/test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains
Unknown | 13 lines | 13 code | 0 blank | 0 comment | 0 complexity | e92669b7d642af79e220c168f8a082e7 MD5 | raw file
1GenomeAnalysisEngine - Strictness is SILENT 2CountCovariatesWalker - The covariates being used here: 3CountCovariatesWalker - ReadGroupCovariate 4CountCovariatesWalker - QualityScoreCovariate 5CountCovariatesWalker - CycleCovariate 6CountCovariatesWalker - DinucCovariate 7CountCovariatesWalker - HomopolymerCovariate 8CountCovariatesWalker - MinimumNQSCovariate 9CountCovariatesWalker - PositionCovariate 10TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] 11CountCovariatesWalker - Writing raw recalibration data... 12CountCovariatesWalker - ...done! 13TraversalEngine - Total runtime