/static/welcome.html.cistrome

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  3. <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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  5.     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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  7. </head>
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  8. <body>
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  9. 

  10. <div class="document">  
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  11. <div class="infomessage">
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  12.   <strong>Welcome to Galaxy/Cistrome!</strong> <hr />
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  13.   Thanks to your support and test for our Cistrome AP site, which
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  14.   is based on <a target="_blank"
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  15.   href="http://main.g2.bx.psu.edu/">Galaxy</a>, a Metaserver for
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  16.   integrative analysis of genomic data. Please check our project
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  17.   trac site <a target="_blank"
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  18.   href="http://mercurial.cistrome.org/trac/">here</a> for more
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  19.   information.
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  20. </div>
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  21. <br/>
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  22. 

  23. <div class="infomessage">
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  24.   <strong>Server Maintenance Policy</strong> <hr />
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  25.   In order to provide a stable system, we schedule periodical
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  26.   server maintenance on <strong>every Saturday from 6:00pm to 8:00pm
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  27.   EST.</strong> During maintenance, we will:
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  28.   <ol>
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  29.     <li>
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  30.     Update Cistrome server codes if necessary.
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  31.     </li>
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  32.     <li>
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  33.     Clean unused and unlinked data files older than 4 weeks.
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  34.     </li>  
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  35.     <li>
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  36.     Delete inactive user accounts older than 8 weeks.
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  37.     </li>
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  38.     <li>
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  39.     Clean <a href="http://cistrome.org/aspera/user/" target="_new">ASPERA</a> directory for file upload, and reset ASPERA
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  40.     password. So please contact us again if necessary.
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  41.     </li>
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  42.   </ol>
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  43.   Due to the limit on the server, jobs running on Cistrome server have
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  44.   the following restrictions:
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  45.   <ol>
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  46.     <li>
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  47.     Only 15 jobs can be run simultaneously. Other jobs will be put
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  48.     into queue.
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  49.     </li>
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  50.     <li>
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  51.     Any job generating over 10 Giga Bytes output will be stopped by
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  52.     Galaxy.
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  53.     </li>
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  54.     <li>
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  55.     Cistrome will check every hour for jobs running over
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  56.     than 24hrs (after the job actually runs on the server), then
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  57.     terminate them. If your job is terminated in this way, the output
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  58.     will appear green and empty. We will improve this feature later
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  59.     and provide more information in the job info.
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  60.     </li>
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  61.   </ol>
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  62. </div>
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  63. <br/>
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  64. 

  65. <h2>Cistrome Analysis Pipeline (AP) Module</h2>
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  66. <hr />
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  67. <p>
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  68. The Cistrome AP module is to organize the analysis tools in a pipeline
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  69. for users, and provide users a dry-lab workbench for them to process
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  70. their own private data. After processing their data, users can choose
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  71. and package their private data and publish them into Cistrome Data
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  72. Collection, or they can share their private data and analysis results
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  73. with their friends. So if the goal for users is to process their own
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  74. data, and publish them into our Cistrome Data Collection module, this
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  75. is the entry.  We
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  76. choose <a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Home">Galaxy</a> as the backbone
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  77. for pipeline module.
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  78. </p>
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  79. 

  80. <iframe width="560" height="315" src="https://www.youtube.com/embed/gQDYrtDhpVc" frameborder="0" allowfullscreen></iframe>
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  81. 

  82. <h3>Quick Links to Tutorials</h3>
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  83. <hr>
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  84. 

  85. <div class="previous">
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  86.   <table border="0" cellpadding="0" cellspacing="0" width="100%">
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  87.     <tr>
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  88.       <td width="32%" style="border-right: solid white 10px;">
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  89. 	<a href="http://cistrome.dfci.harvard.edu/trac/wiki/APtutorial">Tutorial
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  90. 	  on Analysis Pipeline module</a>
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  91.       </td>
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  92.     </tr>
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  93.   </table>
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  94.   
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  95. </div>
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  96. 

  97. <br/>
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  98. <br/>
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  99. <br/>
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  100. <hr/>
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  101. 

  102. <p><a target="_blank" class="reference"
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  103. href="http://mercurial.cistrome.org/trac/wiki/team">The Cistrome
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  104. Development team</a> is a part of <a target="_blank" class="reference"
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  105. href="http://liulab.dfci.harvard.edu">Xiaole Shirley Liu's Lab</a> at
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  106. the <a target="_blank" class="reference"
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  107. href="http://www.dfci.org">Dana-Farber Cancer Institute</a> and the
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  108. former Eli Lilly Singapore Centre for Drug Discovery. Cistrome is
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  109. available under the <a
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  110. href='http://www.gnu.org/licenses/gpl-3.0-standalone.html'>GNU General
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  111. Public License</a>.</p>
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  112. 

  113. <!--This project is supported in part by <a target="_blank" --
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  114.   --class="reference" --
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  115.   --href="http://www.nsf.gov">NSF</a>, <a target="_blank" --
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  116.   --class="reference" href="http://www.genome.gov">NHGRI</a>, --
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  117.   --and <a target="_blank" class="reference" --
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  118.   --href="http://www.huck.psu.edu">the Huck Institutes of the Life --
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  119.   --Sciences</a>. -->
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  120. <p><small>Galaxy-dist build: <b>$Rev r5355:50e249442c5a$</b></small></p>
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  121. <p><small>Cistrome build: <b>$Rev r5391:891048651ca8$</b></small></p>
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  122. </div>
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  123. </body>
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  124. </html>
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