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/external_service_types/applied_biosystems_solid.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 38 lines | 34 code | 4 blank | 0 comment | 0 complexity | e56a4de0695dd692fbc64aa7a65fd4f9 MD5 | raw file
 1<sequencer_type id="applied_biosystems_solid" name="Applied Biosystems SOLiD" version="1.0.0">
 2    <description></description>
 3    <version>3</version>
 4 
 5    <data_transfer_settings>
 6        <data_transfer protocol='scp' automatic_transfer='False' host='host' user_name='user_name' password='password' data_location='data_location' rename_dataset='rename_dataset' />
 7    </data_transfer_settings>
 8 
 9    <run_details>
10        <results>
11            <dataset name="dataset1_name" datatype="dataset1_datatype" />
12            <dataset name="dataset2_name" datatype="dataset2_datatype" />
13            <dataset name="dataset3_name" datatype="dataset3_datatype" />
14        </results>
15    </run_details>
16 
17    <form type="external_service" name="Applied Biosystems SOLiD Form" description="">
18        <fields>
19            <field name="host" type="text" label="Hostname or IP address" description="" value="" required="True" />
20            <field name="user_name" type="text" label="User name" description="User name to log into the sequencer." value="" required="True" />
21            <field name="password" type="password" label="Password" description="" value="" required="True" />
22            <field name="data_location" type="text" label="Data directory" description="" value="" required="False" />
23            <field name="rename_dataset" type="select" label="Prepend the experiment name and sample name to the dataset name?" description="Galaxy datasets are renamed by prepending the experiment name and sample name to the dataset name, ensuring dataset names remain unique in Galaxy even when multiple datasets have the same name on the sequencer." value="">
24	            <option value="Do not rename" />
25	            <option value="Preprend sample name" />
26                <option value="Prepend experiment name" />
27                <option value="Prepend experiment and sample name" />
28  	        </field>
29  	        <field name="dataset1_name" type="text" label="Sample run output 1" description="" value="Colorspace FASTA file" required="True" />
30  	        <field name="dataset1_datatype" type="text" label="Sample run datatype 1" description="" value="csfasta" required="True" />
31            <field name="dataset2_name" type="text" label="Sample run output 2" description="" value="Quality file" required="True" />
32            <field name="dataset2_datatype" type="text" label="Sample run datatype 2" description="" value="qual" required="True" />
33            <field name="dataset3_name" type="text" label="Sample run output 3" description="" value="STATS file" required="True" />
34            <field name="dataset3_datatype" type="text" label="Sample run datatype 3" description="" value="txt" required="True" />
35        </fields>
36    </form>
37
38</sequencer_type>