/test-data/rgtestouts/rgGRR/rgGRRtest1.svg

https://bitbucket.org/cistrome/cistrome-harvard/ · SVG · 770 lines · 727 code · 30 blank · 13 comment · 2 complexity · f0540ee6eeb652bae92cc9275f1a23f8 MD5 · raw file 

    

  1. <?xml version="1.0" standalone="no"?>
    2. 

  2. <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.2//EN" "http://www.w3.org/Graphics/SVG/1.2/DTD/svg12.dtd">
    3. 

  3. 

  4. <svg width="1280" height="800"
    5. 

  5.      xmlns="http://www.w3.org/2000/svg" version="1.2"
    6. 

  6.      xmlns:xlink="http://www.w3.org/1999/xlink" viewBox="0 0 1280 800" onload="init()">
    7. 

  7. 

  8.   <script type="text/ecmascript" xlink:href="/static/scripts/checkbox_and_radiobutton.js"/>
    9. 

  9.   <script type="text/ecmascript" xlink:href="/static/scripts/helper_functions.js"/>
    10. 

  10.   <script type="text/ecmascript" xlink:href="/static/scripts/timer.js"/>
    11. 

  11.   <script type="text/ecmascript">
    12. 

  12.     <![CDATA[
    13. 

  13.       var checkBoxes = new Array();
    14. 

  14.       var radioGroupBandwidth;
    15. 

  15.       var colours = ['cyan','dodgerblue','mediumpurple','forestgreen','lightgreen','gold','gray'];
    16. 

  16.       function init() {
    17. 

  17.           var style = {"font-family":"Arial,Helvetica", "fill":"black", "font-size":12};
    18. 

  18.           var dist = 12;
    19. 

  19.           var yOffset = 4;
    20. 

  20. 

  21.           //A checkBox for each relationship type dupe,parentchild,sibpair,halfsib,parents,unrel,unkn
    22. 

  22.           checkBoxes["dupe"] = new checkBox("dupe","checkboxes",20,40,"cbRect","cbCross",true,"Duplicate",style,dist,yOffset,undefined,hideShowLayer);
    23. 

  23.           checkBoxes["parentchild"] = new checkBox("parentchild","checkboxes",20,60,"cbRect","cbCross",true,"Parent-Child",style,dist,yOffset,undefined,hideShowLayer);
    24. 

  24.           checkBoxes["sibpairs"] = new checkBox("sibpairs","checkboxes",20,80,"cbRect","cbCross",true,"Sib-pairs",style,dist,yOffset,undefined,hideShowLayer);
    25. 

  25.           checkBoxes["halfsibs"] = new checkBox("halfsibs","checkboxes",20,100,"cbRect","cbCross",true,"Half-sibs",style,dist,yOffset,undefined,hideShowLayer);
    26. 

  26.           checkBoxes["parents"] = new checkBox("parents","checkboxes",20,120,"cbRect","cbCross",true,"Parents",style,dist,yOffset,undefined,hideShowLayer);
    27. 

  27.           checkBoxes["unrelated"] = new checkBox("unrelated","checkboxes",20,140,"cbRect","cbCross",true,"Unrelated",style,dist,yOffset,undefined,hideShowLayer);
    28. 

  28.           checkBoxes["unknown"] = new checkBox("unknown","checkboxes",20,160,"cbRect","cbCross",true,"Unknown",style,dist,yOffset,undefined,hideShowLayer);
    29. 

  29. 

  30.       }
    31. 

  31. 

  32.       function hideShowLayer(id, status, label) {
    33. 

  33.           var vis = "hidden";
    34. 

  34.           if (status) {
    35. 

  35.               vis = "visible";
    36. 

  36.           }
    37. 

  37.           document.getElementById(id).setAttributeNS(null, 'visibility', vis);
    38. 

  38.       }
    39. 

  39. 

  40.       function showBTT(evt, rel, mm, dm, md, dd, n, mg, dg, lg, hg) {
    41. 

  41.     var x = parseInt(evt.pageX)-250;
    42. 

