</td> 316<td>9.957459</td> 317<td>29.638031</td> 318<td>50</td> 319</tr> 320<tr> 321<td>AAAAA</td> 322<td>2175</td> 323<td>4.133217</td> 324<td>7.129659</td> 325<td>47</td> 326</tr> 327<tr> 328<td>CTCCC</td> 329<td>555</td> 330<td>3.668942</td> 331<td>11.56272</td> 332<td>11</td> 333</tr> 334<tr> 335<td>CCTCC</td> 336<td>525</td> 337<td>3.4706206</td> 338<td>11.56272</td> 339<td>14</td> 340</tr> 341<tr> 342<td>CTGGG</td> 343<td>465</td> 344<td>3.0945942</td> 345<td>8.331139</td> 346<td>39</td> 347</tr> 348<tr> 349<td>GGGGG</td> 350<td>350</td> 351<td>2.9865708</td> 352<td>12.818572</td> 353<td>41</td> 354</tr> 355<tr> 356<td>TGGAA</td> 357<td>800</td> 358<td>2.9261596</td> 359<td>6.397646</td> 360<td>17</td> 361</tr> 362<tr> 363<td>CCCAG</td> 364<td>455</td> 365<td>2.855999</td> 366<td>9.429343</td> 367<td>40</td> 368</tr> 369<tr> 370<td>GAATG</td> 371<td>775</td> 372<td>2.8347175</td> 373<td>10.053445</td> 374<td>20</td> 375</tr> 376<tr> 377<td>GTGTG</td> 378<td>530</td> 379<td>2.763172</td> 380<td>7.8240557</td> 381<td>33</td> 382</tr> 383<tr> 384<td>GGGAG</td> 385<td>435</td> 386<td>2.7487729</td> 387<td>6.3220544</td> 388<td>43</td> 389</tr> 390<tr> 391<td>TGTGT</td> 392<td>670</td> 393<td>2.7303638</td> 394<td>6.109576</td> 395<td>27</td> 396</tr> 397<tr> 398<td>ATGGA</td> 399<td>735</td> 400<td>2.688409</td> 401<td>6.397646</td> 402<td>20</td> 403</tr> 404<tr> 405<td>GGAAT</td> 406<td>730</td> 407<td>2.6701207</td> 408<td>7.3115954</td> 409<td>19</td> 410</tr> 411<tr> 412<td>GCTGG</td> 413<td>400</td> 414<td>2.6620166</td> 415<td>8.322799</td> 416<td>31</td> 417</tr> 418<tr> 419<td>GGAGG</td> 420<td>420</td> 421<td>2.6539874</td> 422<td>7.9104857</td> 423<td>40</td> 424</tr> 425<tr> 426<td>GCAGG</td> 427<td>405</td> 428<td>2.5535064</td> 429<td>14.17877</td> 430<td>16</td> 431</tr> 432<tr> 433<td>CCTGG</td> 434<td>375</td> 435<td>2.4900866</td> 436<td>6.6367774</td> 437<td>7</td> 438</tr> 439<tr> 440<td>CAGCC</td> 441<td>390</td> 442<td>2.4479992</td> 443<td>6.279937</td> 444<td>38</td> 445</tr> 446<tr> 447<td>GGCTG</td> 448<td>365</td> 449<td>2.4290898</td> 450<td>9.97737</td> 451<td>24</td> 452</tr> 453<tr> 454<td>TGGGA</td> 455<td>490</td> 456<td>2.4202447</td> 457<td>7.40506</td> 458<td>20</td> 459</tr> 460<tr> 461<td>CCAGC</td> 462<td>385</td> 463<td>2.4166145</td> 464<td>6.286229</td> 465<td>41</td> 466</tr> 467<tr> 468<td>AATGG</td> 469<td>660</td> 470<td>2.4140818</td> 471<td>5.4836965</td> 472<td>18</td> 473</tr> 474<tr> 475<td>GCCTG</td> 476<td>360</td> 477<td>2.3904827</td> 478<td>8.295971</td> 479<td>5</td> 480</tr> 481<tr> 482<td>GCCTC</td> 483<td>360</td> 484<td>2.3851626</td> 485<td>6.6286345</td> 486<td>31</td> 487</tr> 488<tr> 489<td>CCCTC</td> 490<td>360</td> 491<td>2.379854</td> 492<td>8.267352</td> 493<td>34</td> 494</tr> 495<tr> 496<td>CTGTG</td> 497<td>450</td> 498<td>2.3408678</td> 499<td>9.09864</td> 500<td>44</td> 501</tr> 502<tr> 503<td>GGAAG</td> 504<td>500</td> 505<td>2.3397229</td> 506<td>14.031037</td> 507<td>2</td> 508</tr> 509<tr> 510<td>CAGCA</td> 511<td>500</td> 512<td>2.32932</td> 513<td>10.47649</td> 514<td>14</td> 515</tr> 516<tr> 517<td>CAGGA</td> 518<td>495</td> 