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/test-data/peakcalling_ccat/3.0/ccat_test_log_out_1.txt

https://bitbucket.org/cistrome/cistrome-harvard/
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  1chromosome length information read. chromNum = 49!
  2config file read.
  3fragmentSize = 200
  4isStrandSensitiveMode = 0
  5slidingWinSize = 500
  6movingStep = 50
  7outputNum = 100000
  8minCount = 4
  9minScore = 5.000000
 10bootstrapPass = 50
 11randSeed = 123456
 12reading tag files......
 1310000 tags in L1, 10000 tags in L2.
 14tag file read.
 15pre-processing......
 16pre-processing finished.
 17estimating noise rate......
 18not enough reads for noise rate estimation.
 19noise rate estimation failed. noise rate set to be 1.0
 20noise rate = 1.000000
 21peak-finding......
 22chr1......884 candidate peaks.
 23chr1_random......0 candidate peaks.
 24chr10......0 candidate peaks.
 25chr10_random......0 candidate peaks.
 26chr11......0 candidate peaks.
 27chr11_random......0 candidate peaks.
 28chr12......0 candidate peaks.
 29chr13......0 candidate peaks.
 30chr13_random......0 candidate peaks.
 31chr14......0 candidate peaks.
 32chr15......0 candidate peaks.
 33chr15_random......0 candidate peaks.
 34chr16......0 candidate peaks.
 35chr16_random......0 candidate peaks.
 36chr17......0 candidate peaks.
 37chr17_random......0 candidate peaks.
 38chr18......0 candidate peaks.
 39chr18_random......0 candidate peaks.
 40chr19......0 candidate peaks.
 41chr19_random......0 candidate peaks.
 42chr2......0 candidate peaks.
 43chr2_random......0 candidate peaks.
 44chr20......0 candidate peaks.
 45chr21......0 candidate peaks.
 46chr21_random......0 candidate peaks.
 47chr22......0 candidate peaks.
 48chr22_random......0 candidate peaks.
 49chr22_h2_hap1......0 candidate peaks.
 50chr3......0 candidate peaks.
 51chr3_random......0 candidate peaks.
 52chr4......0 candidate peaks.
 53chr4_random......0 candidate peaks.
 54chr5......0 candidate peaks.
 55chr5_random......0 candidate peaks.
 56chr5_h2_hap1......0 candidate peaks.
 57chr6......0 candidate peaks.
 58chr6_random......0 candidate peaks.
 59chr6_cox_hap1......0 candidate peaks.
 60chr6_qbl_hap2......0 candidate peaks.
 61chr7......0 candidate peaks.
 62chr7_random......0 candidate peaks.
 63chr8......0 candidate peaks.
 64chr8_random......0 candidate peaks.
 65chr9......0 candidate peaks.
 66chr9_random......0 candidate peaks.
 67chrM......0 candidate peaks.
 68chrX......0 candidate peaks.
 69chrX_random......0 candidate peaks.
 70chrY......0 candidate peaks.
 71peak-finding finished.
 72Significance Analysis......
 73estimating paramters......
 74smoothing factor = 0.356298
 75estimating local FDR.....
 76FDR at the threshold 5.000000 is 0.999000. You may want to adjust the threshold by inspecting the output files.
 77post-processing......
 78chr1......finished.
 79chr1_random......finished.
 80chr10......finished.
 81chr10_random......finished.
 82chr11......finished.
 83chr11_random......finished.
 84chr12......finished.
 85chr13......finished.
 86chr13_random......finished.
 87chr14......finished.
 88chr15......finished.
 89chr15_random......finished.
 90chr16......finished.
 91chr16_random......finished.
 92chr17......finished.
 93chr17_random......finished.
 94chr18......finished.
 95chr18_random......finished.
 96chr19......finished.
 97chr19_random......finished.
 98chr2......finished.
 99chr2_random......finished.
100chr20......finished.
101chr21......finished.
102chr21_random......finished.
103chr22......finished.
104chr22_random......finished.
105chr22_h2_hap1......finished.
106chr3......finished.
107chr3_random......finished.
108chr4......finished.
109chr4_random......finished.
110chr5......finished.
111chr5_random......finished.
112chr5_h2_hap1......finished.
113chr6......finished.
114chr6_random......finished.
115chr6_cox_hap1......finished.
116chr6_qbl_hap2......finished.
117chr7......finished.
118chr7_random......finished.
119chr8......finished.
120chr8_random......finished.
121chr9......finished.
122chr9_random......finished.
123chrM......finished.
124chrX......finished.
125chrX_random......finished.
126chrY......finished.
127post-processing finished.
128Significance analysis finished.
129saving results.......
130results saved.
131CCAT process completed!