  42.     var y = parseInt(evt.pageY)-110;
    43. 

  43.         switch(rel) {
    44. 

  44.         case 0:
    45. 

  45.         fill = colours[rel];
    46. 

  46.         relt = "dupe";
    47. 

  47.         break;
    48. 

  48.         case 1:
    49. 

  49.         fill = colours[rel];
    50. 

  50.         relt = "parentchild";
    51. 

  51.         break;
    52. 

  52.         case 2:
    53. 

  53.         fill = colours[rel];
    54. 

  54.         relt = "sibpairs";
    55. 

  55.         break;
    56. 

  56.         case 3:
    57. 

  57.         fill = colours[rel];
    58. 

  58.         relt = "halfsibs";
    59. 

  59.         break;
    60. 

  60.         case 4:
    61. 

  61.         fill = colours[rel];
    62. 

  62.         relt = "parents";
    63. 

  63.         break;
    64. 

  64.         case 5:
    65. 

  65.         fill = colours[rel];
    66. 

  66.         relt = "unrelated";
    67. 

  67.         break;
    68. 

  68.         case 6:
    69. 

  69.         fill = colours[rel];
    70. 

  70.         relt = "unknown";
    71. 

  71.         break;
    72. 

  72.         default:
    73. 

  73.         fill = "cyan";
    74. 

  74.         relt = "ERROR_CODE: "+rel;
    75. 

  75.     }
    76. 

  76. 

  77.     document.getElementById("btRel").textContent = "GROUP: "+relt;
    78. 

  78.     document.getElementById("btMean").textContent = "mean="+mm+" +/- "+dm;
    79. 

  79.         document.getElementById("btSdev").textContent = "sdev="+dm+" +/- "+dd;
    80. 

  80.         document.getElementById("btPair").textContent = "npairs="+n;
    81. 

  81.         document.getElementById("btGeno").textContent = "ngenos="+mg+" +/- "+dg+" (min="+lg+", max="+hg+")";
    82. 

  82.         document.getElementById("btHead").setAttribute('fill', fill);
    83. 

  83. 

  84.         var tt = document.getElementById("btTip");
    85. 

  85.     tt.setAttribute("transform", "translate("+x+","+y+")");
    86. 

  86.     tt.setAttribute('visibility', 'visible');
    87. 

  87.       }
    88. 

  88. 

  89.       function showOTT(evt, rel, s1, s2, mean, sdev, ngeno, rmean, rsdev) {
    90. 

  90.     var x = parseInt(evt.pageX)-150;
    91. 

  91.     var y = parseInt(evt.pageY)-180;
    92. 

  92. 

  93.         switch(rel) {
    94. 

  94.         case 0:
    95. 

  95.         fill = colours[rel];
    96. 

  96.         relt = "dupe";
    97. 

  97.         break;
    98. 

  98.         case 1:
    99. 

  99.         fill = colours[rel];
    100. 

  100.         relt = "parentchild";
    101. 

  101.         break;
    102. 

  102.         case 2:
    103. 

  103.         fill = colours[rel];
    104. 

  104.         relt = "sibpairs";
    105. 

  105.         break;
    106. 

  106.         case 3:
    107. 

  107.         fill = colours[rel];
    108. 

  108.         relt = "halfsibs";
    109. 

  109.         break;
    110. 

  110.         case 4:
    111. 

  111.         fill = colours[rel];
    112. 

  112.         relt = "parents";
    113. 

  113.         break;
    114. 

  114.         case 5:
    115. 

  115.         fill = colours[rel];
    116. 

  116.         relt = "unrelated";
    117. 

  117.         break;
    118. 

  118.         case 6:
    119. 

  119.         fill = colours[rel];
    120. 

  120.         relt = "unknown";
    121. 

  121.         break;
    122. 

  122.         default:
    123. 

  123.         fill = "cyan";
    124. 

  124.         relt = "ERROR_CODE: "+rel;
    125. 

  125.     }
    126. 

  126. 

