/test-data/rgtestouts/rgGRR/rgGRRtest1.html
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1<?xml version="1.0" encoding="utf-8" ?> 2<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> 3<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> 4<head> 5<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> 6<meta name="generator" content="Galaxy rgGRR.py tool output - see http://g2.trac.bx.psu.edu/" /> 7<title></title> 8<link rel="stylesheet" href="/static/style/base.css" type="text/css" /> 9</head> 10<body> 11<div class="document"> 12<h4><div>Output from rgGRR.py run at 19/05/2010 15:14:41<br> 13</h4> 14If you need to rerun this analysis, the command line was 15<pre>'/opt/galaxy/tools/rgenetics/rgGRR.py' '/opt/galaxy/test-data/tinywga' 'tinywga' '/opt/galaxy/test-data/rgtestouts/rgGRR/rgGRRtest1.html' '/opt/galaxy/test-data/rgtestouts/rgGRR' 'rgGRRtest1' '100' '6'</pre> 16</div> <embed src="rgGRRtest1.svg" type="image/svg+xml" width="1150" height="600" /><div><h4>Click the links below to save output files and plots</h4><br><ol> 17<li><a href="rgGRRtest1.svg" type="image/svg+xml" >rgGRR Plot (requires SVG)</a></li> 18<li><a href="rgGRRtest1_table.xls">Mean by SD alleles shared - 780 rows</a></li> 19<li><a href="rgGRRtest1.html">rgGRRtest1.html</a></li> 20<li><a href="Log_rgGRRtest1.txt">Log_rgGRRtest1.txt</a></li> 21</ol></div><div><h2>Outliers in tab delimited files linked above are also listed below</h2></div><div><hr><h3>Log from this job (also stored in Log_rgGRRtest1.txt)</h3><pre>Reading genotypes for 40 subjects and 25 markers 22Calculating 780 pairs... 23Estimated time is 0.00 to 0.00 seconds ... 24T1: 0.00254368782043 T2: 0.018296957016 T3: 0.000444173812866 TOT: 0.022047996521 0 pairs with no (or not enough) comparable genotypes (0.0%) 25Relstate dupe (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00 26Relstate parentchild (n=26): mean(mean)=1.68 sdev(mean)=0.19, mean(sdev)=0.39 sdev(sdev)=0.19 27Relstate sibpairs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00 28Relstate halfsibs (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00 29Relstate parents (n=40): mean(mean)=1.46 sdev(mean)=0.25, mean(sdev)=0.55 sdev(sdev)=0.17 30Relstate unrelated (n=714): mean(mean)=1.44 sdev(mean)=0.21, mean(sdev)=0.58 sdev(sdev)=0.15 31Relstate unknown (n=0): mean(mean)=nan sdev(mean)=0.00, mean(sdev)=nan sdev(sdev)=0.00 32780 pairs are available of 780 33Outliers: 0 34Plotting ...</pre><hr></div></body></html>