519<td>2.3111706</td> 520<td>13.99981</td> 521<td>17</td> 522</tr> 523<tr> 524<td>TCCCA</td> 525<td>470</td> 526<td>2.305994</td> 527<td>7.370469</td> 528<td>39</td> 529</tr> 530<tr> 531<td>CTGCC</td> 532<td>345</td> 533<td>2.285781</td> 534<td>8.277508</td> 535<td>10</td> 536</tr> 537<tr> 538<td>GGTGG</td> 539<td>340</td> 540<td>2.2677608</td> 541<td>5.009832</td> 542<td>42</td> 543</tr> 544<tr> 545<td>CCAGG</td> 546<td>360</td> 547<td>2.264732</td> 548<td>6.300251</td> 549<td>41</td> 550</tr> 551<tr> 552<td>TTCCT</td> 553<td>555</td> 554<td>2.2516627</td> 555<td>7.0961456</td> 556<td>1</td> 557</tr> 558<tr> 559<td>TCCCC</td> 560<td>335</td> 561<td>2.2145865</td> 562<td>8.267353</td> 563<td>29</td> 564</tr> 565<tr> 566<td>CAGGC</td> 567<td>350</td> 568<td>2.2018228</td> 569<td>6.300251</td> 570<td>42</td> 571</tr> 572<tr> 573<td>CTCCT</td> 574<td>425</td> 575<td>2.2009897</td> 576<td>6.4701333</td> 577<td>15</td> 578</tr> 579<tr> 580<td>GGCAG</td> 581<td>340</td> 582<td>2.1436844</td> 583<td>6.301676</td> 584<td>16</td> 585</tr> 586<tr> 587<td>CCCCA</td> 588<td>340</td> 589<td>2.129403</td> 590<td>6.26596</td> 591<td>31</td> 592</tr> 593<tr> 594<td>CTCTG</td> 595<td>410</td> 596<td>2.1280441</td> 597<td>5.1928453</td> 598<td>48</td> 599</tr> 600<tr> 601<td>TGGTG</td> 602<td>405</td> 603<td>2.1114805</td> 604<td>6.520046</td> 605<td>33</td> 606</tr> 607<tr> 608<td>TTCCA</td> 609<td>545</td> 610<td>2.094778</td> 611<td>6.7295837</td> 612<td>33</td> 613</tr> 614<tr> 615<td>CCCCT</td> 616<td>315</td> 617<td>2.0823722</td> 618<td>6.607268</td> 619<td>12</td> 620</tr> 621<tr> 622<td>CTCAG</td> 623<td>420</td> 624<td>2.0652719</td> 625<td>6.149596</td> 626<td>46</td> 627</tr> 628<tr> 629<td>AGGGA</td> 630<td>440</td> 631<td>2.0589561</td> 632<td>7.0225415</td> 633<td>31</td> 634</tr> 635<tr> 636<td>CAGAG</td> 637<td>440</td> 638<td>2.054374</td> 639<td>5.8390937</td> 640<td>38</td> 641</tr> 642<tr> 643<td>AGCAG</td> 644<td>440</td> 645<td>2.0543735</td> 646<td>10.499857</td> 647<td>15</td> 648</tr> 649<tr> 650<td>CCCTG</td> 651<td>310</td> 652<td>2.05389</td> 653<td>6.622006</td> 654<td>24</td> 655</tr> 656<tr> 657<td>CTTCC</td> 658<td>390</td> 659<td>2.0197318</td> 660<td>6.4701333</td> 661<td>17</td> 662</tr> 663<tr> 664<td>AGGAA</td> 665<td>580</td> 666<td>2.0098667</td> 667<td>10.390455</td> 668<td>18</td> 669</tr> 670<tr> 671<td>AGAGC</td> 672<td>430</td> 673<td>2.0076835</td> 674<td>10.499858</td> 675<td>5</td> 676</tr> 677<tr> 678<td>TCTCC</td> 679<td>385</td> 680<td>1.9938378</td> 681<td>5.181288</td> 682<td>29</td> 683</tr> 684<tr> 685<td>TCCTC</td> 686<td>385</td> 687<td>1.9938378</td> 688<td>5.181288</td> 689<td>48</td> 690</tr> 691<tr> 692<td>TCAGC</td> 693<td>405</td> 694<td>1.9915122</td> 695<td>12.286894</td> 696<td>44</td> 697</tr> 698<tr> 699<td>TGCTG</td> 700<td>380</td> 701<td>1.9767327</td> 702<td>6.5055346</td> 703<td>47</td> 704</tr> 705<tr> 706<td>CACCC</td> 707<td>315</td> 708<td>1.9728295</td> 709<td>6.259694</td> 710<td>9</td> 711</tr> 712<tr> 713<td>TCCTG</td> 714<td>380</td> 715<td>1.9723336</td> 716<td>6.4845653</td> 717<td>8</td> 718</tr> 719<tr> 720<td>CAGGG</td> 721<td>310</td> 