  127.     document.getElementById("otRel").textContent = "PAIR: "+relt;
    128. 

  128.     document.getElementById("otS1").textContent = "s1="+s1;
    129. 

  129.     document.getElementById("otS2").textContent = "s2="+s2;
    130. 

  130.     document.getElementById("otMean").textContent = "mean="+mean;
    131. 

  131.         document.getElementById("otSdev").textContent = "sdev="+sdev;
    132. 

  132.         document.getElementById("otGeno").textContent = "ngenos="+ngeno;
    133. 

  133.         document.getElementById("otRmean").textContent = "relmean="+rmean;
    134. 

  134.         document.getElementById("otRsdev").textContent = "relsdev="+rsdev;
    135. 

  135.     document.getElementById("otHead").setAttribute('fill', fill);
    136. 

  136. 

  137.         var tt = document.getElementById("otTip");
    138. 

  138.     tt.setAttribute("transform", "translate("+x+","+y+")");
    139. 

  139.     tt.setAttribute('visibility', 'visible');
    140. 

  140.       }
    141. 

  141. 

  142.       function hideBTT(evt) {
    143. 

  143.         document.getElementById("btTip").setAttributeNS(null, 'visibility', 'hidden');
    144. 

  144.       }
    145. 

  145. 

  146.       function hideOTT(evt) {
    147. 

  147.         document.getElementById("otTip").setAttributeNS(null, 'visibility', 'hidden');
    148. 

  148.       }
    149. 

  149. 

  150.      ]]>
    151. 

  151.   </script>
    152. 

  152.   <defs>
    153. 

  153.     <!-- symbols for check boxes -->
    154. 

  154.     <symbol id="cbRect" overflow="visible">
    155. 

  155.         <rect x="-5" y="-5" width="10" height="10" fill="white" stroke="dimgray" stroke-width="1" cursor="pointer"/>
    156. 

  156.     </symbol>
    157. 

  157.     <symbol id="cbCross" overflow="visible">
    158. 

  158.         <g pointer-events="none" stroke="black" stroke-width="1">
    159. 

  159.             <line x1="-3" y1="-3" x2="3" y2="3"/>
    160. 

  160.             <line x1="3" y1="-3" x2="-3" y2="3"/>
    161. 

  161.         </g>
    162. 

  162.     </symbol>
    163. 

  163.   </defs>
    164. 

  164. 

  165. <desc>Developer Works Dynamic Scatter Graph Scaling Example</desc>
    166. 

  166. 

  167. <!-- Now Draw the main X and Y axis -->
    168. 

  168. <g style="stroke-width:1.0; stroke:black; shape-rendering:crispEdges">
    169. 

  169.    <!-- X Axis top and bottom -->
    170. 

  170.    <path d="M 100 100 L 1250 100 Z"/>
    171. 

  171.    <path d="M 100 700 L 1250 700 Z"/>
    172. 

  172. 

  173.    <!-- Y Axis left and right -->
    174. 

  174.    <path d="M 100  100 L 100  700 Z"/>
    175. 

  175.    <path d="M 1250 100 L 1250 700 Z"/>
    176. 

  176. </g>
    177. 

  177. 

  178. <g transform="translate(100,100)">
    179. 

  179. 

  180.   <!-- Grid Lines -->
    181. 

  181.   <g style="fill:none; stroke:#dddddd; stroke-width:1; stroke-dasharray:2,2; text-anchor:end; shape-rendering:crispEdges">
    182. 

  182. 

  183.     <!-- Vertical grid lines -->
    184. 

  184.     <line x1="125" y1="0" x2="115" y2="600" />
    185. 

  185.     <line x1="230" y1="0" x2="230" y2="600" />
    186. 

  186.     <line x1="345" y1="0" x2="345" y2="600" />
    187. 

  187.     <line x1="460" y1="0" x2="460" y2="600" />
    188. 

  188.     <line x1="575" y1="0" x2="575" y2="600" style="stroke-dasharray:none;" />
    189. 

