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/test-data/rgtestouts/rgQC/tinywga.hwe

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 76 lines | 76 code | 0 blank | 0 comment | 0 complexity | 002fd50a87d05904d1bc95ac708b71ab MD5 | raw file
 1 CHR         SNP     TEST   A1   A2                 GENO   O(HET)   E(HET)            P 
 2  22   rs2283802      ALL    4    2              1/12/14   0.4444   0.3841        0.638
 3  22   rs2283802      AFF    4    2                0/0/0      nan      nan           NA
 4  22   rs2283802    UNAFF    4    2              1/12/14   0.4444   0.3841        0.638
 5  22   rs2267000      ALL    4    2               5/13/9   0.4815    0.489            1
 6  22   rs2267000      AFF    4    2                0/0/0      nan      nan           NA
 7  22   rs2267000    UNAFF    4    2               5/13/9   0.4815    0.489            1
 8  22  rs16997606      ALL    1    3               0/6/21   0.2222   0.1975            1
 9  22  rs16997606      AFF    1    3                0/0/0      nan      nan           NA
10  22  rs16997606    UNAFF    1    3               0/6/21   0.2222   0.1975            1
11  22   rs4820537      ALL    1    3               6/12/9   0.4444   0.4938       0.6985
12  22   rs4820537      AFF    1    3                0/0/0      nan      nan           NA
13  22   rs4820537    UNAFF    1    3               6/12/9   0.4444   0.4938       0.6985
14  22   rs3788347      ALL    3    1               6/13/8   0.4815   0.4973            1
15  22   rs3788347      AFF    3    1                0/0/0      nan      nan           NA
16  22   rs3788347    UNAFF    3    1               6/13/8   0.4815   0.4973            1
17  22    rs756632      ALL    4    2               0/5/22   0.1852    0.168            1
18  22    rs756632      AFF    4    2                0/0/0      nan      nan           NA
19  22    rs756632    UNAFF    4    2               0/5/22   0.1852    0.168            1
20  22   rs4820539      ALL    1    3              1/13/13   0.4815   0.4012       0.6298
21  22   rs4820539      AFF    1    3                0/0/0      nan      nan           NA
22  22   rs4820539    UNAFF    1    3              1/13/13   0.4815   0.4012       0.6298
23  22   rs2283804      ALL    1    2              3/12/12   0.4444   0.4444            1
24  22   rs2283804      AFF    1    2                0/0/0      nan      nan           NA
25  22   rs2283804    UNAFF    1    2              3/12/12   0.4444   0.4444            1
26  22   rs2267006      ALL    3    1              3/12/12   0.4444   0.4444            1
27  22   rs2267006      AFF    3    1                0/0/0      nan      nan           NA
28  22   rs2267006    UNAFF    3    1              3/12/12   0.4444   0.4444            1
29  22   rs4822363      ALL    4    2               0/4/23   0.1481   0.1372            1
30  22   rs4822363      AFF    4    2                0/0/0      nan      nan           NA
31  22   rs4822363    UNAFF    4    2               0/4/23   0.1481   0.1372            1
32  22   rs5751592      ALL    4    2               0/9/18   0.3333   0.2778            1
33  22   rs5751592      AFF    4    2                0/0/0      nan      nan           NA
34  22   rs5751592    UNAFF    4    2               0/9/18   0.3333   0.2778            1
35  22   rs5759608      ALL    2    4               5/13/9   0.4815    0.489            1
36  22   rs5759608      AFF    2    4                0/0/0      nan      nan           NA
37  22   rs5759608    UNAFF    2    4               5/13/9   0.4815    0.489            1
38  22   rs5759612      ALL    3    1               5/13/9   0.4815    0.489            1
39  22   rs5759612      AFF    3    1                0/0/0      nan      nan           NA
40  22   rs5759612    UNAFF    3    1               5/13/9   0.4815    0.489            1
41  22   rs2267009      ALL    3    4              1/12/14   0.4444   0.3841        0.638
42  22   rs2267009      AFF    3    4                0/0/0      nan      nan           NA
43  22   rs2267009    UNAFF    3    4              1/12/14   0.4444   0.3841        0.638
44  22   rs2267010      ALL    3    1               0/2/25  0.07407  0.07133            1
45  22   rs2267010      AFF    3    1                0/0/0      nan      nan           NA
46  22   rs2267010    UNAFF    3    1               0/2/25  0.07407  0.07133            1
47  22   rs5759636      ALL    4    2               0/4/23   0.1481   0.1372            1
48  22   rs5759636      AFF    4    2                0/0/0      nan      nan           NA
49  22   rs5759636    UNAFF    4    2               0/4/23   0.1481   0.1372            1
50  22   rs2071436      ALL    4    2              1/12/14   0.4444   0.3841        0.638
51  22   rs2071436      AFF    4    2                0/0/0      nan      nan           NA
52  22   rs2071436    UNAFF    4    2              1/12/14   0.4444   0.3841        0.638
53  22   rs2267013      ALL    3    1               0/6/21   0.2222   0.1975            1
54  22   rs2267013      AFF    3    1                0/0/0      nan      nan           NA
55  22   rs2267013    UNAFF    3    1               0/6/21   0.2222   0.1975            1
56  22   rs6003566      ALL    3    1               0/5/22   0.1852    0.168            1
57  22   rs6003566      AFF    3    1                0/0/0      nan      nan           NA
58  22   rs6003566    UNAFF    3    1               0/5/22   0.1852    0.168            1
59  22   rs2256725      ALL    2    1               0/6/21   0.2222   0.1975            1
60  22   rs2256725      AFF    2    1                0/0/0      nan      nan           NA
61  22   rs2256725    UNAFF    2    1               0/6/21   0.2222   0.1975            1
62  22  rs12160770      ALL    1    3               0/1/25  0.03846  0.03772            1
63  22  rs12160770      AFF    1    3                0/0/0      nan      nan           NA
64  22  rs12160770    UNAFF    1    3               0/1/25  0.03846  0.03772            1
65  22   rs5751611      ALL    2    4               4/16/6   0.6154    0.497       0.4275
66  22   rs5751611      AFF    2    4                0/0/0      nan      nan           NA
67  22   rs5751611    UNAFF    2    4               4/16/6   0.6154    0.497       0.4275
68  22    rs762601      ALL    1    3              2/14/11   0.5185   0.4444       0.6657
69  22    rs762601      AFF    1    3                0/0/0      nan      nan           NA
70  22    rs762601    UNAFF    1    3              2/14/11   0.5185   0.4444       0.6657
71  22   rs2156921      ALL    3    1              2/14/11   0.5185   0.4444       0.6657
72  22   rs2156921      AFF    3    1                0/0/0      nan      nan           NA
73  22   rs2156921    UNAFF    3    1              2/14/11   0.5185   0.4444       0.6657
74  22   rs4822375      ALL    1    3              2/14/11   0.5185   0.4444       0.6657
75  22   rs4822375      AFF    1    3                0/0/0      nan      nan           NA
76  22   rs4822375    UNAFF    1    3              2/14/11   0.5185   0.4444       0.6657