722<td>1.954536</td> 723<td>6.3016763</td> 724<td>21</td> 725</tr> 726<tr> 727<td>GATGG</td> 728<td>395</td> 729<td>1.9510134</td> 730<td>6.1708827</td> 731<td>1</td> 732</tr> 733<tr> 734<td>TGGCT</td> 735<td>375</td> 736<td>1.9507233</td> 737<td>9.098641</td> 738<td>45</td> 739</tr> 740<tr> 741<td>AAGAG</td> 742<td>560</td> 743<td>1.9405607</td> 744<td>9.524584</td> 745<td>4</td> 746</tr> 747<tr> 748<td>TGTGG</td> 749<td>370</td> 750<td>1.929007</td> 751<td>6.5200467</td> 752<td>30</td> 753</tr> 754<tr> 755<td>CTGAG</td> 756<td>390</td> 757<td>1.9220302</td> 758<td>6.163313</td> 759<td>35</td> 760</tr> 761<tr> 762<td>CCTGT</td> 763<td>370</td> 764<td>1.9204301</td> 765<td>6.4845653</td> 766<td>6</td> 767</tr> 768<tr> 769<td>CAGAA</td> 770<td>555</td> 771<td>1.9189543</td> 772<td>6.0476103</td> 773<td>6</td> 774</tr> 775<tr> 776<td>TCCCT</td> 777<td>370</td> 778<td>1.9161558</td> 779<td>6.4766097</td> 780<td>33</td> 781</tr> 782<tr> 783<td>CCCAC</td> 784<td>305</td> 785<td>1.9101999</td> 786<td>6.259694</td> 787<td>4</td> 788</tr> 789<tr> 790<td>CACCA</td> 791<td>405</td> 792<td>1.8825499</td> 793<td>6.9757566</td> 794<td>33</td> 795</tr> 796<tr> 797<td>AAAGA</td> 798<td>730</td> 799<td>1.8732982</td> 800<td>5.1399345</td> 801<td>42</td> 802</tr> 803<tr> 804<td>CAGTG</td> 805<td>380</td> 806<td>1.8727474</td> 807<td>6.163313</td> 808<td>30</td> 809</tr> 810<tr> 811<td>GAAGA</td> 812<td>540</td> 813<td>1.8712552</td> 814<td>7.792842</td> 815<td>26</td> 816</tr> 817<tr> 818<td>TCTCT</td> 819<td>460</td> 820<td>1.8662432</td> 821<td>5.068676</td> 822<td>8</td> 823</tr> 824<tr> 825<td>TTTCC</td> 826<td>460</td> 827<td>1.8662429</td> 828<td>5.073749</td> 829<td>38</td> 830</tr> 831<tr> 832<td>GAGGC</td> 833<td>295</td> 834<td>1.8599615</td> 835<td>6.301676</td> 836<td>22</td> 837</tr> 838<tr> 839<td>TCTGT</td> 840<td>455</td> 841<td>1.8500755</td> 842<td>5.0850673</td> 843<td>49</td> 844</tr> 845<tr> 846<td>CCTGC</td> 847<td>275</td> 848<td>1.8219992</td> 849<td>9.93301</td> 850<td>6</td> 851</tr> 852<tr> 853<td>CCTCT</td> 854<td>350</td> 855<td>1.8125799</td> 856<td>7.7641597</td> 857<td>2</td> 858</tr> 859<tr> 860<td>TGCCT</td> 861<td>345</td> 862<td>1.7906713</td> 863<td>5.187652</td> 864<td>12</td> 865</tr> 866<tr> 867<td>TTCCC</td> 868<td>345</td> 869<td>1.7866857</td> 870<td>6.470133</td> 871<td>18</td> 872</tr> 873<tr> 874<td>GAGGG</td> 875<td>280</td> 876<td>1.769325</td> 877<td>6.3283887</td> 878<td>41</td> 879</tr> 880<tr> 881<td>CACAC</td> 882<td>380</td> 883<td>1.7663432</td> 884<td>5.813131</td> 885<td>33</td> 886</tr> 887<tr> 888<td>TCTGC</td> 889<td>340</td> 890<td>1.7647195</td> 891<td>5.1980486</td> 892<td>42</td> 893</tr> 894<tr> 895<td>CTGGC</td> 896<td>265</td> 897<td>1.7596608</td> 898<td>6.6434207</td> 899<td>43</td> 900</tr> 901<tr> 902<td>TTCAG</td> 903<td>455</td> 904<td>1.7527524</td> 905<td>9.6255</td> 906<td>12</td> 907</tr> 908<tr> 909<td>AGCCA</td> 910<td>375</td> 911<td>1.74699</td> 912<td>5.8319354</td> 913<td>39</td> 914</tr> 915<tr> 916<td>CTCTC</td> 917<td>335</td> 918<td>1.7348979</td> 919<td>5.1761065</td> 920<td>3</td> 921</tr> 922<tr> 923<td>GGGTG</td> 924<td>260</td> 925<td>1.7341703</td> 