  189.     <line x1="690" y1="0" x2="690" y2="600"   />
    190. 

  190.     <line x1="805" y1="0" x2="805" y2="600"   />
    191. 

  191.     <line x1="920" y1="0" x2="920" y2="600"   />
    192. 

  192.     <line x1="1035" y1="0" x2="1035" y2="600" />
    193. 

  193. 

  194.     <!-- Horizontal grid lines -->
    195. 

  195.     <line x1="0" y1="60" x2="1150" y2="60"   />
    196. 

  196.     <line x1="0" y1="120" x2="1150" y2="120" />
    197. 

  197.     <line x1="0" y1="180" x2="1150" y2="180" />
    198. 

  198.     <line x1="0" y1="240" x2="1150" y2="240" />
    199. 

  199.     <line x1="0" y1="300" x2="1150" y2="300" style="stroke-dasharray:none;" />
    200. 

  200.     <line x1="0" y1="360" x2="1150" y2="360" />
    201. 

  201.     <line x1="0" y1="420" x2="1150" y2="420" />
    202. 

  202.     <line x1="0" y1="480" x2="1150" y2="480" />
    203. 

  203.     <line x1="0" y1="540" x2="1150" y2="540" />
    204. 

  204.   </g>
    205. 

  205. 

  206.   <!-- Legend -->
    207. 

  207.   <g style="fill:black; stroke:none" font-size="12" font-family="Arial" transform="translate(25,25)">
    208. 

  208.     <rect width="160" height="270" style="fill:none; stroke:black; shape-rendering:crispEdges" />
    209. 

  209.     <text x="5" y="20" style="fill:black; stroke:none;" font-size="13" font-weight="bold">Given Pair Relationship</text>
    210. 

  210.     <rect x="120" y="35" width="10" height="10" fill="cyan" stroke="cyan" stroke-width="1" cursor="pointer"/>
    211. 

  211.     <rect x="120" y="55" width="10" height="10" fill="dodgerblue" stroke="dodgerblue" stroke-width="1" cursor="pointer"/>
    212. 

  212.     <rect x="120" y="75" width="10" height="10" fill="mediumpurple" stroke="mediumpurple" stroke-width="1" cursor="pointer"/>
    213. 

  213.     <rect x="120" y="95" width="10" height="10" fill="forestgreen" stroke="forestgreen" stroke-width="1" cursor="pointer"/>
    214. 

  214.     <rect x="120" y="115" width="10" height="10" fill="lightgreen" stroke="lightgreen" stroke-width="1" cursor="pointer"/>
    215. 

  215.     <rect x="120" y="135" width="10" height="10" fill="gold" stroke="gold" stroke-width="1" cursor="pointer"/>
    216. 

  216.     <rect x="120" y="155" width="10" height="10" fill="gray" stroke="gray" stroke-width="1" cursor="pointer"/>
    217. 

  217.     <text x="15"  y="195" style="fill:black; stroke:none" font-size="12" font-family="Arial" >Zscore gt 15</text>
    218. 

  218.     <circle cx="125" cy="192" r="6" style="stroke:red; fill:gold; fill-opacity:1.0; stroke-width:1;"/>
    219. 

  219.     <text x="15" y="215" style="fill:black; stroke:none" font-size="12" font-family="Arial" >Zscore 4 to 15</text>
    220. 

  220.     <circle cx="125" cy="212" r="3" style="stroke:gold; fill:gold; fill-opacity:1.0; stroke-width:1;"/>
    221. 

  221.     <text x="15" y="235" style="fill:black; stroke:none" font-size="12" font-family="Arial" >Zscore lt 4</text>
    222. 

  222.     <circle cx="125" cy="232" r="2" style="stroke:gold; fill:gold; fill-opacity:1.0; stroke-width:1;"/>
    223. 

  223.     <g id="checkboxes">
    224. 

  224.     </g>
    225. 

  225.   </g>
    226. 

  226. 

  227. 

  228.    <g style='fill:black; stroke:none' font-size="17" font-family="Arial">
    229. 

