PageRenderTime 55ms CodeModel.GetById 8ms app.highlight 41ms RepoModel.GetById 2ms app.codeStats 0ms

/static/welcome.html.cistrome

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 124 lines | 114 code | 10 blank | 0 comment | 0 complexity | afc396ea488585a52057cfaacff09026 MD5 | raw file
  1<?xml version="1.0" encoding="utf-8" ?>
  2<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
  3<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
  4<head>
  5    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
  6    <link rel="stylesheet" href="style/base.css" type="text/css" />
  7</head>
  8<body>
  9
 10<div class="document">  
 11<div class="infomessage">
 12  <strong>Welcome to Galaxy/Cistrome!</strong> <hr />
 13  Thanks to your support and test for our Cistrome AP site, which
 14  is based on <a target="_blank"
 15  href="http://main.g2.bx.psu.edu/">Galaxy</a>, a Metaserver for
 16  integrative analysis of genomic data. Please check our project
 17  trac site <a target="_blank"
 18  href="http://mercurial.cistrome.org/trac/">here</a> for more
 19  information.
 20</div>
 21<br/>
 22
 23<div class="infomessage">
 24  <strong>Server Maintenance Policy</strong> <hr />
 25  In order to provide a stable system, we schedule periodical
 26  server maintenance on <strong>every Saturday from 6:00pm to 8:00pm
 27  EST.</strong> During maintenance, we will:
 28  <ol>
 29    <li>
 30    Update Cistrome server codes if necessary.
 31    </li>
 32    <li>
 33    Clean unused and unlinked data files older than 4 weeks.
 34    </li>  
 35    <li>
 36    Delete inactive user accounts older than 8 weeks.
 37    </li>
 38    <li>
 39    Clean <a href="http://cistrome.org/aspera/user/" target="_new">ASPERA</a> directory for file upload, and reset ASPERA
 40    password. So please contact us again if necessary.
 41    </li>
 42  </ol>
 43  Due to the limit on the server, jobs running on Cistrome server have
 44  the following restrictions:
 45  <ol>
 46    <li>
 47    Only 15 jobs can be run simultaneously. Other jobs will be put
 48    into queue.
 49    </li>
 50    <li>
 51    Any job generating over 10 Giga Bytes output will be stopped by
 52    Galaxy.
 53    </li>
 54    <li>
 55    Cistrome will check every hour for jobs running over
 56    than 24hrs (after the job actually runs on the server), then
 57    terminate them. If your job is terminated in this way, the output
 58    will appear green and empty. We will improve this feature later
 59    and provide more information in the job info.
 60    </li>
 61  </ol>
 62</div>
 63<br/>
 64
 65<h2>Cistrome Analysis Pipeline (AP) Module</h2>
 66<hr />
 67<p>
 68The Cistrome AP module is to organize the analysis tools in a pipeline
 69for users, and provide users a dry-lab workbench for them to process
 70their own private data. After processing their data, users can choose
 71and package their private data and publish them into Cistrome Data
 72Collection, or they can share their private data and analysis results
 73with their friends. So if the goal for users is to process their own
 74data, and publish them into our Cistrome Data Collection module, this
 75is the entry.  We
 76choose <a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Home">Galaxy</a> as the backbone
 77for pipeline module.
 78</p>
 79
 80<iframe width="560" height="315" src="https://www.youtube.com/embed/gQDYrtDhpVc" frameborder="0" allowfullscreen></iframe>
 81
 82<h3>Quick Links to Tutorials</h3>
 83<hr>
 84
 85<div class="previous">
 86  <table border="0" cellpadding="0" cellspacing="0" width="100%">
 87    <tr>
 88      <td width="32%" style="border-right: solid white 10px;">
 89	<a href="http://cistrome.dfci.harvard.edu/trac/wiki/APtutorial">Tutorial
 90	  on Analysis Pipeline module</a>
 91      </td>
 92    </tr>
 93  </table>
 94  
 95</div>
 96
 97<br/>
 98<br/>
 99<br/>
100<hr/>
101
102<p><a target="_blank" class="reference"
103href="http://mercurial.cistrome.org/trac/wiki/team">The Cistrome
104Development team</a> is a part of <a target="_blank" class="reference"
105href="http://liulab.dfci.harvard.edu">Xiaole Shirley Liu's Lab</a> at
106the <a target="_blank" class="reference"
107href="http://www.dfci.org">Dana-Farber Cancer Institute</a> and the
108former Eli Lilly Singapore Centre for Drug Discovery. Cistrome is
109available under the <a
110href='http://www.gnu.org/licenses/gpl-3.0-standalone.html'>GNU General
111Public License</a>.</p>
112
113<!--This project is supported in part by <a target="_blank" --
114  --class="reference" --
115  --href="http://www.nsf.gov">NSF</a>, <a target="_blank" --
116  --class="reference" href="http://www.genome.gov">NHGRI</a>, --
117  --and <a target="_blank" class="reference" --
118  --href="http://www.huck.psu.edu">the Huck Institutes of the Life --
119  --Sciences</a>. -->
120<p><small>Galaxy-dist build: <b>$Rev r5355:50e249442c5a$</b></small></p>
121<p><small>Cistrome build: <b>$Rev r5391:891048651ca8$</b></small></p>
122</div>
123</body>
124</html>