/test-data/gatk/gatk_analyze_covariates/gatk_analyze_covariates_out_1.log.contains
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1Program Name: org.broadinstitute.sting.analyzecovariates.AnalyzeCovariates 2Reading in input csv file... 3...Done! 4Writing out intermediate tables for R... 5Writing out data tables for read group: A Fake phiX Sample with 340 observations and aggregate residual error = -9.136 6...Done! 7Calling analysis R scripts and writing out figures... 8Analyzing read group: A Fake phiX Sample 9...Done!