  229.     <!-- X Axis Labels -->
    230. 

  230.     <text x="480" y="660">Mean Alleles Shared</text>
    231. 

  231.     <text x="0"    y="630" >1.0</text>
    232. 

  232.     <text x="277"  y="630" >1.25</text>
    233. 

  233.     <text x="564"  y="630" >1.5</text>
    234. 

  234.     <text x="842" y="630" >1.75</text>
    235. 

  235.     <text x="1140" y="630" >2.0</text>
    236. 

  236.   </g>
    237. 

  237. 

  238.   <g transform="rotate(270)" style="fill:black; stroke:none" font-size="17" font-family="Arial">
    239. 

  239.     <!-- Y Axis Labels -->
    240. 

  240.     <text x="-350" y="-40">SD Alleles Shared</text>
    241. 

  241.     <text x="-20" y="-10" >1.0</text>
    242. 

  242.     <text x="-165" y="-10" >0.75</text>
    243. 

  243.     <text x="-310" y="-10" >0.5</text>
    244. 

  244.     <text x="-455" y="-10" >0.25</text>
    245. 

  245.     <text x="-600" y="-10" >0.0</text>
    246. 

  246.   </g>
    247. 

  247. 

  248. <!-- Plot Title -->
    249. 

  249. <g style="fill:black; stroke:none" font-size="18" font-family="Arial">
    250. 

  250.     <text x="425" y="-30">rgGRRtest1 (40 subjects, 25 snp)</text>
    251. 

  251. </g>
    252. 

  252. 

  253. <!-- One group/layer of points for each relationship type -->
    254. 

  254. <g id="unrelated" style="stroke:gold; fill:gold; fill-opacity:1.0; stroke-width:1;" cursor="pointer">
    255. 

  255. <circle cx="276" cy="202" r="2"
    256. 

  256.                 onmouseover="showBTT(evt, 5, 1.24, 0.00, 0.66, 0.00, 2, 2, 0, 2, 2)"
    257. 

  257.                 onmouseout="hideBTT(evt)" />
    258. 

  258. <circle cx="479" cy="134" r="2"
    259. 

  259.                 onmouseover="showBTT(evt, 5, 1.42, 0.00, 0.78, 0.00, 2, 2, 0, 2, 2)"
    260. 

  260.                 onmouseout="hideBTT(evt)" />
    261. 

  261. <circle cx="874" cy="338" r="2"
    262. 

  262.                 onmouseover="showBTT(evt, 5, 1.76, 0.00, 0.44, 0.00, 12, 2, 0, 2, 2)"
    263. 

  263.                 onmouseout="hideBTT(evt)" />
    264. 

  264. <circle cx="230" cy="212" r="2"
    265. 

  265.                 onmouseover="showBTT(evt, 5, 1.20, 0.00, 0.65, 0.00, 7, 2, 0, 2, 2)"
    266. 

  266.                 onmouseout="hideBTT(evt)" />
    267. 

  267. <circle cx="827" cy="325" r="2"
    268. 

  268.                 onmouseover="showBTT(evt, 5, 1.72, 0.00, 0.46, 0.00, 22, 2, 0, 2, 2)"
    269. 

  269.                 onmouseout="hideBTT(evt)" />
    270. 

  270. <circle cx="183" cy="152" r="2" onmouseover="showOTT(evt, 5, '1340,9,0,0', '1345,12,0,0', 1.16, 0.75, 25, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    271. 

  271. <circle cx="873" cy="338" r="2"
    272. 

  272.                 onmouseover="showBTT(evt, 5, 1.76, 0.00, 0.44, 0.00, 3, 2, 0, 2, 2)"
    273. 

  273.                 onmouseout="hideBTT(evt)" />
    274. 

  274. <circle cx="598" cy="208" r="2" onmouseover="showOTT(evt, 5, '117,2,0,0', '1334,12,0,0', 1.52, 0.65, 25, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    275. 

