/test-data/rgtestouts/rgPedSub/rgPedSubtest1.log

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 12 lines · 11 code · 1 blank · 0 comment · 0 complexity · 5982851e63591d8d7fed03dd649f8fce MD5 · raw file 

    

  1. config file /share/shared/galaxy/test-data/rgtestouts/rgPedSub/pedsub.script = 
    2. 

  2. title~~~~rgPedSubtest1
    3. 

  3. output1~~~~/share/shared/galaxy/test-data/rgtestouts/rgPedSub/rgPedSubtest1.lped
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  4. outformat~~~~lped
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  5. basename~~~~tinywga
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  6. inped~~~~/share/shared/galaxy/test-data/tinywga
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  7. outdir~~~~/share/shared/galaxy/test-data/rgtestouts/rgPedSub
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  8. region~~~~
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  9. relfilter~~~~all
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  10. rslist~~~~rs2283802Xrs2267000Xrs16997606Xrs4820537Xrs3788347Xrs756632Xrs4820539Xrs2283804Xrs2267006Xrs4822363X
    11. 

  11. ## rgPedSub.py looking for 10 rs (['rs2283802', 'rs2267000', 'rs16997606', 'rs4820537', 'rs3788347']....etc)
    12.