926<td>8.333022</td> 927<td>28</td> 928</tr> 929<tr> 930<td>TGGGG</td> 931<td>260</td> 932<td>1.7341703</td> 933<td>8.349721</td> 934<td>39</td> 935</tr> 936<tr> 937<td>GTGGG</td> 938<td>255</td> 939<td>1.7008208</td> 940<td>6.6730905</td> 941<td>31</td> 942</tr> 943<tr> 944<td>GGCCA</td> 945<td>270</td> 946<td>1.698549</td> 947<td>6.293945</td> 948<td>43</td> 949</tr> 950<tr> 951<td>GCCCC</td> 952<td>200</td> 953<td>1.6914694</td> 954<td>6.3460584</td> 955<td>32</td> 956</tr> 957<tr> 958<td>CTTTG</td> 959<td>415</td> 960<td>1.6874313</td> 961<td>5.0799813</td> 962<td>2</td> 963</tr> 964<tr> 965<td>ACACA</td> 966<td>485</td> 967<td>1.6731915</td> 968<td>5.1721287</td> 969<td>14</td> 970</tr> 971<tr> 972<td>GTGGT</td> 973<td>320</td> 974<td>1.6683302</td> 975<td>5.216037</td> 976<td>31</td> 977</tr> 978<tr> 979<td>CTCAC</td> 980<td>340</td> 981<td>1.6681659</td> 982<td>7.363092</td> 983<td>31</td> 984</tr> 985<tr> 986<td>TGCTT</td> 987<td>410</td> 988<td>1.6671008</td> 989<td>5.090162</td> 990<td>40</td> 991</tr> 992<tr> 993<td>GGGGC</td> 994<td>195</td> 995<td>1.6602434</td> 996<td>8.526694</td> 997<td>40</td> 998</tr> 999<tr> 1000<td>AGTGG</td> 1001<td>335</td> 1002<td>1.654657</td> 1003<td>6.1708827</td> 1004<td>3</td> 1005</tr> 1006<tr> 1007<td>TTCTG</td> 1008<td>405</td> 1009<td>1.6467704</td> 1010<td>5.0850663</td> 1011<td>49</td> 1012</tr> 1013<tr> 1014<td>AGAAG</td> 1015<td>475</td> 1016<td>1.6460115</td> 1017<td>5.1952276</td> 1018<td>22</td> 1019</tr> 1020<tr> 1021<td>ACTCC</td> 1022<td>335</td> 1023<td>1.6436341</td> 1024<td>6.1297736</td> 1025<td>10</td> 1026</tr> 1027<tr> 1028<td>GGCTC</td> 1029<td>245</td> 1030<td>1.6268562</td> 1031<td>8.304275</td> 1032<td>46</td> 1033</tr> 1034<tr> 1035<td>TGGCA</td> 1036<td>330</td> 1037<td>1.6263331</td> 1038<td>8.637284</td> 1039<td>40</td> 1040</tr> 1041<tr> 1042<td>TCCTT</td> 1043<td>400</td> 1044<td>1.6228201</td> 1045<td>6.0946</td> 1046<td>40</td> 1047</tr> 1048<tr> 1049<td>TCTGG</td> 1050<td>310</td> 1051<td>1.612598</td> 1052<td>5.204428</td> 1053<td>43</td> 1054</tr> 1055<tr> 1056<td>GGGGA</td> 1057<td>255</td> 1058<td>1.6113497</td> 1059<td>6.3157325</td> 1060<td>7</td> 1061</tr> 1062<tr> 1063<td>CTGCT</td> 1064<td>310</td> 1065<td>1.609009</td> 1066<td>6.4845653</td> 1067<td>3</td> 1068</tr> 1069<tr> 1070<td>CCCAA</td> 1071<td>345</td> 1072<td>1.6036536</td> 1073<td>5.8073177</td> 1074<td>10</td> 1075</tr> 1076<tr> 1077<td>TGGCC</td> 1078<td>240</td> 1079<td>1.5936551</td> 1080<td>6.6434207</td> 1081<td>49</td> 1082</tr> 1083<tr> 1084<td>GTGCT</td> 1085<td>305</td> 1086<td>1.5865883</td> 1087<td>5.220104</td> 1088<td>50</td> 1089</tr> 1090<tr> 1091<td>GCTTT</td> 1092<td>390</td> 1093<td>1.5857788</td> 1094<td>6.1081944</td> 1095<td>41</td> 1096</tr> 1097<tr> 1098<td>CCACA</td> 1099<td>335</td> 1100<td>1.5571709</td> 1101<td>5.813131</td> 1102<td>30</td> 1103</tr> 1104<tr> 1105<td>CCTTC</td> 1106<td>300</td> 1107<td>1.5536399</td> 1108<td>6.4701333</td> 1109<td>17</td> 1110</tr> 1111<tr> 1112<td>CCACT</td> 1113<td>315</td> 1114<td>1.5455065</td> 1115<td>6.135909</td> 1116<td>32</td> 1117</tr> 1118<tr> 1119<td>TCTTC</td> 1120<td>380</td> 