  275. <circle cx="799" cy="317" r="2" onmouseover="showOTT(evt, 5, '105,3,0,0', '13,2,0,0', 1.70, 0.47, 23, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    276. 

  276. <circle cx="506" cy="50" r="2"
    277. 

  277.                 onmouseover="showBTT(evt, 5, 1.44, 0.00, 0.92, 0.00, 2, 2, 0, 2, 2)"
    278. 

  278.                 onmouseout="hideBTT(evt)" />
    279. 

  279. <circle cx="550" cy="293" r="2"
    280. 

  280.                 onmouseover="showBTT(evt, 5, 1.48, 0.00, 0.51, 0.00, 7, 2, 0, 2, 2)"
    281. 

  281.                 onmouseout="hideBTT(evt)" />
    282. 

  282. <circle cx="414" cy="83" r="2" onmouseover="showOTT(evt, 5, '101,3,0,0', '1340,9,0,0', 1.36, 0.86, 25, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    283. 

  283. <circle cx="230" cy="80" r="2"
    284. 

  284.                 onmouseover="showBTT(evt, 5, 1.20, 0.00, 0.87, 0.00, 2, 2, 0, 2, 2)"
    285. 

  285.                 onmouseout="hideBTT(evt)" />
    286. 

  286. <circle cx="92" cy="144" r="2" onmouseover="showOTT(evt, 5, '1334,12,0,0', '1344,1,12,13', 1.08, 0.76, 25, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    287. 

  287. <circle cx="414" cy="258" r="2"
    288. 

  288.                 onmouseover="showBTT(evt, 5, 1.36, 0.00, 0.57, 0.00, 6, 2, 0, 2, 2)"
    289. 

  289.                 onmouseout="hideBTT(evt)" />
    290. 

  290. <circle cx="1099" cy="474" r="2"
    291. 

  291.                 onmouseover="showBTT(evt, 5, 1.96, 0.00, 0.21, 0.00, 4, 2, 0, 2, 2)"
    292. 

  292.                 onmouseout="hideBTT(evt)" />
    293. 

  293. <circle cx="46" cy="194" r="2" onmouseover="showOTT(evt, 5, '1341,11,0,0', '1345,12,0,0', 1.04, 0.68, 25, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    294. 

  294. <circle cx="479" cy="169" r="2" onmouseover="showOTT(evt, 5, '13,3,0,0', '1341,1,11,12', 1.42, 0.72, 24, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    295. 

  295. <circle cx="1150" cy="600" r="2"
    296. 

  296.                 onmouseover="showBTT(evt, 5, 2.00, 0.00, 0.00, 0.00, 7, 2, 0, 2, 2)"
    297. 

  297.                 onmouseout="hideBTT(evt)" />
    298. 

  298. <circle cx="600" cy="293" r="2" onmouseover="showOTT(evt, 5, '112,3,0,0', '13,2,0,0', 1.52, 0.51, 23, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    299. 

  299. <circle cx="183" cy="187" r="2" onmouseover="showOTT(evt, 5, '112,1,3,2', '1341,12,0,0', 1.16, 0.69, 25, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    300. 

  300. <circle cx="450" cy="300" r="2" onmouseover="showOTT(evt, 5, '13,2,0,0', '1334,10,0,0', 1.39, 0.50, 23, 1.44, 0.58)" onmouseout="hideOTT(evt)" />
    301. 

  301. <circle cx="322" cy="65" r="2"
    302. 

  302.                 onmouseover="showBTT(evt, 5, 1.28, 0.00, 0.89, 0.00, 2, 2, 0, 2, 2)"
    303. 

  303.                 onmouseout="hideBTT(evt)" />
    304. 

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    708. 

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    709. 

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    739. 

  739. <g id="halfsibs" style="stroke:forestgreen; fill:forestgreen; fill-opacity:1.0; stroke-width:1;" cursor="pointer">
    740. 

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    741. 

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    743. 

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  746. <!-- End of Data -->
    747. 

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    748. 

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    751. 

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    764. 

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    770. 

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    771.