/static/welcome.html.cistrome
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1<?xml version="1.0" encoding="utf-8" ?> 2<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> 3<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"> 4<head> 5 <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> 6 <link rel="stylesheet" href="style/base.css" type="text/css" /> 7</head> 8<body> 9 10<div class="document"> 11<div class="infomessage"> 12 <strong>Welcome to Galaxy/Cistrome!</strong> <hr /> 13 Thanks to your support and test for our Cistrome AP site, which 14 is based on <a target="_blank" 15 href="http://main.g2.bx.psu.edu/">Galaxy</a>, a Metaserver for 16 integrative analysis of genomic data. Please check our project 17 trac site <a target="_blank" 18 href="http://mercurial.cistrome.org/trac/">here</a> for more 19 information. 20</div> 21<br/> 22 23<div class="infomessage"> 24 <strong>Server Maintenance Policy</strong> <hr /> 25 In order to provide a stable system, we schedule periodical 26 server maintenance on <strong>every Saturday from 6:00pm to 8:00pm 27 EST.</strong> During maintenance, we will: 28 <ol> 29 <li> 30 Update Cistrome server codes if necessary. 31 </li> 32 <li> 33 Clean unused and unlinked data files older than 4 weeks. 34 </li> 35 <li> 36 Delete inactive user accounts older than 8 weeks. 37 </li> 38 <li> 39 Clean <a href="http://cistrome.org/aspera/user/" target="_new">ASPERA</a> directory for file upload, and reset ASPERA 40 password. So please contact us again if necessary. 41 </li> 42 </ol> 43 Due to the limit on the server, jobs running on Cistrome server have 44 the following restrictions: 45 <ol> 46 <li> 47 Only 15 jobs can be run simultaneously. Other jobs will be put 48 into queue. 49 </li> 50 <li> 51 Any job generating over 10 Giga Bytes output will be stopped by 52 Galaxy. 53 </li> 54 <li> 55 Cistrome will check every hour for jobs running over 56 than 24hrs (after the job actually runs on the server), then 57 terminate them. If your job is terminated in this way, the output 58 will appear green and empty. We will improve this feature later 59 and provide more information in the job info. 60 </li> 61 </ol> 62</div> 63<br/> 64 65<h2>Cistrome Analysis Pipeline (AP) Module</h2> 66<hr /> 67<p> 68The Cistrome AP module is to organize the analysis tools in a pipeline 69for users, and provide users a dry-lab workbench for them to process 70their own private data. After processing their data, users can choose 71and package their private data and publish them into Cistrome Data 72Collection, or they can share their private data and analysis results 73with their friends. So if the goal for users is to process their own 74data, and publish them into our Cistrome Data Collection module, this 75is the entry. We 76choose <a href="https://bitbucket.org/galaxy/galaxy-central/wiki/Home">Galaxy</a> as the backbone 77for pipeline module. 78</p> 79 80<iframe width="560" height="315" src="https://www.youtube.com/embed/gQDYrtDhpVc" frameborder="0" allowfullscreen></iframe> 81 82<h3>Quick Links to Tutorials</h3> 83<hr> 84 85<div class="previous"> 86 <table border="0" cellpadding="0" cellspacing="0" width="100%"> 87 <tr> 88 <td width="32%" style="border-right: solid white 10px;"> 89 <a href="http://cistrome.dfci.harvard.edu/trac/wiki/APtutorial">Tutorial 90 on Analysis Pipeline module</a> 91 </td> 92 </tr> 93 </table> 94 95</div> 96 97<br/> 98<br/> 99<br/> 100<hr/> 101 102<p><a target="_blank" class="reference" 103href="http://mercurial.cistrome.org/trac/wiki/team">The Cistrome 104Development team</a> is a part of <a target="_blank" class="reference" 105href="http://liulab.dfci.harvard.edu">Xiaole Shirley Liu's Lab</a> at 106the <a target="_blank" class="reference" 107href="http://www.dfci.org">Dana-Farber Cancer Institute</a> and the 108former Eli Lilly Singapore Centre for Drug Discovery. Cistrome is 109available under the <a 110href='http://www.gnu.org/licenses/gpl-3.0-standalone.html'>GNU General 111Public License</a>.</p> 112 113<!--This project is supported in part by <a target="_blank" -- 114 --class="reference" -- 115 --href="http://www.nsf.gov">NSF</a>, <a target="_blank" -- 116 --class="reference" href="http://www.genome.gov">NHGRI</a>, -- 117 --and <a target="_blank" class="reference" -- 118 --href="http://www.huck.psu.edu">the Huck Institutes of the Life -- 119 --Sciences</a>. --> 120<p><small>Galaxy-dist build: <b>$Rev r5355:50e249442c5a$</b></small></p> 121<p><small>Cistrome build: <b>$Rev r5391:891048651ca8$</b></small></p> 122</div> 123</body> 124</html>