1121<td>1.5416791</td> 1122<td>5.0737495</td> 1123<td>49</td> 1124</tr> 1125<tr> 1126<td>GTTCA</td> 1127<td>400</td> 1128<td>1.5408814</td> 1129<td>7.700401</td> 1130<td>11</td> 1131</tr> 1132<tr> 1133<td>AGGCA</td> 1134<td>330</td> 1135<td>1.5407803</td> 1136<td>5.8332543</td> 1137<td>6</td> 1138</tr> 1139<tr> 1140<td>AAAAG</td> 1141<td>600</td> 1142<td>1.5396972</td> 1143<td>5.782427</td> 1144<td>41</td> 1145</tr> 1146<tr> 1147<td>GCACA</td> 1148<td>330</td> 1149<td>1.5373511</td> 1150<td>5.8202715</td> 1151<td>18</td> 1152</tr> 1153<tr> 1154<td>ATGCC</td> 1155<td>305</td> 1156<td>1.4997808</td> 1157<td>12.286893</td> 1158<td>22</td> 1159</tr> 1160<tr> 1161<td>GAAGG</td> 1162<td>320</td> 1163<td>1.4974226</td> 1164<td>5.8462653</td> 1165<td>8</td> 1166</tr> 1167<tr> 1168<td>GAGAG</td> 1169<td>320</td> 1170<td>1.4974226</td> 1171<td>5.857981</td> 1172<td>41</td> 1173</tr> 1174<tr> 1175<td>TGTGC</td> 1176<td>285</td> 1177<td>1.4825499</td> 1178<td>5.2044287</td> 1179<td>29</td> 1180</tr> 1181<tr> 1182<td>TTGGC</td> 1183<td>285</td> 1184<td>1.4825495</td> 1185<td>5.199223</td> 1186<td>15</td> 1187</tr> 1188<tr> 1189<td>GGGAT</td> 1190<td>300</td> 1191<td>1.4817826</td> 1192<td>7.40506</td> 1193<td>21</td> 1194</tr> 1195<tr> 1196<td>AGCTG</td> 1197<td>300</td> 1198<td>1.4784846</td> 1199<td>6.1633124</td> 1200<td>30</td> 1201</tr> 1202<tr> 1203<td>AACAG</td> 1204<td>425</td> 1205<td>1.4694693</td> 1206<td>5.1836653</td> 1207<td>10</td> 1208</tr> 1209<tr> 1210<td>GAGTG</td> 1211<td>295</td> 1212<td>1.4570862</td> 1213<td>6.1770606</td> 1214<td>33</td> 1215</tr> 1216<tr> 1217<td>GGGAC</td> 1218<td>230</td> 1219<td>1.4501395</td> 1220<td>6.3143044</td> 1221<td>40</td> 1222</tr> 1223<tr> 1224<td>GTGTT</td> 1225<td>355</td> 1226<td>1.4466851</td> 1227<td>6.134112</td> 1228<td>50</td> 1229</tr> 1230<tr> 1231<td>TTTGG</td> 1232<td>355</td> 1233<td>1.4466851</td> 1234<td>6.1095753</td> 1235<td>3</td> 1236</tr> 1237<tr> 1238<td>TCTTT</td> 1239<td>455</td> 1240<td>1.4461157</td> 1241<td>5.5590916</td> 1242<td>1</td> 1243</tr> 1244<tr> 1245<td>GAGAT</td> 1246<td>395</td> 1247<td>1.4447913</td> 1248<td>6.397646</td> 1249<td>27</td> 1250</tr> 1251<tr> 1252<td>CAAAA</td> 1253<td>560</td> 1254<td>1.4338523</td> 1255<td>5.123362</td> 1256<td>31</td> 1257</tr> 1258<tr> 1259<td>GGTTC</td> 1260<td>275</td> 1261<td>1.4305303</td> 1262<td>10.398446</td> 1263<td>10</td> 1264</tr> 1265<tr> 1266<td>CCCTT</td> 1267<td>275</td> 1268<td>1.4241698</td> 1269<td>5.186479</td> 1270<td>39</td> 1271</tr> 1272<tr> 1273<td>CTGTT</td> 1274<td>350</td> 1275<td>1.4231348</td> 1276<td>5.0799813</td> 1277<td>10</td> 1278</tr> 1279<tr> 1280<td>ATGGT</td> 1281<td>365</td> 1282<td>1.4091904</td> 1283<td>6.7596393</td> 1284<td>47</td> 1285</tr> 1286<tr> 1287<td>TGTTG</td> 1288<td>345</td> 1289<td>1.4059336</td> 1290<td>5.1015162</td> 1291<td>40</td> 1292</tr> 1293<tr> 1294<td>CTGTC</td> 1295<td>270</td> 1296<td>1.4013947</td> 1297<td>5.198048</td> 1298<td>39</td> 1299</tr> 1300<tr> 1301<td>GAGAC</td> 1302<td>300</td> 1303<td>1.4007094</td> 1304<td>5.856681</td> 1305<td>50</td> 1306</tr> 1307<tr> 1308<td>CTTCT</td> 1309<td>345</td> 1310<td>1.3996824</td> 