/test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 13 lines · 13 code · 0 blank · 0 comment · 0 complexity · e92669b7d642af79e220c168f8a082e7 MD5 · raw file 

    

  1. GenomeAnalysisEngine - Strictness is SILENT
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  2. CountCovariatesWalker - The covariates being used here:
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  3. CountCovariatesWalker - 	ReadGroupCovariate
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  4. CountCovariatesWalker - 	QualityScoreCovariate
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  5. CountCovariatesWalker - 	CycleCovariate
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  6. CountCovariatesWalker - 	DinucCovariate
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  7. CountCovariatesWalker - 	HomopolymerCovariate
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  8. CountCovariatesWalker - 	MinimumNQSCovariate
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  9. CountCovariatesWalker - 	PositionCovariate
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  10. TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] 
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  11. CountCovariatesWalker - Writing raw recalibration data...
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  12. CountCovariatesWalker - ...done!
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  13. TraversalEngine - Total runtime
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