/test-data/rgtestouts/rgGRR/rgGRRtest1.html

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  6. <meta name="generator" content="Galaxy rgGRR.py tool output - see http://g2.trac.bx.psu.edu/" />
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  12. <h4><div>Output from rgGRR.py run at 19/05/2010 15:14:41<br>
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  14. If you need to rerun this analysis, the command line was
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  15. <pre>'/opt/galaxy/tools/rgenetics/rgGRR.py' '/opt/galaxy/test-data/tinywga' 'tinywga' '/opt/galaxy/test-data/rgtestouts/rgGRR/rgGRRtest1.html' '/opt/galaxy/test-data/rgtestouts/rgGRR' 'rgGRRtest1' '100' '6'</pre>
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  16. </div> <embed src="rgGRRtest1.svg" type="image/svg+xml" width="1150" height="600" /><div><h4>Click the links below to save output files and plots</h4><br><ol>
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  17. <li><a href="rgGRRtest1.svg" type="image/svg+xml" >rgGRR Plot (requires SVG)</a></li>
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  18. <li><a href="rgGRRtest1_table.xls">Mean by SD alleles shared - 780 rows</a></li>
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  19. <li><a href="rgGRRtest1.html">rgGRRtest1.html</a></li>
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  20. <li><a href="Log_rgGRRtest1.txt">Log_rgGRRtest1.txt</a></li>
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  21. </ol></div><div><h2>Outliers in tab delimited files linked above are also listed below</h2></div><div><hr><h3>Log from this job (also stored in Log_rgGRRtest1.txt)</h3><pre>Reading genotypes for 40 subjects and 25 markers
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  22. Calculating 780 pairs...
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  23. Estimated time is 0.00 to 0.00 seconds ...
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  24. T1:  0.00254368782043	T2:  0.018296957016	T3:  0.000444173812866	TOT: 0.022047996521	0 pairs with no (or not enough) comparable genotypes (0.0%)
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  25. Relstate dupe (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
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  26. Relstate parentchild (n=26): mean(mean)=1.68 sdev(mean)=0.19, mean(sdev)=0.39 sdev(sdev)=0.19
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  27. Relstate sibpairs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
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  28. Relstate halfsibs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
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  29. Relstate parents (n=40): mean(mean)=1.46 sdev(mean)=0.25, mean(sdev)=0.55 sdev(sdev)=0.17
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  30. Relstate unrelated (n=714): mean(mean)=1.44 sdev(mean)=0.21, mean(sdev)=0.58 sdev(sdev)=0.15
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  31. Relstate unknown (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00
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  32. 780 pairs are available of 780
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  33. Outliers: 0
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  34. Plotting ...</pre><hr></div></body></html>
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