1311<td>7.1246448</td> 1312<td>50</td> 1313</tr> 1314<tr> 1315<td>GGCCC</td> 1316<td>165</td> 1317<td>1.398575</td> 1318<td>6.353853</td> 1319<td>2</td> 1320</tr> 1321<tr> 1322<td>TGAGT</td> 1323<td>360</td> 1324<td>1.3898867</td> 1325<td>5.7939773</td> 1326<td>32</td> 1327</tr> 1328<tr> 1329<td>GGCAC</td> 1330<td>220</td> 1331<td>1.3840029</td> 1332<td>6.2876506</td> 1333<td>17</td> 1334</tr> 1335<tr> 1336<td>CCTTT</td> 1337<td>340</td> 1338<td>1.3793972</td> 1339<td>5.068676</td> 1340<td>8</td> 1341</tr> 1342<tr> 1343<td>CCTTG</td> 1344<td>265</td> 1345<td>1.3754432</td> 1346<td>5.187652</td> 1347<td>18</td> 1348</tr> 1349<tr> 1350<td>TTGAA</td> 1351<td>475</td> 1352<td>1.3580486</td> 1353<td>6.4295163</td> 1354<td>7</td> 1355</tr> 1356<tr> 1357<td>GAGCG</td> 1358<td>215</td> 1359<td>1.3555653</td> 1360<td>12.603353</td> 1361<td>6</td> 1362</tr> 1363<tr> 1364<td>AAGGA</td> 1365<td>390</td> 1366<td>1.3514621</td> 1367<td>5.1952276</td> 1368<td>44</td> 1369</tr> 1370<tr> 1371<td>TTCTT</td> 1372<td>420</td> 1373<td>1.3348758</td> 1374<td>7.941558</td> 1375<td>4</td> 1376</tr> 1377<tr> 1378<td>GGGGT</td> 1379<td>200</td> 1380<td>1.3339773</td> 1381<td>8.333022</td> 1382<td>45</td> 1383</tr> 1384<tr> 1385<td>CAGAT</td> 1386<td>365</td> 1387<td>1.3320893</td> 1388<td>5.4769697</td> 1389<td>34</td> 1390</tr> 1391<tr> 1392<td>CTTGG</td> 1393<td>255</td> 1394<td>1.3264918</td> 1395<td>5.1992235</td> 1396<td>18</td> 1397</tr> 1398<tr> 1399<td>TGGTT</td> 1400<td>320</td> 1401<td>1.3040541</td> 1402<td>5.091313</td> 1403<td>25</td> 1404</tr> 1405<tr> 1406<td>TTGGG</td> 1407<td>250</td> 1408<td>1.3033829</td> 1409<td>6.5135255</td> 1410<td>6</td> 1411</tr> 1412<tr> 1413<td>CTGGT</td> 1414<td>250</td> 1415<td>1.3004823</td> 1416<td>5.204428</td> 1417<td>48</td> 1418</tr> 1419<tr> 1420<td>GCTCC</td> 1421<td>195</td> 1422<td>1.2919631</td> 1423<td>8.277508</td> 1424<td>26</td> 1425</tr> 1426<tr> 1427<td>TGATG</td> 1428<td>330</td> 1429<td>1.2740628</td> 1430<td>5.7939773</td> 1431<td>46</td> 1432</tr> 1433<tr> 1434<td>TGTCC</td> 1435<td>245</td> 1436<td>1.2716361</td> 1437<td>5.187652</td> 1438<td>21</td> 1439</tr> 1440<tr> 1441<td>GGCTT</td> 1442<td>240</td> 1443<td>1.2484628</td> 1444<td>5.199223</td> 1445<td>4</td> 1446</tr> 1447<tr> 1448<td>GACAG</td> 1449<td>265</td> 1450<td>1.2372932</td> 1451<td>5.833254</td> 1452<td>27</td> 1453</tr> 1454<tr> 1455<td>GGTGT</td> 1456<td>235</td> 1457<td>1.2251799</td> 1458<td>5.21082</td> 1459<td>27</td> 1460</tr> 1461<tr> 1462<td>AATGC</td> 1463<td>335</td> 1464<td>1.2226022</td> 1465<td>10.031068</td> 1466<td>21</td> 1467</tr> 1468<tr> 1469<td>TTTGC</td> 1470<td>300</td> 1471<td>1.2198299</td> 1472<td>5.0799813</td> 1473<td>9</td> 1474</tr> 1475<tr> 1476<td>GTCCT</td> 1477<td>230</td> 1478<td>1.1937809</td> 1479<td>5.1928453</td> 1480<td>47</td> 1481</tr> 1482<tr> 1483<td>GGGCC</td> 1484<td>140</td> 1485<td>1.1893166</td> 1486<td>6.3744006</td> 1487<td>43</td> 1488</tr> 1489<tr> 1490<td>ATCCC</td> 1491<td>240</td> 1492<td>1.1775287</td> 1493<td>6.135909</td> 1494<td>43</td> 1495</tr> 1496<tr> 1497<td>GCTCT</td> 1498<td>225</td> 1499<td>1.1678292</td> 1500<td>7.789268</td> 