/test-data/rgtestouts/rgQC/MarkerDetails_rgQCtest1.xls

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 26 lines · 26 code · 0 blank · 0 comment · 0 complexity · 8689b03ee65ca0aaf1ad14f9c24c2743 MD5 · raw file 

    

  1. snp	chromosome	offset	maf	a1	a2	missfrac	p_hwe_all	logp_hwe_all	p_hwe_unaff	logp_hwe_unaff	N_Mendel
    2. 

  2. rs2283802	22	21784722	0.2593	4	2	0	0.638	0.195179	0.638	0.195179	0
    3. 

  3. rs2267000	22	21785366	0.4259	4	2	0	1	0	1	0	0
    4. 

  4. rs16997606	22	21794754	0.1111	1	3	0	1	0	1	0	0
    5. 

  5. rs4820537	22	21794810	0.4444	1	3	0	0.6985	0.155834	0.6985	0.155834	0
    6. 

  6. rs3788347	22	21797804	0.463	3	1	0	1	0	1	0	0
    7. 

  7. rs756632	22	21799918	0.09259	4	2	0	1	0	1	0	0
    8. 

  8. rs4820539	22	21807970	0.2778	1	3	0	0.6298	0.200797	0.6298	0.200797	0
    9. 

  9. rs2283804	22	21820335	0.3333	1	2	0	1	0	1	0	0
    10. 

  10. rs2267006	22	21820990	0.3333	3	1	0	1	0	1	0	0
    11. 

  11. rs4822363	22	21821000	0.07407	4	2	0	1	0	1	0	0
    12. 

  12. rs5751592	22	21827674	0.1667	4	2	0	1	0	1	0	0
    13. 

  13. rs5759608	22	21832708	0.4259	2	4	0	1	0	1	0	0
    14. 

  14. rs5759612	22	21833170	0.4259	3	1	0	1	0	1	0	0
    15. 

  15. rs2267009	22	21860168	0.2593	3	4	0	0.638	0.195179	0.638	0.195179	0
    16. 

  16. rs2267010	22	21864366	0.03704	3	1	0	1	0	1	0	0
    17. 

  17. rs5759636	22	21868698	0.07407	4	2	0.025	1	0	1	0	0
    18. 

  18. rs2071436	22	21871488	0.2593	4	2	0	0.638	0.195179	0.638	0.195179	0
    19. 

  19. rs2267013	22	21875879	0.1111	3	1	0	1	0	1	0	0
    20. 

  20. rs6003566	22	21889806	0.09259	3	1	0	1	0	1	0	0
    21. 

  21. rs2256725	22	21892891	0.1111	2	1	0	1	0	1	0	0
    22. 

  22. rs12160770	22	21892925	0.01923	1	3	0.075	1	0	1	0	0
    23. 

  23. rs5751611	22	21896019	0.4615	2	4	0.025	0.4275	0.369064	0.4275	0.369064	0
    24. 

  24. rs762601	22	21898858	0.3333	1	3	0	0.6657	0.176721	0.6657	0.176721	0
    25. 

  25. rs2156921	22	21899063	0.3333	3	1	0	0.6657	0.176721	0.6657	0.176721	0
    26. 

  26. rs4822375	22	21905642	0.3333	1	3	0	0.6657	0.176721	0.6657	0.176721	0
    27.