/test-data/rgtestouts/rgHaploView/rgHaploViewtest1.ped.TAGS

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 25 lines · 24 code · 1 blank · 0 comment · 0 complexity · 2bb215c33f306bdc16131cb51ab74bbc MD5 · raw file 

    

  1. #captured 10 of 10 alleles at r^2 >= 0.8
    2. 

  2. #captured 100 percent of alleles with mean r^2 of 1.0
    3. 

  3. #using 9 Tag SNPs in 9 tests.
    4. 

  4. Allele	Best Test	r^2 w/test
    5. 

  5. rs2283802	rs2283802	1.0	
    6. 

  6. rs2267000	rs2267000	1.0	
    7. 

  7. rs16997606	rs16997606	1.0	
    8. 

  8. rs4820537	rs4820537	1.0	
    9. 

  9. rs3788347	rs3788347	1.0	
    10. 

  10. rs756632	rs756632	1.0	
    11. 

  11. rs4820539	rs4820539	1.0	
    12. 

  12. rs2283804	rs2283804	1.0	
    13. 

  13. rs2267006	rs2283804	1.0	
    14. 

  14. rs4822363	rs4822363	1.0	
    15. 

  15. 

  16. Test	Alleles Captured
    17. 

  17. rs2283804	rs2267006,rs2283804
    18. 

  18. rs756632	rs756632
    19. 

  19. rs4820539	rs4820539
    20. 

  20. rs16997606	rs16997606
    21. 

  21. rs4822363	rs4822363
    22. 

  22. rs2267000	rs2267000
    23. 

  23. rs3788347	rs3788347
    24. 

  24. rs4820537	rs4820537
    25. 

  25. rs2283802	rs2283802
    26.