1501<td>47</td> 1502</tr> 1503<tr> 1504<td>AGCCC</td> 1505<td>185</td> 1506<td>1.1612303</td> 1507<td>6.2799363</td> 1508<td>31</td> 1509</tr> 1510<tr> 1511<td>GATCG</td> 1512<td>235</td> 1513<td>1.1581463</td> 1514<td>6.1633124</td> 1515<td>29</td> 1516</tr> 1517<tr> 1518<td>ACCCT</td> 1519<td>230</td> 1520<td>1.128465</td> 1521<td>6.129773</td> 1522<td>10</td> 1523</tr> 1524<tr> 1525<td>GTTGG</td> 1526<td>215</td> 1527<td>1.1209095</td> 1528<td>5.2160373</td> 1529<td>47</td> 1530</tr> 1531<tr> 1532<td>AGCTC</td> 1533<td>225</td> 1534<td>1.1063956</td> 1535<td>6.1434464</td> 1536<td>25</td> 1537</tr> 1538<tr> 1539<td>CCCAT</td> 1540<td>225</td> 1541<td>1.1039332</td> 1542<td>6.129773</td> 1543<td>21</td> 1544</tr> 1545<tr> 1546<td>CGGAA</td> 1547<td>235</td> 1548<td>1.0972222</td> 1549<td>9.333206</td> 1550<td>1</td> 1551</tr> 1552<tr> 1553<td>TCTTG</td> 1554<td>265</td> 1555<td>1.0775164</td> 1556<td>5.0799813</td> 1557<td>21</td> 1558</tr> 1559<tr> 1560<td>ATGCA</td> 1561<td>295</td> 1562<td>1.0766199</td> 1563<td>5.4714913</td> 1564<td>37</td> 1565</tr> 1566<tr> 1567<td>GCTTG</td> 1568<td>205</td> 1569<td>1.0663953</td> 1570<td>5.199223</td> 1571<td>2</td> 1572</tr> 1573<tr> 1574<td>AGCGG</td> 1575<td>165</td> 1576<td>1.0403174</td> 1577<td>12.603352</td> 1578<td>7</td> 1579</tr> 1580<tr> 1581<td>TTGCC</td> 1582<td>200</td> 1583<td>1.0380702</td> 1584<td>5.1876516</td> 1585<td>3</td> 1586</tr> 1587<tr> 1588<td>AACCT</td> 1589<td>285</td> 1590<td>1.0378094</td> 1591<td>5.4593143</td> 1592<td>13</td> 1593</tr> 1594<tr> 1595<td>AACCA</td> 1596<td>300</td> 1597<td>1.0349638</td> 1598<td>5.1721287</td> 1599<td>22</td> 1600</tr> 1601<tr> 1602<td>CCGAG</td> 1603<td>160</td> 1604<td>1.0065476</td> 1605<td>12.575301</td> 1606<td>25</td> 1607</tr> 1608<tr> 1609<td>GTTCC</td> 1610<td>190</td> 1611<td>0.9861668</td> 1612<td>6.4845653</td> 1613<td>27</td> 1614</tr> 1615<tr> 1616<td>ACTCA</td> 1617<td>270</td> 1618<td>0.983188</td> 1619<td>5.4593153</td> 1620<td>11</td> 1621</tr> 1622<tr> 1623<td>CTCAT</td> 1624<td>255</td> 1625<td>0.9801258</td> 1626<td>5.7624474</td> 1627<td>4</td> 1628</tr> 1629<tr> 1630<td>GAACC</td> 1631<td>210</td> 1632<td>0.9783144</td> 1633<td>5.820272</td> 1634<td>25</td> 1635</tr> 1636<tr> 1637<td>GGCGG</td> 1638<td>110</td> 1639<td>0.93654746</td> 1640<td>10.637051</td> 1641<td>44</td> 1642</tr> 1643<tr> 1644<td>GCGGG</td> 1645<td>110</td> 1646<td>0.93654746</td> 1647<td>6.3886194</td> 1648<td>36</td> 1649</tr> 1650<tr> 1651<td>ATCGG</td> 1652<td>190</td> 1653<td>0.93637353</td> 1654<td>6.163312</td> 1655<td>30</td> 1656</tr> 1657<tr> 1658<td>GTCTG</td> 1659<td>180</td> 1660<td>0.9363471</td> 1661<td>5.2096424</td> 1662<td>41</td> 1663</tr> 1664<tr> 1665<td>GCGGT</td> 1666<td>140</td> 1667<td>0.93170583</td> 1668<td>13.303162</td> 1669<td>8</td> 1670</tr> 1671<tr> 1672<td>CGGGG</td> 1673<td>105</td> 1674<td>0.8939771</td> 1675<td>6.3886194</td> 1676<td>46</td> 1677</tr> 1678<tr> 1679<td>GGGCG</td> 1680<td>105</td> 1681<td>0.8939771</td> 1682<td>8.518159</td> 1683<td>43</td> 1684</tr> 1685<tr> 1686<td>TCGGA</td> 1687<td>170</td> 1688<td>0.83780795</td> 1689<td>7.395975</td> 1690<td>31</td> 1691</tr> 1692<tr> 1693<td>CTTGT</td> 1694<td>205</td> 1695<td>0.83355045</td> 1696<td>5.0850673</td> 1697<td>38</td> 1698</tr> 1699<tr> 1700<td>TGCCG</td> 1701<td>125</td> 1702<td>0.83002883</td> 1703<td>14.93275</td> 1704<td>23</td> 1705</tr> 1706<tr> 1707<td>AGGCG</td> 1708<td>125</td> 1709<td>0.7881193</td> 1710<td>6.3016763</td> 1711<td>15</td> 1712</tr> 1713<tr> 1714<td>CGGTT</td> 1715<td>150</td> 1716<td>0.78028923</td> 1717<td>10.398446</td> 1718<td>9</td> 1719</tr> 1720<tr> 1721<td>GTGAC</td> 1722<td>150</td> 1723<td>0.7392424</td> 1724<td>6.163313</td> 1725<td>32</td> 1726</tr> 1727<tr> 1728<td>GCCGA</td> 1729<td>115</td> 1730<td>0.723456</td> 1731<td>12.575301</td> 1732<td>24</td> 1733</tr> 1734<tr> 1735<td>CCCGC</td> 1736<td>85</td> 1737<td>0.7188745</td> 1738<td>6.3460584</td> 1739<td>30</td> 1740</tr> 1741<tr> 1742<td>CCCCG</td> 1743<td>85</td> 1744<td>0.7188745</td> 1745<td>10.576764</td> 1746<td>29</td> 1747</tr> 1748<tr> 1749<td>CGAGA</td> 1750<td>135</td> 1751<td>0.6303192</td> 1752<td>9.333206</td> 1753<td>26</td> 1754</tr> 1755<tr> 1756<td>CGGGA</td> 1757<td>90</td> 1758<td>0.5674459</td> 1759<td>6.301676</td> 1760<td>24</td> 1761</tr> 1762<tr> 1763<td>CACGG</td> 1764<td>85</td> 1765<td>0.5347284</td> 1766<td>6.2876506</td> 1767<td>37</td> 1768</tr> 1769<tr> 1770<td>CGCCT</td> 1771<td>80</td> 1772<td>0.5300361</td> 1773<td>6.6286345</td> 1774<td>30</td> 1775</tr> 1776<tr> 1777<td>CCGCA</td> 1778<td>75</td> 1779<td>0.47076905</td> 1780<td>6.2799363</td> 1781<td>36</td> 1782</tr> 1783<tr> 1784<td>CGTTG</td> 1785<td>40</td> 1786<td>0.20807713</td> 1787<td>5.2044277</td> 1788<td>46</td> 1789</tr> 1790</table> 1791</div> 1792</body></html><div class="module"><h2>Files created by FastQC</h2><table cellspacing="2" cellpadding="2"> 1793<tr><td><a href="dataset_1.dat_fastqc.zip">dataset_1.dat_fastqc.zip (312.4 KB)</a></td></tr> 1794<tr><td><a href="duplication_levels.png">duplication_levels.png (14.5 KB)</a></td></tr> 1795<tr><td><a href="fastqc_data.txt">fastqc_data.txt (15.0 KB)</a></td></tr> 1796<tr><td><a href="fastqc_report.html">fastqc_report.html (25.2 KB)</a></td></tr> 1797<tr><td><a href="kmer_profiles.png">kmer_profiles.png (186.7 KB)</a></td></tr> 1798<tr><td><a href="per_base_gc_content.png">per_base_gc_content.png (12.1 KB)</a></td></tr> 1799<tr><td><a href="per_base_n_content.png">per_base_n_content.png (7.4 KB)</a></td></tr> 1800<tr><td><a href="per_base_quality.png">per_base_quality.png (9.6 KB)</a></td></tr> 1801<tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png (23.9 KB)</a></td></tr> 1802<tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png (29.6 KB)</a></td></tr> 1803<tr><td><a href="per_sequence_quality.png">per_sequence_quality.png (21.9 KB)</a></td></tr> 1804<tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png (18.9 KB)</a></td></tr> 1805<tr><td><a href="summary.txt">summary.txt (465 B)</a></td></tr> 1806</table> 1807<a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/> 1808FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing 1809</div></div><div class="footer">Produced by <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC</a> (version 0.10.0)</div>